Rmu_sc0005878.1_g000021

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005878.1
OG0000208
Physical Location & Seq
Forward (+)
79975 .. 81496
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005878.1_g000021.1.cds

Sequence Viewer

Length: 888 bp
atgtatcttcaaattttggccatcaagatagaaaagatagaaacagagagggctaggcaaatggctcaagcaaataatcctattagcaatgacagctcagatagaagatggtctctcgagggaatgaccgctcttgtcacgggtggaaccaaaggcattggatatgctattgtggaggaattggcgaggctaggtgcagaggtccatacttgtgctcggaatgaagtccaactcaatgagcgcttgagtcaatggaagaccaagggttttcatcaagtcactggttctgtatgtgatttgatctcaaagccccaacgagaagagctcataaacaaggtctcatcactgtttaatggaaaactaaacatccttataaacaacgtgggaaccaatatagcaaagcccacaactgattacacagctgaagattattcatttctcatgggaaccaatcttgaatcttattacaatatgtgccaacttgcacatcctctcctcaaagcttcaggagctggtaatattgttctgatatcttctattgctggtgtgatatcaattgggggtagtggaagtgtctatgctgccactaaaggagcaattaaccaattggcaagatacttggcttgcgagtgggcaaaagacaagattaggatcaacagtattgcacctgggtgcatacgaactcccttatctgaagatgctctcaataaccaaacgattcttgaggctgttaactctggaacacctttaggacgccctggcgagccggaagaggtttcttccttggtggcatttctatgcttgcctgctgcctcatacataactgggcagactatttgcattgatggagggatgactgttgatggcatgccaaggctaggaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

295

Amino Acids

31.71

Weight (kDa)

