Prupe.6G069900_v2.0.a1

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000208
Physical Location & Seq
Reverse (-)
4794966 .. 4797602
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G069900.1

Sequence Viewer

Length: 795 bp
ATGAGTAGCAGAGAGAGAAGATGGTCTCTGGAGGGATTGACTGCTCTTGTTACTGGTGGAACCAGAGGGATTGGGTATGCTATAGTGGAAGAATTGGCAGGGTTTGGTGCAACTATTCACACTTGTGCTCGGAATGAAGTTGACCTCAATGACTGCTTGAGTCAATGGGAGAAGAAGGGTTTCAAGGTCACTGGTTCAGTGTGTGATGTGGTATCAAAATCCCAAAGAGAGGAGCTTATAAAGAAGCTTTCATCCCTGTTTGATGGGAAACTTAACATCCTTATAAACAATGTGGGAACAAACATAACAAAACCAACGACGGAGTTCACAGCTGAAGATTACACATTTCTTATGAGTACCAATCTTGAATCTGCTTATCATTTGTGCCAACTTGCACATCCTCTGCTCAAAGCTTCAGGAGCCGGCAGCATTGTTTTTCTGTCTTCTGTTGCTGGTGTGATTTCATTGGAAGTTGGATCTATATATTCTGCCGCTAAAGGAGCAATAAATCAATTAGCCAAAAACTTGGCATGCGAGTGGGCAAAAGATAACATAAGAACTAACAGTGTTGCGCCTTGGTTCATCACAACTCCCCTCGGTGACCATTTTCTCGGCAACGAAAAATCTTTGAAGATCATCAAGTCTCGAACCCCATTAAGACGTCCAGGAGAGCCAGAAGAGGTGTCTTCCTTGGTAGCATTTCTGTGCCTACCGGCCGCCTCTTACATAACTGGCCAAACTATTTCCGTCGATGGAGGGGTGACTGTCAATGGCCTACTCTTCCAAGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

265

Amino Acids

28.34

Weight (kDa)

