AT2G29170

Tropinone reductase homolog At1g07440-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
12541650 .. 12542465
816 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29170.1

Sequence Viewer

Length: 324 bp
ATGGCTAAAGCAGAAGAAAACTTGAGAGACAAATGTAGATGGAGCCTTGGAGGCATGACCGCTCTCGTTACCGGTGGCTCCAAAGGCCTCGGGGAAGCTGTGGTGGAGGAACTAGCCATGTTAGGAGCAAGAGTCCACACATGTGCTAGAAACGAAACTCAGCTTCAAGAATGCGTACGTGAATGGCAAGCTAAAGGGTTTGAGGTCACCACTTCTGTATGCGACGTTTCTTCTCGTGACCAACGAGAGAAACTCATGGAAAACGTTGCCTCTATCTTCCAAGGAAAACTCAACATCCTTGTAAGTTTATGTATAAGAGCATAA

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

6.58

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 20 - 101 9.6e-18 short chain dehydrogenase
KR PF08659 20 - 90 5.1e-09 KR domain
adh_short_C2 PF13561 28 - 102 2.7e-09 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 1 cut(s) 60
AclI AACGTT 1 cut(s) 264
AfaI GTAC 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 140
AgeI ACCGGT 1 cut(s) 71
AgsI TTSAA 1 cut(s) 167
AleI CACNNNNGTG 1 cut(s) 141
AluBI AGCT 3 cut(s) 98, 163, 191
AluI AGCT 3 cut(s) 98, 163, 191
Alw26I GTCTC 1 cut(s) 21
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 85
AsiGI ACCGGT 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 89
BauI CACGAG 1 cut(s) 234
BccI CCATC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 2 cut(s) 113, 147
BglI GCCNNNNNGGC 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 44, 79
BplI GAGNNNNNCTC 2 cut(s) 237, 269
BpuEI CTTGAG 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 179
BsaJI CCNNGG 3 cut(s) 46, 88, 280
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bse118I RCCGGY 1 cut(s) 71
BseDI CCNNGG 3 cut(s) 46, 88, 280
BseGI GGATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 173
BshFI GGCC 1 cut(s) 87
BshTI ACCGGT 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 72
BsiWI CGTACG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 89
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 44, 79
BsrBI CCGCTC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 46, 88, 280
BssSI CACGAG 1 cut(s) 234
BssT1I CCWWGG 2 cut(s) 46, 280
Bst2BI CACGAG 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 159
BstEII GGTNACC 1 cut(s) 205
BstF5I GGATG 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 51, 84
BstNSI RCATGY 1 cut(s) 144
BstPI GGTNACC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 71
Csp6I GTAC 1 cut(s) 176
CspAI ACCGGT 1 cut(s) 71
CviAII CATG 4 cut(s) 55, 118, 141, 256
CviJI RGCY 8 cut(s) 5, 45, 78, 87, 98, 116, 163, 191
CviKI_1 RGCY 8 cut(s) 5, 45, 78, 87, 98, 116, 163, 191
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 159
Eco130I CCWWGG 2 cut(s) 46, 280
Eco147I AGGCCT 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 89
Eco91I GGTNACC 1 cut(s) 205
EcoO65I GGTNACC 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 46, 280
ErhI CCWWGG 2 cut(s) 46, 280
FaeI CATG 4 cut(s) 58, 121, 144, 259
FaiI YATR 8 cut(s) 56, 119, 142, 220, 257, 310, 314, 322
FatI CATG 4 cut(s) 54, 117, 140, 255
FokI GGATG 1 cut(s) 281
FspBI CTAG 2 cut(s) 113, 147
HaeIII GGCC 1 cut(s) 87
HapII CCGG 1 cut(s) 72
Hin1II CATG 4 cut(s) 58, 121, 144, 259
HinfI GANTC 1 cut(s) 132
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 167, 236
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 227
HpyCH4IV ACGT 3 cut(s) 178, 225, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 84
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 3 cut(s) 178, 225, 264
Hsp92II CATG 4 cut(s) 58, 121, 144, 259
LmnI GCTCC 3 cut(s) 42, 83, 125
LpnPI CCDG 1 cut(s) 85
MaeI CTAG 2 cut(s) 113, 147
MaeII ACGT 3 cut(s) 178, 225, 264
MaeIII GTNAC 3 cut(s) 67, 205, 236
MbiI CCGCTC 1 cut(s) 62
MboII GAAGA 3 cut(s) 26, 222, 268
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 5 cut(s) 44, 98, 100, 196, 280
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 51, 84
NlaIII CATG 4 cut(s) 58, 121, 144, 259
NlaIV GGNNCC 2 cut(s) 44, 79
NmuCI GTSAC 2 cut(s) 205, 236
NspI RCATGY 1 cut(s) 144
OliI CACNNNNGTG 1 cut(s) 141
PceI AGGCCT 1 cut(s) 87
PciI ACATGT 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 241
PctI GAATGC 1 cut(s) 176
Pfl23II CGTACG 1 cut(s) 175
PinAI ACCGGT 1 cut(s) 71
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 179
PscI ACATGT 1 cut(s) 140
Psp1406I AACGTT 1 cut(s) 264
PspEI GGTNACC 1 cut(s) 205
PspLI CGTACG 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 44, 79
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 141
SchI GAGTC 1 cut(s) 141
SetI ASST 7 cut(s) 100, 165, 181, 193, 207, 228, 267
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 1 cut(s) 60
SspMI CTAG 2 cut(s) 113, 147
StuI AGGCCT 1 cut(s) 87
StyI CCWWGG 2 cut(s) 46, 280
TaiI ACGT 3 cut(s) 181, 228, 267
TseFI GTSAC 2 cut(s) 205, 236
Tsp45I GTSAC 2 cut(s) 205, 236
XceI RCATGY 1 cut(s) 144
XspI CTAG 2 cut(s) 113, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.