pycom11g07900

Tropinone reductase homolog At1g07440-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
6054417 .. 6058913
4497 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07900.1

Sequence Viewer

Length: 345 bp
ATGCAGAGATCAATGGCAGAGGTCGCAGATGGTCTCTTGAGGGAAAGACTGCTCGTGTCACTGGTGGAACCAAAGGGATGGGGATATAGGTGTGCTATTGTGGGGGAACTGGTGGGGCTAGGTGCAGCTGTTCATACTTGCTCTCGGAGTCAAGGGCAGCTGGATGATTGCTTGAGTCAATGGCAGGCCAAGGGTTTTCATCAAGTCACTGGTTCAATCTGTGATGTGTCTTCAAGTGCACAAAGGGAGGAGTTAATAAACAAGGTCTCATCACAGTTTAACGAAAAACCTAACATCCTTATAAATAAACAATGTGGGAACTTCCAAATCAAAACCAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.51

Weight (kDa)

7.63

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AgsI TTSAA 2 cut(s) 216, 234
AluBI AGCT 2 cut(s) 128, 160
AluI AGCT 2 cut(s) 128, 160
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 2 cut(s) 38, 271
Alw44I GTGCAC 1 cut(s) 237
AoxI GGCC 1 cut(s) 186
ApaLI GTGCAC 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 125, 157
BaeGI GKGCMC 1 cut(s) 241
BauI CACGAG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 137, 169
BccI CCATC 2 cut(s) 23, 72
BcoDI GTCTC 2 cut(s) 38, 271
BfaI CTAG 1 cut(s) 119
BisI GCNGC 2 cut(s) 126, 158
BlsI GCNGC 2 cut(s) 127, 159
BmiI GGNNCC 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 222
BpuEI CTTGAG 2 cut(s) 58, 193
BsaI GGTCTC 2 cut(s) 38, 271
BsaJI CCNNGG 1 cut(s) 189
Bse1I ACTGG 3 cut(s) 66, 114, 214
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 3 cut(s) 83, 169, 294
BseNI ACTGG 3 cut(s) 66, 114, 214
BseRI GAGGAG 1 cut(s) 263
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 2 cut(s) 137, 169
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 241
BsmAI GTCTC 2 cut(s) 38, 271
BsnI GGCC 1 cut(s) 188
Bso31I GGTCTC 2 cut(s) 38, 271
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 8
BspANI GGCC 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 69
BspTNI GGTCTC 2 cut(s) 38, 271
BsrI ACTGG 3 cut(s) 66, 114, 214
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 276, 341
BstC8I GCNNGC 1 cut(s) 186
BstF5I GGATG 3 cut(s) 83, 169, 294
BstKTI GATC 1 cut(s) 11
BstMAI GTCTC 2 cut(s) 38, 271
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 137, 169
BstV2I GAAGAC 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 78
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 3 cut(s) 83, 169, 294
BtsIMutI CAGTG 2 cut(s) 59, 207
Cac8I GCNNGC 1 cut(s) 186
CviJI RGCY 4 cut(s) 118, 128, 160, 188
CviKI_1 RGCY 4 cut(s) 118, 128, 160, 188
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 189
Eco31I GGTCTC 2 cut(s) 38, 271
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaiI YATR 3 cut(s) 87, 135, 302
Fnu4HI GCNGC 2 cut(s) 126, 158
FokI GGATG 3 cut(s) 90, 176, 281
Fsp4HI GCNGC 2 cut(s) 126, 158
FspBI CTAG 1 cut(s) 119
GluI GCNGC 2 cut(s) 126, 158
HaeIII GGCC 1 cut(s) 188
HinfI GANTC 2 cut(s) 148, 175
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 239
HpyCH4III ACNGT 2 cut(s) 276, 341
HpyCH4V TGCA 3 cut(s) 4, 125, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 5 cut(s) 47, 95, 146, 170, 195
Lsp1109I GCAGC 2 cut(s) 137, 169
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 57, 205
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 241
MlyI GAGTC 2 cut(s) 157, 184
MnlI CCTC 3 cut(s) 13, 33, 241
MseI TTAA 2 cut(s) 254, 279
MspA1I CMGCKG 2 cut(s) 128, 160
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 1 cut(s) 8
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 2 cut(s) 57, 205
PkrI GCNGC 2 cut(s) 127, 159
PleI GAGTC 2 cut(s) 156, 183
PpsI GAGTC 2 cut(s) 156, 183
PsiI TTATAA 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 69
PvuII CAGCTG 2 cut(s) 128, 160
SaqAI TTAA 2 cut(s) 254, 279
SatI GCNGC 2 cut(s) 126, 158
Sau3AI GATC 1 cut(s) 8
SchI GAGTC 2 cut(s) 157, 184
SduI GDGCHC 1 cut(s) 241
SetI ASST 7 cut(s) 24, 92, 124, 130, 162, 267, 292
SmlI CTYRAG 2 cut(s) 37, 172
SmoI CTYRAG 2 cut(s) 37, 172
SspMI CTAG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 276, 341
Tru1I TTAA 2 cut(s) 254, 279
Tru9I TTAA 2 cut(s) 254, 279
TscAI CASTG 2 cut(s) 66, 214
TseFI GTSAC 2 cut(s) 57, 205
TseI GCWGC 2 cut(s) 125, 157
Tsp45I GTSAC 2 cut(s) 57, 205
TspDTI ATGAA 2 cut(s) 122, 188
TspRI CASTG 2 cut(s) 66, 214
VneI GTGCAC 1 cut(s) 237
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.