6.9

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 239, 284
AatII GACGTC 1 cut(s) 664
AciI CCGC 2 cut(s) 492, 717
AclWI GGATC 1 cut(s) 484
AcoI YGGCCR 2 cut(s) 714, 733
AcuI CTGAAG 2 cut(s) 354, 399
AcyI GRCGYC 1 cut(s) 661
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 3 cut(s) 184, 368, 631
AjnI CCWGG 1 cut(s) 664
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 4 cut(s) 235, 247, 332, 413
AluI AGCT 4 cut(s) 235, 247, 332, 413
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 30, 648
AlwI GGATC 1 cut(s) 484
AoxI GGCC 3 cut(s) 714, 733, 772
ApeKI GCWGC 1 cut(s) 426
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 574
AsuHPI GGTGA 2 cut(s) 611, 772
BalI TGGCCA 1 cut(s) 735
BbsI GAAGAC 2 cut(s) 435, 678
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 438
BccI CCATC 3 cut(s) 15, 257, 746
BciT130I CCWGG 1 cut(s) 666
BcoDI GTCTC 2 cut(s) 30, 648
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 3 cut(s) 427, 492, 717
BlsI GCNGC 3 cut(s) 428, 493, 718
Bme1390I CCNGG 1 cut(s) 666
BmiI GGNNCC 2 cut(s) 61, 421
BmrFI CCNGG 1 cut(s) 666
BpiI GAAGAC 2 cut(s) 435, 678
BpmI CTGGAG 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 661
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 575, 595, 690, 784
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 2 cut(s) 422, 712
Bse1I ACTGG 3 cut(s) 58, 196, 736
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 4 cut(s) 575, 595, 690, 784
BseGI GGATG 3 cut(s) 251, 276, 397
BseLI CCNNNNNNNGG 1 cut(s) 229
BseNI ACTGG 3 cut(s) 58, 196, 736
BseRI GAGGAG 1 cut(s) 245
BseX3I CGGCCG 1 cut(s) 714
BseXI GCAGC 1 cut(s) 438
Bsh1285I CGRYCG 1 cut(s) 717
BshFI GGCC 3 cut(s) 716, 735, 774
BsiEI CGRYCG 1 cut(s) 717
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 2 cut(s) 423, 713
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 30, 648
BsnI GGCC 3 cut(s) 716, 735, 774
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 476, 633
BspACI CCGC 2 cut(s) 492, 717
BspANI GGCC 3 cut(s) 716, 735, 774
BspLI GGNNCC 2 cut(s) 61, 421
BspPI GGATC 1 cut(s) 484
BspTNI GGTCTC 1 cut(s) 30
BsrFI RCCGGY 2 cut(s) 422, 712
BsrI ACTGG 3 cut(s) 58, 196, 736
BssAI RCCGGY 2 cut(s) 422, 712
BssECI CCNNGG 4 cut(s) 575, 595, 690, 784
BssMI GATC 2 cut(s) 476, 633
BssNI GRCGYC 1 cut(s) 661
BssT1I CCWWGG 3 cut(s) 575, 690, 784
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 2 cut(s) 566, 766
Bst6I CTCTTC 2 cut(s) 672, 785
BstACI GRCGYC 1 cut(s) 661
BstC8I GCNNGC 2 cut(s) 424, 532
BstEII GGTNACC 1 cut(s) 599
BstF5I GGATG 3 cut(s) 251, 276, 397
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 2 cut(s) 479, 636
BstMAI GTCTC 2 cut(s) 30, 648
BstMBI GATC 2 cut(s) 476, 633
BstMCI CGRYCG 1 cut(s) 717
BstMWI GCNNNNNNNGC 2 cut(s) 419, 500
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 534
BstPI GGTNACC 1 cut(s) 599
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 438
BstV2I GAAGAC 2 cut(s) 435, 678
BstX2I RGATCY 1 cut(s) 476
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 1 cut(s) 476
BstZI CGGCCG 1 cut(s) 714
BsuRI GGCC 3 cut(s) 716, 735, 774
BtsCI GGATG 3 cut(s) 251, 276, 397
BtsIMutI CAGTG 3 cut(s) 189, 204, 571
Cac8I GCNNGC 2 cut(s) 424, 532
CfoI GCGC 1 cut(s) 574
Cfr10I RCCGGY 2 cut(s) 422, 712
Csp6I GTAC 1 cut(s) 357
CviAII CATG 2 cut(s) 531, 792
CviQI GTAC 1 cut(s) 357
DpnI GATC 2 cut(s) 478, 635
DpnII GATC 2 cut(s) 476, 633
EaeI YGGCCR 2 cut(s) 714, 733
EagI CGGCCG 1 cut(s) 714
Eam1104I CTCTTC 2 cut(s) 672, 785
EarI CTCTTC 2 cut(s) 672, 785
EclXI CGGCCG 1 cut(s) 714
Eco130I CCWWGG 3 cut(s) 575, 690, 784
Eco31I GGTCTC 1 cut(s) 30
Eco52I CGGCCG 1 cut(s) 714
Eco57I CTGAAG 2 cut(s) 354, 399
Eco91I GGTNACC 1 cut(s) 599
EcoO65I GGTNACC 1 cut(s) 599
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 3 cut(s) 575, 690, 784
ErhI CCWWGG 3 cut(s) 575, 690, 784
