AT2G29350

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000208
Physical Location & Seq
Forward (+)
12600914 .. 12602556
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29350.1

Sequence Viewer

Length: 810 bp
ATGGCAAAGGAAGGGGGCTTGGGAGAGAACTCAAGATGGAGTCTTGGAGGCATGACCGCTCTTGTCACTGGTGGCTCTAAAGGCATCGGGGAAGCTGTGGTGGAGGAACTAGCCATGTTGGGAGCAAAAGTCCACACGTGTGCCAGAGACGAAACTCAGCTTCAAGAACGCTTACGTGAATGGCAAGCAAAAGGGTTTCAGGTCACCACTTCTGTCTGCGACGTCTCTTCTCGTGACCAACGAGTGAAACTCATGGAAACTGTTTCCTCTCTCTACCAAGGAAAACTCAACATCCTCGTCAACAATGTGGGAACGTCAATATTCAAGCCGACCACAGAGTATACAGCAGAAGATTTCTCTTTTGTAATGGCTACAAATCTCGAGTCAGCTTTCCATCTCTCACAGCTTGCCCACCCATTGTTAAAAGCCTCTGGCTCAGGGAGCATCGTGCTCATATCCTCTGCTGCTGGAGTCGTGCATGTCAATGTTGGATCCATCTATGGAGCAACCAAAGGAGCCATGAATCAGCTGGCTAGAAACTTAGCTTGCGAATGGGCGAGCGACAACATAAGGACGAACTCTGTTTGTCCTTGGTATATCACAACTCCTTTAAGTAACGATTTTTTCGATGAAGAGTTTAAGAAAGAAGCGGTGCGTACGACACCAATGGGGCGTGTTGGAGAAGCAAATGAAGTCTCACCGCTTGTGGCATTTCTTTGTCTTCCTTCAGCTTCTTATATTACTGGTCAGACCATTTGCGTTGACGGCGGTGCCACTGTTAACGGTTTTTCCTTCAAGACTATGCCATAA

Protein Analysis

269

Amino Acids

28.82

Weight (kDa)

5.64

Isoelectric Point (pI)

