Rh4DG143800

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000208
Physical Location & Seq
Reverse (-)
28608927 .. 28611154
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG143800.1

Sequence Viewer

Length: 924 bp
ATGGCTCAAGCAAATAATCCTATTAGCAATGACAGCTTAGATAGAAGATGGTCTCTTGAGGGAATGACCGCTCTTGTCACGGGTGGAACCAAAGGCATTGGATATGCTGTTGTGGAGGAATTGGCGAGGCTAGGTGCAAAGGTCCATACTTGTGCTCGGAATGAAGTCCTGCTCAATGAGCATTTGAGTCAATGGAAGACCAAGGGTTTTCATCAAGTCACTGGTTCTGTATGTGATTTGATCTCAAAGCCCCAACGGGAAGAGCTCATAAACAAGGTCTCATCACTGTTCAATGGAAAACTAAACATCCTTATAAACAACGTGGGAACCAATATATTAAAGCCCACAACTGACTACACAGATGAAGATTATTCATTTCTTATGGGAACCAATCTTGAATCTTATTACAATATGTGCCAACTTGCACATCCTCTCCTCAAAGCTTCAGGAGCTGGTAATATTGTTCTTATATCTTCTATTGCTGGTGTGATATCAATCGGGGGTAGTGGAAGTGTCTATGCTGCCACTAAAGGTCTTTTTCCTAACCTACTTTTTGACTCTTCAATATTAAATATTTTGTTATCAGAAATTGAAGGTTATTGTCTCTTCTCATTATATATTTCAGGAGCAATTAACCAATTGGCAAGATACTTGGCTTGCGAGTGGGGAAAAGACAAGATTAGGATCAACAGTATTGCACCTGGGTTCATACGAACTCCCTTGGCTGAAGATATTCTCAATAACCAAACGATGCTTGAGGCTATTAACTCTGGAACACCTTTAGGACGCCATGGCCAGCCGGAAGAGGTTTCTTCCTTGGTGGCATTTCTATGCTTTCCTGCCGCCTCATACATAACTGGGCAGACTATCTGCATTGACGGAGGGATGACTGTTAATGGCATAAGCTTATGCTTTCAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

307

Amino Acids

33.08

Weight (kDa)

