Rh4DG143600

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000208
Physical Location & Seq
Reverse (-)
28413405 .. 28590969
177565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG143600.1

Sequence Viewer

Length: 804 bp
ATGGCTCAATATGGCGGAGGAAGAAGATGGTCTCTTGAAGGAATGACTGCTCTCGTCACTGGTGGAACCAAAGGGATCGGGTATGCGATTGTTGAGGAATTGGCTGGATTAGGTGCAAGTGTACATACTTGTTCACGGAATGAAGCCCAGCTCAATGAATGCTTGAATCAATGGAAGAAGAAGGATTTTCATCAAGTCACTGGTTCAGTGTGTGATGTGGTCTCAAAAATCCAGAGAGAGGAACTAATACAGAAGGTCTCATCACTGTTTCATGGGAAACTTAATATCCTTATAAACAACGTGGGAGCTCAAATAGGAAAGCCAGCAACTGAGTACACAGCTGAAGACTACTCATTTATCATGAGTACTAATCTTGAATCTACTTACACTATGTGCCAACTAGCACATCCTCTTCTCAAAACTTCAGGAGCTGGTAACATTATTTTTCTGTCTTCTGTTGGTGGTGTGATCTCAATGGGGGAGGGTACGAGTGTATACGGTGCAACTAAAGGAGCAATGAATCAATTGGCCAAAACTTTGGCTTGTGAGTGGGCAAAAGACAAGATTAGGATTAATAGTGTTGCACCTGCGCTCATCAGAACTCCTCTTGTTGAACCTATTTTGAATGAGGAAAAGTTTATGAAGGCTATGATCTCTCGAACCCCATTAGGACGTATAGGAGAGCCTGAAGAGGTGTCTGCCTTGGTGGCATTTCTATGCCTTCCTGCAGCCTCATACATAACAGGGCAGACTATTTGCATCGATGGAGGGCTAACAGTCAATGGTTTCCAGTTCCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

267

Amino Acids

28.63

Weight (kDa)

