Rroxscaffold_5G00352950

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000208
Physical Location & Seq
Reverse (-)
30389511 .. 30398408
8898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352950.1

Sequence Viewer

Length: 960 bp
ATGAACCCTAGAATCCCAATCTCTAAAATTCGATCCCCACAAGTTAAATTGTTGCAAGCCACCTTGGGAGATAGTTTCTACGCCCTGCGGGCTCCAAAAGCCCTCAAGAAACTCCGCCCGAGGTGGCCGGAAACGTATGTTCGGATGAGGCCCTCGAATGCGGCGCCGCCTCTGCTTTCCGACGTTGCGAGCCGTCCACGGCTCTACCCGAGTGATGAAACCTACCGGACTTGGACGGGGAAGTATGCTATTGTGGAAGAATTGGCTGGACTAGGGGCAAGCGTACATACTTGTGCTAGAAATGAAGTCCTACTCAATGACTGCTTGAATCAATGGAAGTTGAAGGGTTTTCATCAAGTTACTGGTTCGATCTGTGATATGGTCTTAAAAACCCAACGTGAGGAGCTAATACACAAGGTCTCATTACAGTTTAATGGGAAACTTAACATCCTTATAAACAACGTGGGAACAAATATACCAAAACCAACAACCGAGTACGCAGCTGAAGATTACTCATTTATCATGAGTACCAATCTTGAATCCACATACCACTTGTGCCAACTTGCACATCCTCTTCTCAAAGATTCAGGAGCTGGTAACATAATTCTTTTGTCATCTGTTGCTGGTGTGGTATCACTTGGGAAGGTTGGGAGTATATATGCTGCCACTAAAGGAGCAATGAATCAATTGGCAAAAAACTTGGCGTGTGAATGGGCGAAAGATAAGATAAGGACTAACAGTGTTGCACCTTGGTTCATCAGAACTCCCCTCGCTGAACCTTATCTGAATGATGTAAAATTTTTGGAGGCCGTGAACTCTCGAACCCCTTTAGGACGGCCTGGAGAGCCAGAAGAGGTGTCTGCATTGGTAGCATTTTTGTGCCTCCCCGCAGCCTCTTACATAACTGGACAGACTATTTGCATCGACGGAGGGATGACTATCAATGGCTTTTCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

319

Amino Acids

35.11

Weight (kDa)

