RchiOBHm_Chr3g0473751

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000208
Physical Location & Seq
Forward (+)
19492587 .. 19493145
559 bp
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UTR
Exon/CDS
Intron
PRQ43941

Sequence Viewer

Length: 438 bp
ATGCATCCTCTTCTGAAAGCTTCAGGAGCTGGTAACATCATTCCTGTGTCTTCTGCTGCTGGTGTGGTATCACTTGGTAAGGTTGGGAGTATATACGGTGCAACTAAAGGTCCGCTTTTGATTTCCACAAATTTTATACACCATAAATTGAAGGTGAAACGTGATGGCCGATCTCTTCTCTACTATATTTCAGGAGCAATGAATCAATTGGCCCAAAACTTGGCTTGTGATGGGCGAAAGACAAGATTAGGATCAACAGTTTTGAGTAACGAAAAGTTTTTGGAGGCTGTCATCTCTCGAACCCCATTAGGACGTACTAGAGAGCCTGAAGAGGTGTCTGCATTGGTGGCATTTCTATGCCTTCCGGCAGCCTCTTACATAAGAGGGCAGACTATTTGCGTTGATGGAGGGATGACTGTCAATGGCTTCCACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

145

Amino Acids

15.39

Weight (kDa)

9.76

Isoelectric Point (pI)

28.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 80 - 139 3.8e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 220
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 2 cut(s) 6, 348
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 2 cut(s) 20, 29
AluI AGCT 2 cut(s) 20, 29
AlwI GGATC 1 cut(s) 259
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 2 cut(s) 166, 210
ApeKI GCWGC 2 cut(s) 56, 368
ApoI RAATTY 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 110, 211
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 43, 380
BccI CCATC 3 cut(s) 158, 224, 398
BfaI CTAG 2 cut(s) 318, 436
BisI GCNGC 2 cut(s) 57, 369
BlsI GCNGC 2 cut(s) 58, 370
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 110, 211
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 250
BseGI GGATG 2 cut(s) 4, 417
BseJI GATNNNNATC 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 43, 380
BshFI GGCC 2 cut(s) 168, 212
BsiSI CCGG 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 220
BsnI GGCC 2 cut(s) 168, 212
Bsp143I GATC 2 cut(s) 170, 251
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 168, 212
BspPI GGATC 1 cut(s) 259
BsrDI GCAATG 1 cut(s) 204
BssMI GATC 2 cut(s) 170, 251
Bst4CI ACNGT 3 cut(s) 98, 259, 418
Bst6I CTCTTC 3 cut(s) 15, 180, 324
BstF5I GGATG 2 cut(s) 4, 417
BstKTI GATC 2 cut(s) 173, 254
BstMBI GATC 2 cut(s) 170, 251
BstMWI GCNNNNNNNGC 2 cut(s) 26, 347
BstV1I GCAGC 2 cut(s) 43, 380
BstV2I GAAGAC 1 cut(s) 42
BsuRI GGCC 2 cut(s) 168, 212
BtsCI GGATG 2 cut(s) 4, 417
CaiI CAGNNNCTG 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 110, 211
Csp6I GTAC 1 cut(s) 315
CviJI RGCY 9 cut(s) 20, 29, 168, 212, 224, 287, 325, 371, 426
CviKI_1 RGCY 9 cut(s) 20, 29, 168, 212, 224, 287, 325, 371, 426
CviQI GTAC 1 cut(s) 315
DpnI GATC 2 cut(s) 172, 253
DpnII GATC 2 cut(s) 170, 251
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 3 cut(s) 15, 180, 324
EarI CTCTTC 3 cut(s) 15, 180, 324
Eco47I GGWCC 1 cut(s) 110
Eco57I CTGAAG 2 cut(s) 6, 348
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 7 cut(s) 92, 94, 137, 144, 186, 358, 380
FalI AAGNNNNNCTT 2 cut(s) 99, 131
Fnu4HI GCNGC 2 cut(s) 57, 369
FokI GGATG 1 cut(s) 424
Fsp4HI GCNGC 2 cut(s) 57, 369
FspBI CTAG 2 cut(s) 318, 436
GluI GCNGC 2 cut(s) 57, 369
HaeIII GGCC 2 cut(s) 168, 212
HapII CCGG 1 cut(s) 365
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 1 cut(s) 202
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 3 cut(s) 24, 192, 297
HpyAV CCTTC 2 cut(s) 145, 371
HpyCH4III ACNGT 3 cut(s) 98, 259, 418
HpyCH4IV ACGT 2 cut(s) 160, 313
HpyCH4V TGCA 3 cut(s) 4, 101, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 347
HpySE526I ACGT 2 cut(s) 160, 313
Kzo9I GATC 2 cut(s) 170, 251
LmnI GCTCC 2 cut(s) 26, 194
LpnPI CCDG 7 cut(s) 9, 15, 45, 57, 177, 339, 378
Lsp1109I GCAGC 2 cut(s) 43, 380
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 318, 436
MaeII ACGT 2 cut(s) 160, 313
MaeIII GTNAC 2 cut(s) 32, 266
MalI GATC 2 cut(s) 172, 253
MboI GATC 2 cut(s) 170, 251
MboII GAAGA 3 cut(s) 42, 167, 341
MfeI CAATTG 1 cut(s) 206
MluCI AATT 3 cut(s) 130, 146, 206
MnlI CCTC 6 cut(s) 18, 277, 325, 377, 382, 401
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 2 cut(s) 44, 355
MspI CCGG 1 cut(s) 365
MunI CAATTG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 26, 347
NdeII GATC 2 cut(s) 170, 251
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 2 cut(s) 58, 370
PspPI GGNCC 2 cut(s) 110, 211
PstNI CAGNNNCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 2 cut(s) 44, 355
SatI GCNGC 2 cut(s) 57, 369
Sau3AI GATC 2 cut(s) 170, 251
Sau96I GGNCC 2 cut(s) 110, 211
SetI ASST 8 cut(s) 22, 31, 84, 112, 156, 163, 316, 336
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 44, 355
Sse9I AATT 3 cut(s) 130, 146, 206
SsiI CCGC 1 cut(s) 113
SspMI CTAG 2 cut(s) 318, 436
TaaI ACNGT 3 cut(s) 98, 259, 418
TaiI ACGT 2 cut(s) 163, 316
TaqI TCGA 1 cut(s) 298
TasI AATT 3 cut(s) 130, 146, 206
TfiI GAWTC 1 cut(s) 202
TseI GCWGC 2 cut(s) 56, 368
TspDTI ATGAA 1 cut(s) 215
Van91I CCANNNNNTGG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 130
XspI CTAG 2 cut(s) 318, 436
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.