6.89

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 16 - 210 1.8e-47 short chain dehydrogenase
KR PF08659 16 - 179 5.5e-09 KR domain
adh_short_C2 PF13561 24 - 259 3.3e-59 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AarI CACCTGC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 595
AccI GTMKAC 1 cut(s) 495
AciI CCGC 1 cut(s) 15
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 528
AcuI CTGAAG 3 cut(s) 363, 408, 708
AdeI CACNNNGTG 1 cut(s) 393
AfaI GTAC 4 cut(s) 123, 335, 367, 487
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 5 cut(s) 38, 166, 377, 614, 625
AluBI AGCT 4 cut(s) 151, 308, 341, 431
AluI AGCT 4 cut(s) 151, 308, 341, 431
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 3 cut(s) 36, 226, 262
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 2 cut(s) 329, 431
AoxI GGCC 1 cut(s) 528
ApeKI GCWGC 1 cut(s) 728
AseI ATTAAT 1 cut(s) 573
AspLEI GCGC 1 cut(s) 592
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BalI TGGCCA 1 cut(s) 530
BanII GRGCYC 1 cut(s) 310
BbsI GAAGAC 2 cut(s) 351, 444
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 1 cut(s) 740
BccI CCATC 2 cut(s) 21, 758
BcoDI GTCTC 3 cut(s) 36, 226, 262
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 726
BfuAI ACCTGC 1 cut(s) 595
BglI GCCNNNNNGGC 1 cut(s) 707
BisI GCNGC 1 cut(s) 729
BlsI GCNGC 1 cut(s) 730
BmcAI AGTACT 1 cut(s) 367
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 768
BpiI GAAGAC 2 cut(s) 351, 444
Bsa29I ATCGAT 1 cut(s) 762
BsaBI GATNNNNATC 1 cut(s) 189
BsaI GGTCTC 3 cut(s) 36, 226, 262
BsaJI CCNNGG 1 cut(s) 702
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 3 cut(s) 64, 205, 790
Bse3DI GCAATG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 762
BseDI CCNNGG 1 cut(s) 702
BseGI GGATG 1 cut(s) 406
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 3 cut(s) 64, 205, 790
BseRI GAGGAG 1 cut(s) 594
BseXI GCAGC 1 cut(s) 740
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 530
BshVI ATCGAT 1 cut(s) 762
BsiHKAI GWGCWC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 3 cut(s) 36, 226, 262
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 1 cut(s) 530
Bso31I GGTCTC 3 cut(s) 36, 226, 262
Bsp1286I GDGCHC 1 cut(s) 310
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 3 cut(s) 75, 468, 651
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 530
BspCNI CTCAG 1 cut(s) 322
BspDI ATCGAT 1 cut(s) 762
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 730
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 3 cut(s) 36, 226, 262
BsrDI GCAATG 1 cut(s) 522
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 3 cut(s) 64, 205, 790
BssECI CCNNGG 1 cut(s) 702
BssMI GATC 3 cut(s) 75, 468, 651
BssNAI GTATAC 1 cut(s) 496
BssT1I CCWWGG 1 cut(s) 702
Bst1107I GTATAC 1 cut(s) 496
Bst4CI ACNGT 3 cut(s) 267, 500, 778
Bst6I CTCTTC 2 cut(s) 417, 684
BstAUI TGTACA 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 406
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 3 cut(s) 78, 471, 654
BstMAI GTCTC 3 cut(s) 36, 226, 262
BstMBI GATC 3 cut(s) 75, 468, 651
BstMWI GCNNNNNNNGC 1 cut(s) 707
BstSFI CTRYAG 1 cut(s) 726
BstV1I GCAGC 1 cut(s) 740
BstV2I GAAGAC 2 cut(s) 351, 444
BstXI CCANNNNNNTGG 1 cut(s) 538
BstZ17I GTATAC 1 cut(s) 496
Bsu15I ATCGAT 1 cut(s) 762
BsuRI GGCC 1 cut(s) 530
BsuTUI ATCGAT 1 cut(s) 762
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 4 cut(s) 57, 198, 213, 263
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 1 cut(s) 324
CaiI CAGNNNCTG 2 cut(s) 329, 431
CciI TCATGA 1 cut(s) 360
CfoI GCGC 1 cut(s) 592
ClaI ATCGAT 1 cut(s) 762
Csp6I GTAC 4 cut(s) 122, 334, 366, 486
CviAII CATG 2 cut(s) 272, 361
CviQI GTAC 4 cut(s) 122, 334, 366, 486
DdeI CTNAG 1 cut(s) 330
DpnI GATC 3 cut(s) 77, 470, 653
DpnII GATC 3 cut(s) 75, 468, 651
DraIII CACNNNGTG 1 cut(s) 393