5.57

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 23 - 178 4.3e-33 short chain dehydrogenase
KR PF08659 23 - 176 6.6e-07 KR domain
adh_short_C2 PF13561 31 - 178 9.5e-23 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 209 - 297 4.5e-29 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AccBSI CCGCTC 1 cut(s) 71
AciI CCGC 2 cut(s) 69, 843
AclWI GGATC 1 cut(s) 692
AcoI YGGCCR 1 cut(s) 793
AcuI CTGAAG 2 cut(s) 429, 747
AcyI GRCGYC 1 cut(s) 787
AgsI TTSAA 5 cut(s) 292, 398, 564, 593, 917
AjnI CCWGG 1 cut(s) 700
AluBI AGCT 5 cut(s) 36, 265, 443, 452, 906
AluI AGCT 5 cut(s) 36, 265, 443, 452, 906
Alw21I GWGCWC 2 cut(s) 157, 267
Alw26I GTCTC 3 cut(s) 57, 283, 608
AlwI GGATC 1 cut(s) 692
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 1 cut(s) 793
ApeKI GCWGC 1 cut(s) 521
Asp700I GAANNNNTTC 1 cut(s) 732
AspS9I GGNCC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 142
BalI TGGCCA 1 cut(s) 795
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 2 cut(s) 157, 267
BbvI GCAGC 1 cut(s) 508
BccI CCATC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 702
BcoDI GTCTC 3 cut(s) 57, 283, 608
BfaI CTAG 2 cut(s) 131, 922
BisI GCNGC 2 cut(s) 522, 843
BlsI GCNGC 2 cut(s) 523, 844
Bme1390I CCNGG 1 cut(s) 702
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 3 cut(s) 88, 328, 388
BmrFI CCNGG 1 cut(s) 702
BmrI ACTGGG 1 cut(s) 867
BmsI GCATC 1 cut(s) 741
BmuI ACTGGG 1 cut(s) 867
BpiI GAAGAC 1 cut(s) 203
BpuEI CTTGAG 2 cut(s) 77, 776
BsaBI GATNNNNATC 2 cut(s) 494, 683
BsaHI GRCGYC 1 cut(s) 787
BsaI GGTCTC 2 cut(s) 57, 283
BsaJI CCNNGG 5 cut(s) 201, 701, 720, 790, 816
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bse1I ACTGG 2 cut(s) 226, 862
Bse3DI GCAATG 1 cut(s) 34
Bse8I GATNNNNATC 2 cut(s) 494, 683
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 5 cut(s) 201, 701, 720, 790, 816
BseGI GGATG 3 cut(s) 306, 427, 891
BseJI GATNNNNATC 2 cut(s) 494, 683
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 2 cut(s) 226, 862
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 508
BshFI GGCC 1 cut(s) 795
BsiHKAI GWGCWC 2 cut(s) 157, 267
BsiSI CCGG 1 cut(s) 800
BsmAI GTCTC 3 cut(s) 57, 283, 608
BsnI GGCC 1 cut(s) 795
Bso31I GGTCTC 2 cut(s) 57, 283
Bsp1286I GDGCHC 2 cut(s) 157, 267
Bsp143I GATC 2 cut(s) 240, 684
Bsp19I CCATGG 1 cut(s) 790
BspACI CCGC 2 cut(s) 69, 843
BspANI GGCC 1 cut(s) 795
BspLI GGNNCC 3 cut(s) 88, 328, 388
BspPI GGATC 1 cut(s) 692
BspQI GCTCTTC 1 cut(s) 255
BspTNI GGTCTC 2 cut(s) 57, 283
BsrBI CCGCTC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 2 cut(s) 226, 862
BssECI CCNNGG 5 cut(s) 201, 701, 720, 790, 816
BssMI GATC 2 cut(s) 240, 684
BssNI GRCGYC 1 cut(s) 787
BssT1I CCWWGG 4 cut(s) 201, 720, 790, 816
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 3 cut(s) 288, 692, 892
Bst6I CTCTTC 4 cut(s) 255, 565, 611, 798
BstACI GRCGYC 1 cut(s) 787
BstC8I GCNNGC 2 cut(s) 658, 797
BstDEI CTNAG 1 cut(s) 37
BstDSI CCRYGG 1 cut(s) 790
BstF5I GGATG 3 cut(s) 306, 427, 891
BstKTI GATC 2 cut(s) 243, 687
BstMAI GTCTC 3 cut(s) 57, 283, 608
BstMBI GATC 2 cut(s) 240, 684
BstMWI GCNNNNNNNGC 4 cut(s) 33, 178, 449, 918
BstNI CCWGG 1 cut(s) 702
BstSCI CCNGG 1 cut(s) 700
BstV1I GCAGC 1 cut(s) 508
BstV2I GAAGAC 1 cut(s) 203
BsuRI GGCC 1 cut(s) 795
BtgI CCRYGG 1 cut(s) 790
BtsCI GGATG 3 cut(s) 306, 427, 891
BtsIMutI CAGTG 2 cut(s) 219, 284
Cac8I GCNNGC 2 cut(s) 658, 797
CaiI CAGNNNCTG 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 1 cut(s) 795
CviAII CATG 1 cut(s) 791
DdeI CTNAG 1 cut(s) 37
DpnI GATC 2 cut(s) 242, 686
DpnII GATC 2 cut(s) 240, 684
EaeI YGGCCR 1 cut(s) 793
Eam1104I CTCTTC 4 cut(s) 255, 565, 611, 798
EarI CTCTTC 4 cut(s) 255, 565, 611, 798
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 4 cut(s) 201, 720, 790, 816
Eco24I GRGCYC 1 cut(s) 267
Eco31I GGTCTC 2 cut(s) 57, 283
Eco32I GATATC 1 cut(s) 492
