RchiOBHm_Chr4g0408611

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000208
Physical Location & Seq
Forward (+)
31404198 .. 31406156
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37969

Sequence Viewer

Length: 882 bp
ATGGCTCAATATGGCGGAGAAAGAAGATGGTCTCTTGAAGGAATGACTGCTCTCGTCACTGGTGGAACCAAAGGGATCGGAAACGCCAACACATGCATCACCATTTTGACAGCCACAAATTTAGTGAATTTGCTAGACCGTGTATCAATTGTTTCTAGGTATGCGATTGTTGAGGAATTGGCTGGATTAGGTGCAAGTGTACACACTTGTTCAAGGAATGAAGCCCAGCTCAATGAATGCTTGAATCAATGGAAGAAGAAGGGTTTTCATCAAGTCACTGGTTCAGTGTGTGATGTGGTCTCAAAAATCCAAAGAGAGGAGCTAATACAGAAGGTCTCATCACTGTTTCATGGGAAACTTAATATTCTTATAAACAACGTGGGAACTAATATAGGAAAGCCAACAACTGAGTACACAGCTGAAGACTACTCATTTATCATGAGTACCAATCTTGAATCTACTTACACTATGTGCCAACTAGCACATCCTCTTCTCAAAACTTCAGGAGCTGGTAACATTGTTTTTCTGTCTTCTGTTGGTGGTGTGGTCTCAATGGGGGAGGTTACGAGTGTATACGGTGCAACTAAAGGAGCAATGAATCAATTGGCCAAAACTTTGGCTTGTGAGTGGGCAAAAGACAAGATTAGGATTAATAGTGTTGCACCTGCGGTCATCAGAACTCCTCTTGTTGAACCTATTTTGAATAACGAAAAGTTTATGGAAGCTATCATCTCCCGAACCCCATTAGGACGTATTGGAGAGCCTGAAGAGGTGTCTGCCCTGGTGGCATTTTTATGCCTTCCTGCAGCCTCATACATAACAGGGCAGACTATTTGCATCGATGGAGGGCTAACTGTCAATGGCTTCCAGTTCCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

293

Amino Acids

31.45

Weight (kDa)

6.89

Isoelectric Point (pI)

