Rroxscaffold_5G00352980

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000208
Physical Location & Seq
Reverse (-)
30415288 .. 30421142
5855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352980.1

Sequence Viewer

Length: 519 bp
ATGTTAGGATATACAACCTCTCGCCGTACTGGAGAGAATCATACACTTAAGGAAAGCTATGGTCTAAGTGCCGTACCTGGACTTAGATACAGGAATTGTCATAAAAAGGAACAAAAGAATCTGTATGCGATTGTTGAGGAATTGGCTGGATTAGGTGCAAGTGTACATACTTGTTCACGGAATGAAGCCCAGCTCAATGAATGCTTGAATCAATGGAAGAAGAAAGGTTTTCATCAAGTCACTGGTTCAGTGTGTGATGTGGTCTCAAAAATCCAAAGAGAGGAACTAATACAGAAGGTCTCATCACTGTTTCATGGGAAACTTAATATTCTTATTTTGAATAACGAAAAGTTTATGGAAGCTATCATCTCTCGAACCCCATTAGGACGTATAGGAGAGCCTGAAGAGGTGTCTGCCTTGGTGGCATTTTTATGCCTTCCTGCAGCTTCATACATAACAGGGCAGACTATTTGCATAGATGGAGGGATAACTGTCAATGGCTTCCAGTTCCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

172

Amino Acids

19.03

Weight (kDa)

8.53

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 43 - 114 7.8e-07 short chain dehydrogenase
adh_short_C2 PF13561 114 - 164 5.3e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 3 cut(s) 28, 75, 165
AfiI CCNNNNNNNGG 1 cut(s) 280
AflII CTTAAG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 208, 340
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 4 cut(s) 57, 193, 362, 446
AluI AGCT 4 cut(s) 57, 193, 362, 446
Alw26I GTCTC 2 cut(s) 268, 304
ApeKI GCWGC 1 cut(s) 443
BbvI GCAGC 1 cut(s) 455
BccI CCATC 1 cut(s) 473
BceAI ACGGC 2 cut(s) 9, 56
BciT130I CCWGG 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 268, 304
BfmI CTRYAG 1 cut(s) 441
BfrI CTTAAG 1 cut(s) 47
BglI GCCNNNNNGGC 1 cut(s) 422
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 51
BsaI GGTCTC 2 cut(s) 268, 304
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 3 cut(s) 34, 247, 505
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 280
BseNI ACTGG 3 cut(s) 34, 247, 505
BseXI GCAGC 1 cut(s) 455
BseYI CCCAGC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 2 cut(s) 268, 304
BsmI GAATGC 1 cut(s) 206
Bso31I GGTCTC 2 cut(s) 268, 304
Bsp1407I TGTACA 1 cut(s) 163
BspMAI CTGCAG 1 cut(s) 445
BspTI CTTAAG 1 cut(s) 47
BspTNI GGTCTC 2 cut(s) 268, 304
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 3 cut(s) 34, 247, 505
BssECI CCNNGG 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 309, 493
Bst6I CTCTTC 1 cut(s) 399
BstAFI CTTAAG 1 cut(s) 47
BstAUI TGTACA 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 65, 83
BstMAI GTCTC 2 cut(s) 268, 304
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 455
BtsIMutI CAGTG 3 cut(s) 240, 255, 305
Csp6I GTAC 3 cut(s) 27, 74, 164
CviAII CATG 1 cut(s) 314
CviJI RGCY 8 cut(s) 57, 146, 188, 193, 362, 400, 446, 501
CviKI_1 RGCY 8 cut(s) 57, 146, 188, 193, 362, 400, 446, 501
CviQI GTAC 3 cut(s) 27, 74, 164
DdeI CTNAG 2 cut(s) 65, 83
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 417
Eco31I GGTCTC 2 cut(s) 268, 304
Eco57I CTGAAG 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 1 cut(s) 317
FatI CATG 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 444
Fsp4HI GCNGC 1 cut(s) 444
GluI GCNGC 1 cut(s) 444
GsaI CCCAGC 1 cut(s) 193
GsuI CTGGAG 1 cut(s) 51
Hin1II CATG 1 cut(s) 317
HinfI GANTC 3 cut(s) 37, 118, 208
Hpy166II GTNNAC 2 cut(s) 164, 176
Hpy188III TCNNGA 1 cut(s) 372
Hpy8I GTNNAC 2 cut(s) 164, 176
HpyAV CCTTC 2 cut(s) 289, 446
HpyCH4III ACNGT 2 cut(s) 309, 493
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 3 cut(s) 158, 443, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 2 cut(s) 65, 83
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 1 cut(s) 317
Lsp1109I GCAGC 1 cut(s) 455
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 1 cut(s) 238
MboII GAAGA 3 cut(s) 229, 232, 416
MluCI AATT 2 cut(s) 94, 140
MnlI CCTC 5 cut(s) 28, 130, 274, 400, 476
MseI TTAA 2 cut(s) 48, 324
MslI CAYNNNNRTG 1 cut(s) 430
MspCI CTTAAG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 422
NlaIII CATG 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 238
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 37, 118, 208
PkrI GCNGC 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 1 cut(s) 76
PstI CTGCAG 1 cut(s) 445
RsaI GTAC 3 cut(s) 28, 75, 165
RsaNI GTAC 3 cut(s) 27, 74, 164
RseI CAYNNNNRTG 1 cut(s) 430
SaqAI TTAA 2 cut(s) 48, 324
SatI GCNGC 1 cut(s) 444
ScrFI CCNGG 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 430
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 94, 140
SspI AATATT 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 309, 493
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 373
TasI AATT 2 cut(s) 94, 140
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 3 cut(s) 37, 118, 208
Tru1I TTAA 2 cut(s) 48, 324
Tru9I TTAA 2 cut(s) 48, 324
TscAI CASTG 3 cut(s) 247, 255, 312
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 5 cut(s) 198, 213, 221, 302, 438
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 3 cut(s) 247, 255, 312
Vha464I CTTAAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.