Rmu_sc0032361.1_g000001

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032361.1
OG0000208
Physical Location & Seq
Reverse (-)
2 .. 998
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032361.1_g000001.1.cds

Sequence Viewer

Length: 484 bp
atgaggtatgctattgtggaagaattggctggactaggggcaagcgttcatacttgtgctcgaaatgaagtcctactcaatgactgcttgagtcaatggaagttgaagggttttcataaagttactggttcgatctgtgatatggtcttaaaaacccaacgtgaggagctaatacacagggtctcattgctgtttaatgggaagcttaacatccttataaacaacgtgggaacaaatataccaaaaccaacaaccgagtacgcagctgaagattactcatttatcatgagtaccaatcttgaatccacataccacttgtgccaacttgcacatcctcttctcaaagattcaggagctggtaacataattcttttgtcatctgttgctggtgtggtatcacttgggaatgttgggagtatatatgctgccactaaaggagcaatgaatcaattggcaaaaaacttggcgtgtgaatgggcgaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

161

Amino Acids

17.49

Weight (kDa)

7.66

Isoelectric Point (pI)

28.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 2 cut(s) 260, 292
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 2 cut(s) 106, 302
AluBI AGCT 4 cut(s) 169, 205, 266, 356
AluI AGCT 4 cut(s) 169, 205, 266, 356
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 356
ApeKI GCWGC 2 cut(s) 263, 425
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 275, 412
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 35
BisI GCNGC 2 cut(s) 264, 426
BlsI GCNGC 2 cut(s) 265, 427
BpuEI CTTGAG 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 2 cut(s) 185, 447
BseGI GGATG 2 cut(s) 210, 331
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMI GCAATG 2 cut(s) 185, 447
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 275, 412
BsiHKAI GWGCWC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 1 cut(s) 132
BspHI TCATGA 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 187
BsrDI GCAATG 2 cut(s) 185, 447
BsrI ACTGG 1 cut(s) 130
BssMI GATC 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 43
BstF5I GGATG 2 cut(s) 210, 331
BstKTI GATC 1 cut(s) 135
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 275, 412
BtsCI GGATG 2 cut(s) 210, 331
Cac8I GCNNGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 356
CciI TCATGA 1 cut(s) 285
Csp6I GTAC 2 cut(s) 259, 291
CviAII CATG 1 cut(s) 286
CviJI RGCY 5 cut(s) 29, 169, 205, 266, 356
CviKI_1 RGCY 5 cut(s) 29, 169, 205, 266, 356
CviQI GTAC 2 cut(s) 259, 291
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 288
FaeI CATG 1 cut(s) 289
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 264, 426
FokI GGATG 2 cut(s) 197, 318
Fsp4HI GCNGC 2 cut(s) 264, 426
FspBI CTAG 1 cut(s) 35
GluI GCNGC 2 cut(s) 264, 426
Hin1II CATG 1 cut(s) 289
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 4 cut(s) 91, 302, 347, 445
Hpy188III TCNNGA 3 cut(s) 286, 299, 351
HpyAV CCTTC 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 160, 225
HpyCH4V TGCA 1 cut(s) 329
HpySE526I ACGT 2 cut(s) 160, 225
Hsp92II CATG 1 cut(s) 289
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 3 cut(s) 166, 353, 437
LpnPI CCDG 6 cut(s) 15, 111, 163, 336, 342, 372
Lsp1109I GCAGC 2 cut(s) 275, 412
MaeI CTAG 1 cut(s) 35
MaeII ACGT 2 cut(s) 160, 225
MaeIII GTNAC 2 cut(s) 121, 359
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 3 cut(s) 32, 281, 329
MfeI CAATTG 1 cut(s) 449
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 3 cut(s) 23, 366, 449
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 2 cut(s) 157, 345
MseI TTAA 3 cut(s) 149, 195, 207
MslI CAYNNNNRTG 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 266
MunI CAATTG 1 cut(s) 449
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 289
PagI TCATGA 1 cut(s) 285
PfeI GAWTC 3 cut(s) 302, 347, 445
PkrI GCNGC 2 cut(s) 265, 427
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PsiI TTATAA 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 260, 292
RsaNI GTAC 2 cut(s) 259, 291
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 3 cut(s) 149, 195, 207
SatI GCNGC 2 cut(s) 264, 426
Sau3AI GATC 1 cut(s) 132
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 61
SetI ASST 7 cut(s) 8, 163, 171, 207, 228, 268, 358
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 3 cut(s) 23, 366, 449
SspMI CTAG 1 cut(s) 35
TaiI ACGT 2 cut(s) 163, 228
TaqI TCGA 2 cut(s) 61, 131
TasI AATT 3 cut(s) 23, 366, 449
TfiI GAWTC 3 cut(s) 302, 347, 445
Tru1I TTAA 3 cut(s) 149, 195, 207
Tru9I TTAA 3 cut(s) 149, 195, 207
TseI GCWGC 2 cut(s) 263, 425
TspDTI ATGAA 4 cut(s) 38, 81, 104, 458
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.