25.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 54 - 285 1.4e-56 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 55 - 236 6.5e-40 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
AarI CACCTGC 1 cut(s) 673
Acc36I ACCTGC 1 cut(s) 673
AccI GTMKAC 1 cut(s) 573
AciI CCGC 2 cut(s) 15, 668
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 2 cut(s) 118, 127
AcuI CTGAAG 3 cut(s) 441, 486, 786
AdeI CACNNNGTG 1 cut(s) 471
AfaI GTAC 3 cut(s) 201, 413, 445
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 6 cut(s) 38, 213, 244, 455, 692, 703
AjnI CCWGG 1 cut(s) 780
AluBI AGCT 5 cut(s) 229, 322, 419, 509, 725
AluI AGCT 5 cut(s) 229, 322, 419, 509, 725
Alw26I GTCTC 4 cut(s) 36, 304, 340, 553
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 1 cut(s) 606
ApeKI GCWGC 1 cut(s) 806
ApoI RAATTY 2 cut(s) 118, 127
AseI ATTAAT 1 cut(s) 651
AsuHPI GGTGA 1 cut(s) 91
BalI TGGCCA 1 cut(s) 608
BbsI GAAGAC 2 cut(s) 429, 522
BbvI GCAGC 1 cut(s) 818
BccI CCATC 2 cut(s) 21, 836
BciT130I CCWGG 1 cut(s) 782
BcoDI GTCTC 4 cut(s) 36, 304, 340, 553
BfaI CTAG 3 cut(s) 134, 156, 479
BfmI CTRYAG 1 cut(s) 804
BfuAI ACCTGC 1 cut(s) 673
BglI GCCNNNNNGGC 1 cut(s) 785
BisI GCNGC 1 cut(s) 807
BlsI GCNGC 1 cut(s) 808
Bme1390I CCNGG 1 cut(s) 782
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 782
BmsI GCATC 2 cut(s) 105, 846
BpiI GAAGAC 2 cut(s) 429, 522
Bsa29I ATCGAT 1 cut(s) 840
BsaI GGTCTC 4 cut(s) 36, 304, 340, 553
BsaJI CCNNGG 1 cut(s) 780
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 3 cut(s) 64, 283, 868
Bse3DI GCAATG 1 cut(s) 600
BseBI CCWGG 1 cut(s) 782
BseCI ATCGAT 1 cut(s) 840
BseDI CCNNGG 1 cut(s) 780
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 600
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 3 cut(s) 64, 283, 868
BseRI GAGGAG 2 cut(s) 332, 672
BseXI GCAGC 1 cut(s) 818
BseYI CCCAGC 1 cut(s) 225
BshFI GGCC 1 cut(s) 608
BshVI ATCGAT 1 cut(s) 840
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 4 cut(s) 36, 304, 340, 553
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 1 cut(s) 608
Bso31I GGTCTC 4 cut(s) 36, 304, 340, 553
Bsp1407I TGTACA 1 cut(s) 199
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 2 cut(s) 15, 668
BspANI GGCC 1 cut(s) 608
BspCNI CTCAG 1 cut(s) 400
BspDI ATCGAT 1 cut(s) 840
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 808
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 4 cut(s) 36, 304, 340, 553
BsrDI GCAATG 1 cut(s) 600
BsrGI TGTACA 1 cut(s) 199
BsrI ACTGG 3 cut(s) 64, 283, 868
BssECI CCNNGG 1 cut(s) 780
BssMI GATC 1 cut(s) 75
BssNAI GTATAC 1 cut(s) 574
Bst1107I GTATAC 1 cut(s) 574
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 4 cut(s) 140, 345, 578, 856
Bst6I CTCTTC 2 cut(s) 495, 762
BstAUI TGTACA 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 408
BstF5I GGATG 1 cut(s) 484
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 4 cut(s) 36, 304, 340, 553
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 785
BstNI CCWGG 1 cut(s) 782
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 780
BstSFI CTRYAG 1 cut(s) 804
BstV1I GCAGC 1 cut(s) 818
BstV2I GAAGAC 2 cut(s) 429, 522
BstXI CCANNNNNNTGG 1 cut(s) 616
BstZ17I GTATAC 1 cut(s) 574
Bsu15I ATCGAT 1 cut(s) 840
BsuRI GGCC 1 cut(s) 608
BsuTUI ATCGAT 1 cut(s) 840
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 4 cut(s) 57, 276, 291, 341
BveI ACCTGC 1 cut(s) 673
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 438
ClaI ATCGAT 1 cut(s) 840
Csp6I GTAC 3 cut(s) 200, 412, 444
CviAII CATG 3 cut(s) 93, 350, 439
CviQI GTAC 3 cut(s) 200, 412, 444
DdeI CTNAG 1 cut(s) 408
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
DraIII CACNNNGTG 1 cut(s) 471
