pycom11g07970

Tropinone reductase homolog At1g07440-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
6106143 .. 6107154
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07970.3

Sequence Viewer

Length: 513 bp
ATGAATAGTAGAGAAGGGAGATGGTCTCTTCGTGGAATGACAGCTCTTGTCACTGGTGGAACCAAAGGAATTGGATTTAGGTATGCGATAGTGGAGGAATTGGCAGGGCTGGGTGCAATTGTGCATACTTGTTCCCGAAATGAAGTTGACCTTAATGACTGCCTGAGTCAGTGGGAGAAGAAGGGTTTCCAAGTCACTGGCTCAGTCTGTGATGTGGTGTCTAAAACCCAAAGAGAGGAGCTTATAAACAAGGTTTCATCACTCTTTGATGGCAAACTTAACATTTTTATAAACAATGTGGGGACTGTCGTACCGAAGGCAACGCTAGAGTACACAGCTGAAGATTACTCATTCATAATGAGTACCAATCTTGAATCTGCTTACAACTTGTGCCAACTTACACACCCTCTTCTCAAAGCTTCAGGAGTCGCTAACATCGTTTTTTTGTCCTCTGTTGCTGGTGTGGTCTCAGCAGGTGTCGGATCTATATATTCTGCCACTAAAGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

171

Amino Acids

18.18

Weight (kDa)

6.72

Isoelectric Point (pI)

26.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 245, 290
AarI CACCTGC 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 464
AclWI GGATC 1 cut(s) 490
AcuI CTGAAG 2 cut(s) 360, 405
AfaI GTAC 3 cut(s) 312, 332, 364
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 1 cut(s) 374
AluBI AGCT 4 cut(s) 44, 241, 338, 419
AluI AGCT 4 cut(s) 44, 241, 338, 419
Alw26I GTCTC 2 cut(s) 30, 472
AlwI GGATC 1 cut(s) 490
Asp700I GAANNNNTTC 1 cut(s) 185
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BccI CCATC 2 cut(s) 15, 263
BcoDI GTCTC 2 cut(s) 30, 472
BfaI CTAG 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BsaI GGTCTC 2 cut(s) 30, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 2 cut(s) 58, 202
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 3 cut(s) 155, 216, 483
BseNI ACTGG 2 cut(s) 58, 202
BseRI GAGGAG 1 cut(s) 251
BseYI CCCAGC 1 cut(s) 109
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 2 cut(s) 30, 472
BsmFI GGGAC 1 cut(s) 316
Bso31I GGTCTC 2 cut(s) 30, 472
Bsp143I GATC 1 cut(s) 482
BspCNI CTCAG 3 cut(s) 156, 215, 482
BspLI GGNNCC 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 1 cut(s) 490
BspTNI GGTCTC 2 cut(s) 30, 472
BsrI ACTGG 2 cut(s) 58, 202
BssMI GATC 1 cut(s) 482
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 2 cut(s) 33, 414
BstDEI CTNAG 4 cut(s) 164, 202, 469, 510
BstKTI GATC 1 cut(s) 485
BstMAI GTCTC 2 cut(s) 30, 472
BstMBI GATC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 482
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 1 cut(s) 482
BtsIMutI CAGTG 3 cut(s) 51, 176, 195
BveI ACCTGC 1 cut(s) 464
Csp6I GTAC 3 cut(s) 311, 331, 363
CviJI RGCY 6 cut(s) 44, 109, 201, 241, 338, 419
CviKI_1 RGCY 6 cut(s) 44, 109, 201, 241, 338, 419
CviQI GTAC 3 cut(s) 311, 331, 363
DdeI CTNAG 4 cut(s) 164, 202, 469, 510
DpnI GATC 1 cut(s) 484
DpnII GATC 1 cut(s) 482
Eam1104I CTCTTC 2 cut(s) 33, 414
EarI CTCTTC 2 cut(s) 33, 414
Eco31I GGTCTC 2 cut(s) 30, 472
Eco57I CTGAAG 2 cut(s) 360, 405
FaiI YATR 7 cut(s) 84, 126, 245, 290, 356, 488, 490
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 316
FspBI CTAG 1 cut(s) 326
GsaI CCCAGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 3 cut(s) 166, 374, 426
Hpy166II GTNNAC 2 cut(s) 148, 333
Hpy188I TCNGA 1 cut(s) 482
Hpy188III TCNNGA 3 cut(s) 135, 371, 423
Hpy8I GTNNAC 2 cut(s) 148, 333
HpyAV CCTTC 3 cut(s) 8, 175, 310
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 2 cut(s) 116, 124
HpyF3I CTNAG 4 cut(s) 164, 202, 469, 510
Kzo9I GATC 1 cut(s) 482
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 8 cut(s) 39, 90, 95, 176, 183, 408, 444, 459
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 49, 193
MalI GATC 1 cut(s) 484
MboI GATC 1 cut(s) 482
MboII GAAGA 4 cut(s) 20, 190, 353, 401
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 1 cut(s) 482
MluCI AATT 3 cut(s) 69, 98, 117
MlyI GAGTC 2 cut(s) 175, 435
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 4 cut(s) 88, 229, 417, 460
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 2 cut(s) 153, 279
MspA1I CMGCKG 1 cut(s) 338
MunI CAATTG 1 cut(s) 117
NdeII GATC 1 cut(s) 482
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 49, 193
PaqCI CACCTGC 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 374
PleI GAGTC 2 cut(s) 174, 434
PpsI GAGTC 2 cut(s) 174, 434
PsiI TTATAA 2 cut(s) 245, 290
PspFI CCCAGC 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 482
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 3 cut(s) 312, 332, 364
RsaNI GTAC 3 cut(s) 311, 331, 363
SaqAI TTAA 2 cut(s) 153, 279
Sau3AI GATC 1 cut(s) 482
SchI GAGTC 2 cut(s) 175, 435
SetI ASST 9 cut(s) 46, 83, 153, 243, 255, 340, 421, 478, 508
Sse9I AATT 3 cut(s) 69, 98, 117
SspMI CTAG 1 cut(s) 326
TaaI ACNGT 1 cut(s) 307
TasI AATT 3 cut(s) 69, 98, 117
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 153, 279
Tru9I TTAA 2 cut(s) 153, 279
TscAI CASTG 3 cut(s) 58, 176, 202
TseFI GTSAC 2 cut(s) 49, 193
Tsp45I GTSAC 2 cut(s) 49, 193
TspDTI ATGAA 4 cut(s) 17, 156, 246, 343
TspRI CASTG 3 cut(s) 58, 176, 202
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.