6.0

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AccBSI CCGCTC 1 cut(s) 131
AciI CCGC 1 cut(s) 129
AclWI GGATC 1 cut(s) 659
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 3 cut(s) 444, 489, 714
AcyI GRCGYC 1 cut(s) 754
AfeI AGCGCT 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 878
AgsI TTSAA 2 cut(s) 11, 458
AjnI CCWGG 2 cut(s) 667, 757
AleI CACNNNNGTG 1 cut(s) 670
AluBI AGCT 5 cut(s) 96, 325, 422, 503, 512
AluI AGCT 5 cut(s) 96, 325, 422, 503, 512
Alw21I GWGCWC 2 cut(s) 217, 327
Alw26I GTCTC 2 cut(s) 117, 343
AlwI GGATC 1 cut(s) 659
AlwNI CAGNNNCTG 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 242
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 581, 809
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 202, 881
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 2 cut(s) 202, 881
BalI TGGCCA 1 cut(s) 20
BanII GRGCYC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 2 cut(s) 217, 327
BbvI GCAGC 2 cut(s) 568, 796
BccI CCATC 4 cut(s) 29, 102, 839, 857
BciT130I CCWGG 2 cut(s) 669, 759
BcoDI GTCTC 2 cut(s) 117, 343
BfaI CTAG 3 cut(s) 54, 191, 878
BfoI RGCGCY 1 cut(s) 244
BisI GCNGC 2 cut(s) 582, 810
BlsI GCNGC 2 cut(s) 583, 811
Bme1390I CCNGG 2 cut(s) 669, 759
Bme18I GGWCC 2 cut(s) 202, 881
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 202, 881
BmiI GGNNCC 3 cut(s) 148, 388, 448
BmrFI CCNGG 2 cut(s) 669, 759
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 1 cut(s) 688
BmuI ACTGGG 1 cut(s) 834
BpiI GAAGAC 1 cut(s) 263
BplI GAGNNNNNCTC 2 cut(s) 309, 341
BpuEI CTTGAG 3 cut(s) 51, 265, 743
BsaBI GATNNNNATC 1 cut(s) 650
BsaHI GRCGYC 1 cut(s) 754
BsaI GGTCTC 2 cut(s) 117, 343
BsaJI CCNNGG 5 cut(s) 261, 668, 757, 783, 872
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 1 cut(s) 878
Bse1I ACTGG 2 cut(s) 286, 829
Bse3DI GCAATG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 650
BseBI CCWGG 2 cut(s) 669, 759
BseDI CCNNGG 5 cut(s) 261, 668, 757, 783, 872
BseGI GGATG 3 cut(s) 366, 487, 858
BseJI GATNNNNATC 1 cut(s) 650
BseLI CCNNNNNNNGG 1 cut(s) 878
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 286, 829
BseRI GAGGAG 1 cut(s) 485
BseXI GCAGC 2 cut(s) 568, 796
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 20
BsiHKAI GWGCWC 2 cut(s) 217, 327
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 767
BslI CCNNNNNNNGG 1 cut(s) 878
BsmAI GTCTC 2 cut(s) 117, 343
BsnI GGCC 1 cut(s) 20
Bso31I GGTCTC 2 cut(s) 117, 343
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 217, 327
Bsp143I GATC 2 cut(s) 300, 651
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 110
BspLI GGNNCC 3 cut(s) 148, 388, 448
BspPI GGATC 1 cut(s) 659
BspQI GCTCTTC 1 cut(s) 315
BspTNI GGTCTC 2 cut(s) 117, 343
BsrBI CCGCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 2 cut(s) 286, 829
BssECI CCNNGG 5 cut(s) 261, 668, 757, 783, 872
BssMI GATC 2 cut(s) 300, 651
BssNI GRCGYC 1 cut(s) 754
BssT1I CCWWGG 3 cut(s) 261, 783, 872
Bst2UI CCWGG 2 cut(s) 669, 759
Bst4CI ACNGT 3 cut(s) 348, 659, 859
Bst6I CTCTTC 2 cut(s) 315, 765
BstACI GRCGYC 1 cut(s) 754
BstC8I GCNNGC 5 cut(s) 625, 764, 803, 807, 869
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 3 cut(s) 366, 487, 858
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 2 cut(s) 303, 654
BstMAI GTCTC 2 cut(s) 117, 343
BstMBI GATC 2 cut(s) 300, 651
BstMWI GCNNNNNNNGC 2 cut(s) 93, 509
BstNI CCWGG 2 cut(s) 669, 759
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 2 cut(s) 667, 757
BstV1I GCAGC 2 cut(s) 568, 796
BstV2I GAAGAC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 3 cut(s) 366, 487, 858
BtsIMutI CAGTG 2 cut(s) 279, 344
Cac8I GCNNGC 5 cut(s) 625, 764, 803, 807, 869
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 202, 881
CseI GACGC 1 cut(s) 762
CviAII CATG 2 cut(s) 442, 868
DdeI CTNAG 1 cut(s) 97
DpnI GATC 2 cut(s) 302, 653
DpnII GATC 2 cut(s) 300, 651
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 315, 765
EarI CTCTTC 2 cut(s) 315, 765
Ecl136II GAGCTC 1 cut(s) 325
Eco130I CCWWGG 3 cut(s) 261, 783, 872
Eco24I GRGCYC 1 cut(s) 327
Eco31I GGTCTC 2 cut(s) 117, 343
Eco32I GATATC 2 cut(s) 531, 552
Eco47I GGWCC 2 cut(s) 202, 881
Eco47III AGCGCT 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 325
Eco57I CTGAAG 3 cut(s) 444, 489, 714
Eco88I CYCGRG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 881