9.17

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 82 - 313 8.6e-50 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 83 - 261 7.4e-35 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 163
AciI CCGC 5 cut(s) 88, 115, 161, 167, 888
AclWI GGATC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 2 cut(s) 27, 797
AcuI CTGAAG 1 cut(s) 525
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 3 cut(s) 285, 497, 529
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 3 cut(s) 328, 343, 539
AjnI CCWGG 1 cut(s) 838
AluBI AGCT 3 cut(s) 406, 503, 593
AluI AGCT 3 cut(s) 406, 503, 593
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 1 cut(s) 27
AlwNI CAGNNNCTG 1 cut(s) 593
Ama87I CYCGRG 2 cut(s) 118, 208
AoxI GGCC 4 cut(s) 125, 149, 807, 836
ApeKI GCWGC 3 cut(s) 500, 662, 890
ApoI RAATTY 2 cut(s) 27, 797
ArsI GACNNNNNNTTYG 2 cut(s) 900, 932
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 150
AvaI CYCGRG 2 cut(s) 118, 208
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 94
BbvI GCAGC 3 cut(s) 512, 649, 902
BceAI ACGGC 4 cut(s) 177, 215, 794, 851
BciT130I CCWGG 1 cut(s) 840
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 4 cut(s) 9, 272, 297, 958
BfoI RGCGCY 1 cut(s) 167
BglI GCCNNNNNGGC 1 cut(s) 89
BisI GCNGC 5 cut(s) 162, 167, 501, 663, 891
BlsI GCNGC 5 cut(s) 163, 168, 502, 664, 892
Bme1390I CCNGG 1 cut(s) 840
BmeT110I CYCGRG 2 cut(s) 118, 208
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 2 cut(s) 93, 165
BmrFI CCNGG 1 cut(s) 840
BmsI GCATC 1 cut(s) 930
BpmI CTGGAG 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 938
BsaHI GRCGYC 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 4 cut(s) 63, 119, 197, 749
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse1I ACTGG 2 cut(s) 367, 910
Bse3DI GCAATG 1 cut(s) 684
Bse8I GATNNNNATC 1 cut(s) 938
BseBI CCWGG 1 cut(s) 840
BseDI CCNNGG 4 cut(s) 63, 119, 197, 749
BseGI GGATG 4 cut(s) 150, 447, 568, 939
BseJI GATNNNNATC 1 cut(s) 938
BseLI CCNNNNNNNGG 1 cut(s) 400
BseMI GCAATG 1 cut(s) 684
BseNI ACTGG 2 cut(s) 367, 910
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 512, 649, 902
BshFI GGCC 4 cut(s) 127, 151, 809, 838
BshNI GGYRCC 1 cut(s) 163
BsiHKCI CYCGRG 2 cut(s) 118, 208
BsiSI CCGG 2 cut(s) 128, 226
BslI CCNNNNNNNGG 1 cut(s) 400
BsmAI GTCTC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 4 cut(s) 127, 151, 809, 838
Bso31I GGTCTC 1 cut(s) 424
BsoBI CYCGRG 2 cut(s) 118, 208
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 32, 369
BspACI CCGC 5 cut(s) 88, 115, 161, 167, 888
BspANI GGCC 4 cut(s) 127, 151, 809, 838
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 2 cut(s) 93, 165
BspPI GGATC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 684
BsrI ACTGG 2 cut(s) 367, 910
BssECI CCNNGG 4 cut(s) 63, 119, 197, 749
BssMI GATC 2 cut(s) 32, 369
BssNI GRCGYC 1 cut(s) 164
BssT1I CCWWGG 2 cut(s) 63, 749
Bst2UI CCWGG 1 cut(s) 840
Bst4CI ACNGT 2 cut(s) 429, 740
Bst6I CTCTTC 2 cut(s) 579, 846
BstACI GRCGYC 1 cut(s) 164
BstC8I GCNNGC 4 cut(s) 57, 90, 190, 280
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 4 cut(s) 150, 447, 568, 939
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 2 cut(s) 35, 372
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 2 cut(s) 32, 369
BstMWI GCNNNNNNNGC 5 cut(s) 89, 98, 172, 844, 869
BstNI CCWGG 1 cut(s) 840
BstSCI CCNGG 1 cut(s) 838
BstV1I GCAGC 3 cut(s) 512, 649, 902
BsuRI GGCC 4 cut(s) 127, 151, 809, 838
BtgI CCRYGG 1 cut(s) 197
BtsCI GGATG 4 cut(s) 150, 447, 568, 939
BtsIMutI CAGTG 1 cut(s) 745
Cac8I GCNNGC 4 cut(s) 57, 90, 190, 280
CaiI CAGNNNCTG 1 cut(s) 593
CciI TCATGA 1 cut(s) 522
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 3 cut(s) 284, 496, 528
CviAII CATG 1 cut(s) 523
CviQI GTAC 3 cut(s) 284, 496, 528
DinI GGCGCC 1 cut(s) 165
DpnI GATC 2 cut(s) 34, 371
DpnII GATC 2 cut(s) 32, 369
EaeI YGGCCR 1 cut(s) 125
Eam1104I CTCTTC 2 cut(s) 579, 846
EarI CTCTTC 2 cut(s) 579, 846
EciI GGCGGA 1 cut(s) 104
Eco130I CCWWGG 2 cut(s) 63, 749
Eco24I GRGCYC 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 525
Eco88I CYCGRG 2 cut(s) 118, 208