22.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 19 - 210 1.2e-52 short chain dehydrogenase
KR PF08659 19 - 180 2.3e-14 KR domain
adh_short_C2 PF13561 27 - 259 1e-57 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 770
AccBSI CCGCTC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 341
AciI CCGC 4 cut(s) 57, 650, 701, 768
AclWI GGATC 2 cut(s) 486, 499
AcuI CTGAAG 1 cut(s) 711
AcvI CACGTG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 658
AflIII ACRYGT 2 cut(s) 135, 137
AgsI TTSAA 3 cut(s) 164, 325, 796
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 7 cut(s) 95, 160, 389, 406, 529, 545, 731
AluI AGCT 7 cut(s) 95, 160, 389, 406, 529, 545, 731
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 3 cut(s) 141, 229, 700
AlwI GGATC 2 cut(s) 486, 499
Ama87I CYCGRG 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 464
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
AsuHPI GGTGA 2 cut(s) 196, 690
AvaI CYCGRG 1 cut(s) 380
BamHI GGATCC 1 cut(s) 491
BanI GGYRCC 1 cut(s) 770
BauI CACGAG 1 cut(s) 231
BbrPI CACGTG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 451
BccI CCATC 3 cut(s) 30, 402, 503
BceAI ACGGC 1 cut(s) 781
BcoDI GTCTC 3 cut(s) 141, 229, 700
BfaI CTAG 2 cut(s) 110, 534
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
BmeT110I CYCGRG 1 cut(s) 380
BmiI GGNNCC 3 cut(s) 493, 517, 772
BmsI GCATC 2 cut(s) 93, 453
BpiI GAAGAC 1 cut(s) 713
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 436
BpuEI CTTGAG 1 cut(s) 16
BsaAI YACGTR 2 cut(s) 138, 176
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 277, 590
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bse1I ACTGG 2 cut(s) 73, 748
BseDI CCNNGG 2 cut(s) 277, 590
BseGI GGATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 170, 450
BseNI ACTGG 2 cut(s) 73, 748
BseXI GCAGC 1 cut(s) 451
BshNI GGYRCC 1 cut(s) 770
BsiHKAI GWGCWC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 380
BsiWI CGTACG 1 cut(s) 656
BsmAI GTCTC 3 cut(s) 141, 229, 700
BsmBI CGTCTC 2 cut(s) 141, 229
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 1 cut(s) 491
BspACI CCGC 4 cut(s) 57, 650, 701, 768
BspCNI CTCAG 2 cut(s) 169, 449
BspLI GGNNCC 3 cut(s) 493, 517, 772
BspPI GGATC 2 cut(s) 486, 499
BspT107I GGYRCC 1 cut(s) 770
BsrBI CCGCTC 1 cut(s) 59
BsrI ACTGG 2 cut(s) 73, 748
BssECI CCNNGG 2 cut(s) 277, 590
BssMI GATC 1 cut(s) 491
BssNAI GTATAC 1 cut(s) 342
BssNI GRCGYC 1 cut(s) 222
BssSI CACGAG 1 cut(s) 231
BssT1I CCWWGG 2 cut(s) 277, 590
Bst1107I GTATAC 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 231
Bst4CI ACNGT 3 cut(s) 262, 778, 785
Bst6I CTCTTC 2 cut(s) 232, 627
BstACI GRCGYC 1 cut(s) 222
BstBAI YACGTR 2 cut(s) 138, 176
BstC8I GCNNGC 5 cut(s) 186, 408, 531, 547, 559
BstDEI CTNAG 3 cut(s) 156, 436, 541
BstEII GGTNACC 1 cut(s) 202
BstF5I GGATG 1 cut(s) 291
BstKTI GATC 1 cut(s) 494
BstMAI GTCTC 3 cut(s) 141, 229, 700
BstMBI GATC 1 cut(s) 491
BstMWI GCNNNNNNNGC 3 cut(s) 81, 441, 765
BstNSI RCATGY 1 cut(s) 482
BstPI GGTNACC 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BstZ17I GTATAC 1 cut(s) 342
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 66, 774
Cac8I GCNNGC 5 cut(s) 186, 408, 531, 547, 559
Csp6I GTAC 1 cut(s) 657
CviAII CATG 5 cut(s) 52, 115, 253, 479, 520
CviQI GTAC 1 cut(s) 657
DdeI CTNAG 3 cut(s) 156, 436, 541
DpnI GATC 1 cut(s) 493
DpnII GATC 1 cut(s) 491
Eam1104I CTCTTC 2 cut(s) 232, 627
EarI CTCTTC 2 cut(s) 232, 627
Eco130I CCWWGG 2 cut(s) 277, 590
Eco57I CTGAAG 1 cut(s) 711
Eco72I CACGTG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 380
Eco91I GGTNACC 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 202
EcoT14I CCWWGG 2 cut(s) 277, 590
ErhI CCWWGG 2 cut(s) 277, 590
Esp3I CGTCTC 2 cut(s) 141, 229