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 2 cut(s) 495, 762
EarI CTCTTC 2 cut(s) 495, 762
EciI GGCGGA 1 cut(s) 30
Eco31I GGTCTC 4 cut(s) 36, 304, 340, 553
Eco57I CTGAAG 3 cut(s) 441, 486, 786
EcoRII CCWGG 1 cut(s) 780
EcoT22I ATGCAT 1 cut(s) 98
FaeI CATG 3 cut(s) 96, 353, 442
FatI CATG 3 cut(s) 92, 349, 438
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 1 cut(s) 807
FokI GGATG 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 807
FspBI CTAG 3 cut(s) 134, 156, 479
GluI GCNGC 1 cut(s) 807
GsaI CCCAGC 1 cut(s) 229
HaeIII GGCC 1 cut(s) 608
Hin1II CATG 3 cut(s) 96, 353, 442
HinfI GANTC 3 cut(s) 244, 455, 598
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 4 cut(s) 200, 202, 414, 574
Hpy188I TCNGA 2 cut(s) 80, 677
Hpy188III TCNNGA 5 cut(s) 35, 439, 452, 504, 735
Hpy8I GTNNAC 4 cut(s) 200, 202, 414, 574
HpyAV CCTTC 4 cut(s) 32, 253, 325, 809
HpyCH4III ACNGT 4 cut(s) 140, 345, 578, 856
HpyCH4IV ACGT 2 cut(s) 378, 751
HpyCH4V TGCA 6 cut(s) 96, 194, 581, 662, 806, 837
HpyF10VI GCNNNNNNNGC 1 cut(s) 785
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 2 cut(s) 378, 751
Hsp92II CATG 3 cut(s) 96, 353, 442
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 3 cut(s) 319, 506, 590
Lsp1109I GCAGC 1 cut(s) 818
LweI GCATC 2 cut(s) 105, 846
MaeI CTAG 3 cut(s) 134, 156, 479
MaeII ACGT 2 cut(s) 378, 751
MaeIII GTNAC 4 cut(s) 55, 274, 512, 562
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 7 cut(s) 36, 265, 268, 434, 482, 522, 779
MfeI CAATTG 2 cut(s) 147, 602
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 5 cut(s) 118, 127, 147, 176, 602
MluNI TGGCCA 1 cut(s) 608
MnlI CCTC 8 cut(s) 166, 310, 498, 553, 693, 763, 820, 839
Mox20I TGGCCA 1 cut(s) 608
Mph1103I ATGCAT 1 cut(s) 98
MscI TGGCCA 1 cut(s) 608
MseI TTAA 2 cut(s) 360, 651
MslI CAYNNNNRTG 1 cut(s) 793
Msp20I TGGCCA 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 782
MunI CAATTG 2 cut(s) 147, 602
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 1 cut(s) 782
MwoI GCNNNNNNNGC 1 cut(s) 785
NdeII GATC 1 cut(s) 75
NlaIII CATG 3 cut(s) 96, 353, 442
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 55, 274
NsiI ATGCAT 1 cut(s) 98
NspI RCATGY 1 cut(s) 96
PagI TCATGA 1 cut(s) 438
PaqCI CACCTGC 1 cut(s) 673
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 244, 455, 598
PkrI GCNGC 1 cut(s) 808
PshBI ATTAAT 1 cut(s) 651
PsiI TTATAA 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 780
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 808
PstNI CAGNNNCTG 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 3 cut(s) 201, 413, 445
RsaNI GTAC 3 cut(s) 200, 412, 444
RseI CAYNNNNRTG 1 cut(s) 793
SaqAI TTAA 2 cut(s) 360, 651
SatI GCNGC 1 cut(s) 807
Sau3AI GATC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 782
SfaNI GCATC 2 cut(s) 105, 846
SfcI CTRYAG 1 cut(s) 804
SmiMI CAYNNNNRTG 1 cut(s) 793
Sse9I AATT 5 cut(s) 118, 127, 147, 176, 602
SsiI CCGC 2 cut(s) 15, 668
SspI AATATT 1 cut(s) 364
SspMI CTAG 3 cut(s) 134, 156, 479
StyD4I CCNGG 1 cut(s) 780
TaaI ACNGT 4 cut(s) 140, 345, 578, 856
TaiI ACGT 2 cut(s) 381, 754
TaqI TCGA 1 cut(s) 840
TasI AATT 5 cut(s) 118, 127, 147, 176, 602
TatI WGTACW 2 cut(s) 199, 411
TfiI GAWTC 3 cut(s) 244, 455, 598
Tru1I TTAA 2 cut(s) 360, 651
Tru9I TTAA 2 cut(s) 360, 651
TscAI CASTG 4 cut(s) 64, 283, 291, 348
TseFI GTSAC 2 cut(s) 55, 274
TseI GCWGC 1 cut(s) 806
Tsp45I GTSAC 2 cut(s) 55, 274
TspDTI ATGAA 5 cut(s) 234, 249, 257, 338, 611
TspRI CASTG 4 cut(s) 64, 283, 291, 348
VspI ATTAAT 1 cut(s) 651
XapI RAATTY 2 cut(s) 118, 127
XceI RCATGY 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 573
XspI CTAG 3 cut(s) 134, 156, 479
Zsp2I ATGCAT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.