FaeI CATG 2 cut(s) 534, 795
FatI CATG 2 cut(s) 530, 791
Fnu4HI GCNGC 3 cut(s) 427, 492, 717
FokI GGATG 3 cut(s) 238, 263, 384
Fsp4HI GCNGC 3 cut(s) 427, 492, 717
GlaI GCGC 1 cut(s) 573
GluI GCNGC 3 cut(s) 427, 492, 717
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 3 cut(s) 716, 735, 774
HapII CCGG 2 cut(s) 423, 713
HhaI GCGC 1 cut(s) 574
Hin1I GRCGYC 1 cut(s) 661
Hin1II CATG 2 cut(s) 534, 795
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 2 cut(s) 245, 411
HinfI GANTC 2 cut(s) 160, 368
HpaII CCGG 2 cut(s) 423, 713
HphI GGTGA 2 cut(s) 611, 772
Hpy166II GTNNAC 2 cut(s) 142, 327
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 4 cut(s) 29, 365, 417, 645
Hpy8I GTNNAC 2 cut(s) 142, 327
Hpy99I CGWCG 2 cut(s) 322, 752
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 566, 766
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 2 cut(s) 110, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 500
HpySE526I ACGT 1 cut(s) 661
Hsp92I GRCGYC 1 cut(s) 661
Hsp92II CATG 2 cut(s) 534, 795
HspAI GCGC 1 cut(s) 572
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
Kzo9I GATC 2 cut(s) 476, 633
LmnI GCTCC 4 cut(s) 232, 419, 500, 788
Lsp1109I GCAGC 1 cut(s) 438
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 4 cut(s) 49, 187, 599, 760
MalI GATC 2 cut(s) 478, 635
MboI GATC 2 cut(s) 476, 633
MboII GAAGA 9 cut(s) 30, 101, 184, 347, 435, 643, 678, 689, 772
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 2 cut(s) 92, 512
MluNI TGGCCA 1 cut(s) 735
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 9 cut(s) 25, 59, 155, 223, 411, 605, 673, 730, 749
Mox20I TGGCCA 1 cut(s) 735
MroNI GCCGGC 1 cut(s) 422
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 735
MseI TTAA 2 cut(s) 273, 656
MslI CAYNNNNRTG 3 cut(s) 123, 535, 703
Msp20I TGGCCA 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 2 cut(s) 423, 713
MspR9I CCNGG 1 cut(s) 666
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 2 cut(s) 419, 500
NaeI GCCGGC 1 cut(s) 424
NdeII GATC 2 cut(s) 476, 633
NgoMIV GCCGGC 1 cut(s) 422
NlaIII CATG 2 cut(s) 534, 795
NlaIV GGNNCC 2 cut(s) 61, 421
NmeAIII GCCGAG 1 cut(s) 591
NmuCI GTSAC 3 cut(s) 187, 599, 760
NspI RCATGY 1 cut(s) 534
OliI CACNNNNGTG 1 cut(s) 123
PaeI GCATGC 1 cut(s) 534
PdiI GCCGGC 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 368
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 3 cut(s) 428, 493, 718
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PsiI TTATAA 2 cut(s) 239, 284
Psp6I CCWGG 1 cut(s) 664
PspEI GGTNACC 1 cut(s) 599
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 2 cut(s) 61, 421
PsuI RGATCY 1 cut(s) 476
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 3 cut(s) 123, 535, 703
SaqAI TTAA 2 cut(s) 273, 656
SatI GCNGC 3 cut(s) 427, 492, 717
Sau3AI GATC 2 cut(s) 476, 633
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 1 cut(s) 130
SetI ASST 8 cut(s) 147, 189, 237, 249, 334, 415, 664, 684
SfcI CTRYAG 1 cut(s) 81
SmiMI CAYNNNNRTG 3 cut(s) 123, 535, 703
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
SphI GCATGC 1 cut(s) 534
Sse9I AATT 2 cut(s) 92, 512
SsiI CCGC 2 cut(s) 492, 717
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 3 cut(s) 575, 690, 784
TaaI ACNGT 2 cut(s) 566, 766
TaiI ACGT 1 cut(s) 664
TaqI TCGA 2 cut(s) 646, 750
TasI AATT 2 cut(s) 92, 512
TauI GCSGC 2 cut(s) 494, 719
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 2 cut(s) 273, 656
Tru9I TTAA 2 cut(s) 273, 656
TscAI CASTG 3 cut(s) 196, 204, 571
TseFI GTSAC 3 cut(s) 187, 599, 760
TseI GCWGC 1 cut(s) 426
Tsp45I GTSAC 3 cut(s) 187, 599, 760
TspDTI ATGAA 4 cut(s) 150, 240, 453, 571
TspGWI ACGGA 2 cut(s) 335, 736
TspRI CASTG 3 cut(s) 196, 204, 571
XceI RCATGY 1 cut(s) 534
XmnI GAANNNNTTC 1 cut(s) 179
ZraI GACGTC 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.