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 429, 747
EcoICRI GAGCTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 700
EcoRV GATATC 1 cut(s) 492
EcoT14I CCWWGG 4 cut(s) 201, 720, 790, 816
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 4 cut(s) 201, 720, 790, 816
FaeI CATG 1 cut(s) 794
FatI CATG 1 cut(s) 790
Fnu4HI GCNGC 2 cut(s) 522, 843
FokI GGATG 3 cut(s) 293, 414, 898
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 2 cut(s) 522, 843
FspBI CTAG 2 cut(s) 131, 922
GluI GCNGC 2 cut(s) 522, 843
HaeIII GGCC 1 cut(s) 795
HapII CCGG 1 cut(s) 800
HgaI GACGC 1 cut(s) 795
Hin1I GRCGYC 1 cut(s) 787
Hin1II CATG 1 cut(s) 794
HindIII AAGCTT 2 cut(s) 441, 904
HinfI GANTC 3 cut(s) 187, 398, 557
HpaII CCGG 1 cut(s) 800
Hpy188I TCNGA 2 cut(s) 159, 586
Hpy188III TCNNGA 5 cut(s) 56, 395, 447, 624, 771
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 3 cut(s) 288, 692, 892
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 4 cut(s) 137, 425, 698, 873
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 178, 449, 918
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 787
Hsp92II CATG 1 cut(s) 794
Kzo9I GATC 2 cut(s) 240, 684
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 2 cut(s) 449, 626
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 1 cut(s) 741
MaeI CTAG 2 cut(s) 131, 922
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 76, 217
MalI GATC 2 cut(s) 242, 686
MbiI CCGCTC 1 cut(s) 71
MboI GATC 2 cut(s) 240, 684
MfeI CAATTG 1 cut(s) 638
MhlI GDGCHC 2 cut(s) 157, 267
MlsI TGGCCA 1 cut(s) 795
MluCI AATT 4 cut(s) 119, 588, 630, 638
MluNI TGGCCA 1 cut(s) 795
MlyI GAGTC 2 cut(s) 196, 551
MnlI CCTC 9 cut(s) 52, 109, 120, 441, 446, 751, 799, 856, 875
Mox20I TGGCCA 1 cut(s) 795
MroXI GAANNNNTTC 1 cut(s) 732
MscI TGGCCA 1 cut(s) 795
MseI TTAA 5 cut(s) 338, 569, 633, 765, 894
MslI CAYNNNNRTG 2 cut(s) 150, 829
Msp20I TGGCCA 1 cut(s) 795
MspI CCGG 1 cut(s) 800
MspR9I CCNGG 1 cut(s) 702
MunI CAATTG 1 cut(s) 638
MvaI CCWGG 1 cut(s) 702
MwoI GCNNNNNNNGC 4 cut(s) 33, 178, 449, 918
NcoI CCATGG 1 cut(s) 790
NdeII GATC 2 cut(s) 240, 684
NlaIII CATG 1 cut(s) 794
NlaIV GGNNCC 3 cut(s) 88, 328, 388
NmuCI GTSAC 2 cut(s) 76, 217
PciSI GCTCTTC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 2 cut(s) 523, 844
PleI GAGTC 2 cut(s) 195, 551
PpsI GAGTC 2 cut(s) 195, 551
PsiI TTATAA 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 700
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 3 cut(s) 88, 328, 388
PspPI GGNCC 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 452
RseI CAYNNNNRTG 2 cut(s) 150, 829
SacI GAGCTC 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 5 cut(s) 338, 569, 633, 765, 894
SatI GCNGC 2 cut(s) 522, 843
Sau3AI GATC 2 cut(s) 240, 684
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 2 cut(s) 196, 551
ScrFI CCNGG 1 cut(s) 702
SduI GDGCHC 2 cut(s) 157, 267
SfaNI GCATC 1 cut(s) 741
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 2 cut(s) 150, 829
SmlI CTYRAG 3 cut(s) 6, 56, 755
SmoI CTYRAG 3 cut(s) 6, 56, 755
Sse9I AATT 4 cut(s) 119, 588, 630, 638
SsiI CCGC 2 cut(s) 69, 843
SspI AATATT 3 cut(s) 460, 567, 574
SspMI CTAG 2 cut(s) 131, 922
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 700
StyI CCWWGG 4 cut(s) 201, 720, 790, 816
TaaI ACNGT 3 cut(s) 288, 692, 892
TaiI ACGT 1 cut(s) 324
TasI AATT 4 cut(s) 119, 588, 630, 638
TauI GCSGC 1 cut(s) 845
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 5 cut(s) 338, 569, 633, 765, 894
Tru9I TTAA 5 cut(s) 338, 569, 633, 765, 894
TscAI CASTG 2 cut(s) 226, 291
TseFI GTSAC 2 cut(s) 76, 217
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 2 cut(s) 76, 217
TspDTI ATGAA 5 cut(s) 177, 200, 363, 378, 697
TspGWI ACGGA 1 cut(s) 894
TspRI CASTG 2 cut(s) 226, 291
VpaK11BI GGWCC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 2 cut(s) 131, 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.