EcoO109I RGGNCCY 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 838
EcoT14I CCWWGG 2 cut(s) 63, 749
EcoT38I GRGCYC 1 cut(s) 94
EgeI GGCGCC 1 cut(s) 165
EheI GGCGCC 1 cut(s) 165
ErhI CCWWGG 2 cut(s) 63, 749
FaeI CATG 1 cut(s) 526
FatI CATG 1 cut(s) 522
FauI CCCGC 2 cut(s) 81, 895
Fnu4HI GCNGC 5 cut(s) 162, 167, 501, 663, 891
FokI GGATG 4 cut(s) 157, 434, 555, 946
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 5 cut(s) 162, 167, 501, 663, 891
FspBI CTAG 4 cut(s) 9, 272, 297, 958
GlaI GCGC 1 cut(s) 165
GluI GCNGC 5 cut(s) 162, 167, 501, 663, 891
GsuI CTGGAG 1 cut(s) 861
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 4 cut(s) 127, 151, 809, 838
HapII CCGG 2 cut(s) 128, 226
HhaI GCGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 1 cut(s) 526
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 5 cut(s) 12, 328, 539, 584, 682
HpaII CCGG 2 cut(s) 128, 226
Hpy166II GTNNAC 2 cut(s) 197, 814
Hpy188I TCNGA 4 cut(s) 144, 181, 761, 786
Hpy188III TCNNGA 5 cut(s) 106, 523, 536, 588, 819
Hpy8I GTNNAC 2 cut(s) 197, 814
Hpy99I CGWCG 2 cut(s) 185, 929
HpyAV CCTTC 2 cut(s) 337, 637
HpyCH4III ACNGT 2 cut(s) 429, 740
HpyCH4IV ACGT 4 cut(s) 134, 183, 397, 462
HpyCH4V TGCA 5 cut(s) 55, 566, 746, 863, 921
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 98, 172, 844, 869
HpySE526I ACGT 4 cut(s) 134, 183, 397, 462
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 1 cut(s) 526
HspAI GCGC 1 cut(s) 164
KasI GGCGCC 1 cut(s) 163
Kzo9I GATC 2 cut(s) 32, 369
LmnI GCTCC 4 cut(s) 97, 403, 590, 674
Lsp1109I GCAGC 3 cut(s) 512, 649, 902
LweI GCATC 1 cut(s) 930
MaeI CTAG 4 cut(s) 9, 272, 297, 958
MaeII ACGT 4 cut(s) 134, 183, 397, 462
MaeIII GTNAC 2 cut(s) 358, 596
MalI GATC 2 cut(s) 34, 371
MboI GATC 2 cut(s) 32, 369
MboII GAAGA 4 cut(s) 269, 518, 566, 863
MfeI CAATTG 1 cut(s) 686
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 6 cut(s) 27, 47, 260, 603, 686, 797
Mly113I GGCGCC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 204
MseI TTAA 4 cut(s) 45, 386, 432, 444
MslI CAYNNNNRTG 2 cut(s) 291, 877
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 2 cut(s) 128, 226
MspR9I CCNGG 1 cut(s) 840
MunI CAATTG 1 cut(s) 686
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 1 cut(s) 840
MwoI GCNNNNNNNGC 5 cut(s) 89, 98, 172, 844, 869
NarI GGCGCC 1 cut(s) 164
NdeII GATC 2 cut(s) 32, 369
NlaIII CATG 1 cut(s) 526
NlaIV GGNNCC 2 cut(s) 93, 165
PagI TCATGA 1 cut(s) 522
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 5 cut(s) 12, 328, 539, 584, 682
PkrI GCNGC 5 cut(s) 163, 168, 502, 664, 892
PluTI GGCGCC 1 cut(s) 167
PsiI TTATAA 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 838
PspGI CCWGG 1 cut(s) 838
PspN4I GGNNCC 2 cut(s) 93, 165
PspPI GGNCC 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 593
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 3 cut(s) 285, 497, 529
RsaNI GTAC 3 cut(s) 284, 496, 528
RseI CAYNNNNRTG 2 cut(s) 291, 877
SaqAI TTAA 4 cut(s) 45, 386, 432, 444
SatI GCNGC 5 cut(s) 162, 167, 501, 663, 891
Sau3AI GATC 2 cut(s) 32, 369
Sau96I GGNCC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 840
SduI GDGCHC 1 cut(s) 94
SfaNI GCATC 1 cut(s) 930
SfoI GGCGCC 1 cut(s) 165
SmiMI CAYNNNNRTG 2 cut(s) 291, 877
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 6 cut(s) 27, 47, 260, 603, 686, 797
SsiI CCGC 5 cut(s) 88, 115, 161, 167, 888
SspDI GGCGCC 1 cut(s) 163
SspMI CTAG 4 cut(s) 9, 272, 297, 958
StyD4I CCNGG 1 cut(s) 838
StyI CCWWGG 2 cut(s) 63, 749
TaaI ACNGT 2 cut(s) 429, 740
TaiI ACGT 4 cut(s) 137, 186, 400, 465
TaqI TCGA 5 cut(s) 31, 155, 368, 820, 924
TasI AATT 6 cut(s) 27, 47, 260, 603, 686, 797
TauI GCSGC 2 cut(s) 164, 169
TfiI GAWTC 5 cut(s) 12, 328, 539, 584, 682
Tru1I TTAA 4 cut(s) 45, 386, 432, 444
Tru9I TTAA 4 cut(s) 45, 386, 432, 444
TscAI CASTG 1 cut(s) 745
TseI GCWGC 3 cut(s) 500, 662, 890
TspDTI ATGAA 7 cut(s) 17, 231, 318, 341, 695, 745, 942
TspGWI ACGGA 1 cut(s) 942
TspRI CASTG 1 cut(s) 745
XapI RAATTY 2 cut(s) 27, 797
XspI CTAG 4 cut(s) 9, 272, 297, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.