EcoRII CCWGG 2 cut(s) 667, 757
EcoRV GATATC 2 cut(s) 531, 552
EcoT14I CCWWGG 3 cut(s) 261, 783, 872
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 3 cut(s) 261, 783, 872
FaeI CATG 2 cut(s) 445, 871
FatI CATG 2 cut(s) 441, 867
Fnu4HI GCNGC 2 cut(s) 582, 810
FokI GGATG 3 cut(s) 353, 474, 865
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 2 cut(s) 582, 810
FspBI CTAG 3 cut(s) 54, 191, 878
GlaI GCGC 1 cut(s) 242
GluI GCNGC 2 cut(s) 582, 810
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 767
HgaI GACGC 1 cut(s) 762
HhaI GCGC 1 cut(s) 243
Hin1I GRCGYC 1 cut(s) 754
Hin1II CATG 2 cut(s) 445, 871
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 3 cut(s) 247, 458, 718
HpaI GTTAAC 1 cut(s) 733
HpaII CCGG 1 cut(s) 767
Hpy166II GTNNAC 1 cut(s) 733
Hpy188I TCNGA 4 cut(s) 100, 219, 528, 694
Hpy188III TCNNGA 6 cut(s) 25, 116, 455, 507, 722, 738
Hpy8I GTNNAC 1 cut(s) 733
HpyCH4III ACNGT 3 cut(s) 348, 659, 859
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 5 cut(s) 197, 485, 665, 675, 840
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 509
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 1 cut(s) 754
Hsp92II CATG 2 cut(s) 445, 871
HspAI GCGC 1 cut(s) 241
KspAI GTTAAC 1 cut(s) 733
Kzo9I GATC 2 cut(s) 300, 651
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 2 cut(s) 509, 593
Lsp1109I GCAGC 2 cut(s) 568, 796
LweI GCATC 1 cut(s) 688
MaeI CTAG 3 cut(s) 54, 191, 878
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 136, 277
MalI GATC 2 cut(s) 302, 653
MbiI CCGCTC 1 cut(s) 131
MboI GATC 2 cut(s) 300, 651
MboII GAAGA 8 cut(s) 117, 268, 332, 437, 525, 707, 771, 782
MfeI CAATTG 2 cut(s) 555, 605
MhlI GDGCHC 2 cut(s) 217, 327
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 5 cut(s) 12, 179, 555, 597, 605
MluNI TGGCCA 1 cut(s) 20
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 253
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 3 cut(s) 351, 600, 732
MslI CAYNNNNRTG 3 cut(s) 210, 670, 796
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 767
MspR9I CCNGG 2 cut(s) 669, 759
MunI CAATTG 2 cut(s) 555, 605
MvaI CCWGG 2 cut(s) 669, 759
MwoI GCNNNNNNNGC 2 cut(s) 93, 509
NdeII GATC 2 cut(s) 300, 651
NlaIII CATG 2 cut(s) 445, 871
NlaIV GGNNCC 3 cut(s) 148, 388, 448
NmuCI GTSAC 2 cut(s) 136, 277
NspI RCATGY 1 cut(s) 871
OliI CACNNNNGTG 1 cut(s) 670
PaeI GCATGC 1 cut(s) 871
PaeR7I CTCGAG 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 315
PfeI GAWTC 2 cut(s) 458, 718
PkrI GCNGC 2 cut(s) 583, 811
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PpuMI RGGWCCY 1 cut(s) 881
PsiI TTATAA 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 881
Psp6I CCWGG 2 cut(s) 667, 757
PspGI CCWGG 2 cut(s) 667, 757
PspN4I GGNNCC 3 cut(s) 148, 388, 448
PspPI GGNCC 2 cut(s) 202, 881
PspPPI RGGWCCY 1 cut(s) 881
PstNI CAGNNNCTG 1 cut(s) 512
PvuII CAGCTG 1 cut(s) 422
RseI CAYNNNNRTG 3 cut(s) 210, 670, 796
SacI GAGCTC 1 cut(s) 327
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 3 cut(s) 351, 600, 732
SatI GCNGC 2 cut(s) 582, 810
Sau3AI GATC 2 cut(s) 300, 651
Sau96I GGNCC 2 cut(s) 202, 881
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 669, 759
SduI GDGCHC 2 cut(s) 217, 327
SfaNI GCATC 1 cut(s) 688
Sfr274I CTCGAG 1 cut(s) 116
SinI GGWCC 2 cut(s) 202, 881
SlaI CTCGAG 1 cut(s) 116
SmiMI CAYNNNNRTG 3 cut(s) 210, 670, 796
SmlI CTYRAG 4 cut(s) 66, 116, 244, 722
SmoI CTYRAG 4 cut(s) 66, 116, 244, 722
SphI GCATGC 1 cut(s) 871
Sse9I AATT 5 cut(s) 12, 179, 555, 597, 605
SsiI CCGC 1 cut(s) 129
SspI AATATT 1 cut(s) 520
SspMI CTAG 3 cut(s) 54, 191, 878
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 667, 757
StyI CCWWGG 3 cut(s) 261, 783, 872
TaaI ACNGT 3 cut(s) 348, 659, 859
TaiI ACGT 1 cut(s) 384
TaqI TCGA 1 cut(s) 117
TasI AATT 5 cut(s) 12, 179, 555, 597, 605
TfiI GAWTC 2 cut(s) 458, 718
Tru1I TTAA 3 cut(s) 351, 600, 732
Tru9I TTAA 3 cut(s) 351, 600, 732
TscAI CASTG 2 cut(s) 286, 351
TseFI GTSAC 2 cut(s) 136, 277
TseI GCWGC 2 cut(s) 581, 809
Tsp45I GTSAC 2 cut(s) 136, 277
TspDTI ATGAA 3 cut(s) 237, 260, 423
TspRI CASTG 2 cut(s) 286, 351
VpaK11BI GGWCC 2 cut(s) 202, 881
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 871
XhoI CTCGAG 1 cut(s) 116
XspI CTAG 3 cut(s) 54, 191, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.