EaeI YGGCCR 1 cut(s) 528
Eam1104I CTCTTC 2 cut(s) 417, 684
EarI CTCTTC 2 cut(s) 417, 684
EciI GGCGGA 1 cut(s) 30
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 702
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 3 cut(s) 36, 226, 262
Eco53kI GAGCTC 1 cut(s) 308
Eco57I CTGAAG 3 cut(s) 363, 408, 708
EcoICRI GAGCTC 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 702
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 702
FaeI CATG 2 cut(s) 275, 364
FatI CATG 2 cut(s) 271, 360
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 1 cut(s) 729
FokI GGATG 1 cut(s) 393
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 729
FspBI CTAG 1 cut(s) 401
GlaI GCGC 1 cut(s) 591
GluI GCNGC 1 cut(s) 729
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 1 cut(s) 530
HhaI GCGC 1 cut(s) 592
Hin1II CATG 2 cut(s) 275, 364
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HinfI GANTC 3 cut(s) 166, 377, 520
Hpy166II GTNNAC 4 cut(s) 122, 134, 336, 496
Hpy188I TCNGA 1 cut(s) 599
Hpy188III TCNNGA 6 cut(s) 35, 232, 361, 374, 426, 657
Hpy8I GTNNAC 4 cut(s) 122, 134, 336, 496
HpyAV CCTTC 5 cut(s) 32, 175, 247, 637, 731
HpyCH4III ACNGT 3 cut(s) 267, 500, 778
HpyCH4IV ACGT 2 cut(s) 300, 673
HpyCH4V TGCA 5 cut(s) 116, 503, 584, 728, 759
HpyF10VI GCNNNNNNNGC 1 cut(s) 707
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 2 cut(s) 300, 673
Hsp92II CATG 2 cut(s) 275, 364
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 3 cut(s) 75, 468, 651
LmnI GCTCC 3 cut(s) 305, 428, 512
Lsp1109I GCAGC 1 cut(s) 740
LweI GCATC 1 cut(s) 768
MaeI CTAG 1 cut(s) 401
MaeII ACGT 2 cut(s) 300, 673
MaeIII GTNAC 3 cut(s) 55, 196, 434
MalI GATC 3 cut(s) 77, 470, 653
MboI GATC 3 cut(s) 75, 468, 651
MboII GAAGA 8 cut(s) 33, 36, 187, 190, 356, 404, 444, 701
MfeI CAATTG 1 cut(s) 524
MhlI GDGCHC 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 2 cut(s) 98, 524
MluNI TGGCCA 1 cut(s) 530
Mox20I TGGCCA 1 cut(s) 530
MscI TGGCCA 1 cut(s) 530
MseI TTAA 2 cut(s) 282, 573
MslI CAYNNNNRTG 1 cut(s) 715
Msp20I TGGCCA 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 341
MunI CAATTG 1 cut(s) 524
Mva1269I GAATGC 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 707
NdeII GATC 3 cut(s) 75, 468, 651
NlaIII CATG 2 cut(s) 275, 364
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 55, 196
PagI TCATGA 1 cut(s) 360
PaqCI CACCTGC 1 cut(s) 595
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 3 cut(s) 166, 377, 520
PkrI GCNGC 1 cut(s) 730
PshBI ATTAAT 1 cut(s) 573
PsiI TTATAA 1 cut(s) 293
Psp124BI GAGCTC 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 730
PstNI CAGNNNCTG 2 cut(s) 329, 431
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 4 cut(s) 123, 335, 367, 487
RsaNI GTAC 4 cut(s) 122, 334, 366, 486
RseI CAYNNNNRTG 1 cut(s) 715
SacI GAGCTC 1 cut(s) 310
SaqAI TTAA 2 cut(s) 282, 573
SatI GCNGC 1 cut(s) 729
Sau3AI GATC 3 cut(s) 75, 468, 651
ScaI AGTACT 1 cut(s) 367
SduI GDGCHC 1 cut(s) 310
SfaNI GCATC 1 cut(s) 768
SfcI CTRYAG 1 cut(s) 726
SmiMI CAYNNNNRTG 1 cut(s) 715
Sse9I AATT 2 cut(s) 98, 524
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 401
SstI GAGCTC 1 cut(s) 310
StyI CCWWGG 1 cut(s) 702
TaaI ACNGT 3 cut(s) 267, 500, 778
TaiI ACGT 2 cut(s) 303, 676
TaqI TCGA 2 cut(s) 658, 762
TasI AATT 2 cut(s) 98, 524
TatI WGTACW 3 cut(s) 121, 333, 365
TfiI GAWTC 3 cut(s) 166, 377, 520
Tru1I TTAA 2 cut(s) 282, 573
Tru9I TTAA 2 cut(s) 282, 573
TscAI CASTG 4 cut(s) 64, 205, 213, 270
TseFI GTSAC 2 cut(s) 55, 196
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 2 cut(s) 55, 196
TspDTI ATGAA 6 cut(s) 156, 171, 179, 260, 533, 656
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 4 cut(s) 64, 205, 213, 270
VspI ATTAAT 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 1 cut(s) 401
ZrmI AGTACT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.