FaeI CATG 5 cut(s) 55, 118, 256, 482, 523
FatI CATG 5 cut(s) 51, 114, 252, 478, 519
FblI GTMKAC 1 cut(s) 341
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 2 cut(s) 110, 534
GluI GCNGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 489
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 5 cut(s) 55, 118, 256, 482, 523
HincII GTYRAC 3 cut(s) 301, 763, 781
HindII GTYRAC 3 cut(s) 301, 763, 781
HinfI GANTC 4 cut(s) 40, 383, 471, 523
HpaI GTTAAC 1 cut(s) 781
HphI GGTGA 2 cut(s) 196, 690
Hpy166II GTNNAC 5 cut(s) 133, 301, 342, 763, 781
Hpy188I TCNGA 1 cut(s) 750
Hpy188III TCNNGA 5 cut(s) 33, 164, 233, 380, 796
Hpy8I GTNNAC 5 cut(s) 133, 301, 342, 763, 781
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 3 cut(s) 5, 735, 802
HpyCH4III ACNGT 3 cut(s) 262, 778, 785
HpyCH4IV ACGT 4 cut(s) 137, 175, 222, 314
HpyCH4V TGCA 1 cut(s) 478
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 441, 765
HpyF3I CTNAG 3 cut(s) 156, 436, 541
HpySE526I ACGT 4 cut(s) 137, 175, 222, 314
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 5 cut(s) 55, 118, 256, 482, 523
KspAI GTTAAC 1 cut(s) 781
Kzo9I GATC 1 cut(s) 491
LmnI GCTCC 4 cut(s) 122, 441, 503, 515
LpnPI CCDG 8 cut(s) 54, 157, 185, 417, 423, 453, 515, 729
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 2 cut(s) 93, 453
MaeI CTAG 2 cut(s) 110, 534
MaeII ACGT 4 cut(s) 137, 175, 222, 314
MaeIII GTNAC 4 cut(s) 64, 202, 233, 614
MalI GATC 1 cut(s) 493
MbiI CCGCTC 1 cut(s) 59
MboI GATC 1 cut(s) 491
MboII GAAGA 4 cut(s) 219, 362, 644, 713
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 1 cut(s) 453
MlyI GAGTC 3 cut(s) 49, 392, 480
MmeI TCCRAC 2 cut(s) 469, 658
MnlI CCTC 6 cut(s) 41, 97, 277, 305, 439, 469
MseI TTAA 4 cut(s) 422, 611, 639, 780
MslI CAYNNNNRTG 2 cut(s) 138, 483
MspA1I CMGCKG 1 cut(s) 529
MwoI GCNNNNNNNGC 3 cut(s) 81, 441, 765
NdeII GATC 1 cut(s) 491
NlaIII CATG 5 cut(s) 55, 118, 256, 482, 523
NlaIV GGNNCC 3 cut(s) 493, 517, 772
NmuCI GTSAC 3 cut(s) 64, 202, 233
NspI RCATGY 1 cut(s) 482
OliI CACNNNNGTG 1 cut(s) 138
PaeR7I CTCGAG 1 cut(s) 380
PcsI WCGNNNNNNNCGW 2 cut(s) 238, 624
PfeI GAWTC 1 cut(s) 523
Pfl23II CGTACG 1 cut(s) 656
PkrI GCNGC 1 cut(s) 466
PleI GAGTC 3 cut(s) 48, 391, 479
PmaCI CACGTG 1 cut(s) 138
PmlI CACGTG 1 cut(s) 138
PpsI GAGTC 3 cut(s) 48, 391, 479
Ppu21I YACGTR 2 cut(s) 138, 176
PspCI CACGTG 1 cut(s) 138
PspEI GGTNACC 1 cut(s) 202
PspLI CGTACG 1 cut(s) 656
PspN4I GGNNCC 3 cut(s) 493, 517, 772
PsuI RGATCY 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 529
RsaI GTAC 1 cut(s) 658
RsaNI GTAC 1 cut(s) 657
RseI CAYNNNNRTG 2 cut(s) 138, 483
SaqAI TTAA 4 cut(s) 422, 611, 639, 780
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 1 cut(s) 491
SchI GAGTC 3 cut(s) 49, 392, 480
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 2 cut(s) 93, 453
Sfr274I CTCGAG 1 cut(s) 380
SlaI CTCGAG 1 cut(s) 380
SmiMI CAYNNNNRTG 2 cut(s) 138, 483
SmlI CTYRAG 2 cut(s) 31, 380
SmoI CTYRAG 2 cut(s) 31, 380
SsiI CCGC 4 cut(s) 57, 650, 701, 768
SspI AATATT 1 cut(s) 321
SspMI CTAG 2 cut(s) 110, 534
StyI CCWWGG 2 cut(s) 277, 590
TaaI ACNGT 3 cut(s) 262, 778, 785
TaiI ACGT 4 cut(s) 140, 178, 225, 317
TaqI TCGA 2 cut(s) 381, 627
TfiI GAWTC 1 cut(s) 523
Tru1I TTAA 4 cut(s) 422, 611, 639, 780
Tru9I TTAA 4 cut(s) 422, 611, 639, 780
TscAI CASTG 2 cut(s) 73, 781
TseFI GTSAC 3 cut(s) 64, 202, 233
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 3 cut(s) 64, 202, 233
TspDTI ATGAA 3 cut(s) 536, 645, 705
TspRI CASTG 2 cut(s) 73, 781
XceI RCATGY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XhoI CTCGAG 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 341
XspI CTAG 2 cut(s) 110, 534
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.