AT1G07440

Tropinone reductase homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
2286185 .. 2287791
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07440.2

Sequence Viewer

Length: 801 bp
ATGGCTGGAGCAGAGCAAAGCCAGAGATGGAGCCTTAAGGCCAAGACCGTACTTGTAACCGGTGGAACAAAAGGCATCGGGCATGCTATAGTAGAGGAATTTGCAGGATTTGGAGCAGTAATACATACTTGTGCTAGAAACGAATATGAGCTTAACGAGTGTTTAAGCAAATGGCAAAAGAAGGGTTTTCAAGTCACTGGTTCGGTCTGTGACGCATCTTTGAGACCAGAGAGAGAAAAGCTAATGCAGACTGTGTCTTCAATGTTTGGTGGAAAGCTCGATATCCTCATAAACAATTTGGGAGCGATTCGGTCAAAACCAACGCTGGATTACACAGCAGAAGATTTCTCGTTTCATATTTCGACAAACTTAGAATCTGCTTATCATCTGAGCCAGCTTGCGCATCCTCTGCTTAAGGCTTCAGGATGTGGGAACATAATTTTCATGTCCTCTATTGCTGGAGTTGTATCTGCTAGTGTCGGCTCCATCTACTCTGCAACGAAAGGGGCATTGAATCAGCTAGCAAGGAACTTGGCATGTGAGTGGGCTAGTGATGGCATTAGGGCTAATGCTGTGGCTCCTGCAGTCATCGCAACTCCTTTGGCTGAAGCTGTGTATGATGATGAGTTCAAGAAAGTGGTGATATCAAGAAAGCCGTTGGGGCGTTTCGGGGAGCCTGAAGAAGTGTCCTCGCTTGTGGCTTTTCTATGTATGCCTGCAGCTTCTTATATAACTGGTCAAACCATTTGTGTCGATGGAGGTCTCACTGTCAATGGCTTCTCCTATCAGCCACAAGGTTAA

Protein Analysis

266

Amino Acids

28.33

Weight (kDa)

6.52

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 169 1.3e-35 short chain dehydrogenase
KR PF08659 16 - 167 1.1e-10 KR domain
adh_short_C2 PF13561 24 - 169 1.1e-22 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 402
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 3 cut(s) 405, 627, 699
AfaI GTAC 1 cut(s) 51
AflII CTTAAG 2 cut(s) 35, 413
AgeI ACCGGT 1 cut(s) 59
AgsI TTSAA 4 cut(s) 191, 261, 514, 631
AluBI AGCT 7 cut(s) 151, 241, 277, 397, 520, 611, 722
AluI AGCT 7 cut(s) 151, 241, 277, 397, 520, 611, 722
Alw26I GTCTC 2 cut(s) 217, 767
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 719
ApoI RAATTY 1 cut(s) 98
AsiGI ACCGGT 1 cut(s) 59
AspLEI GCGC 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 652
AsuNHI GCTAGC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 731
BccI CCATC 4 cut(s) 21, 494, 548, 749
BceAI ACGGC 1 cut(s) 640
BcoDI GTCTC 2 cut(s) 217, 767
BfaI CTAG 4 cut(s) 135, 474, 521, 549
BfmI CTRYAG 3 cut(s) 87, 582, 717
BfrI CTTAAG 2 cut(s) 35, 413
BglI GCCNNNNNGGC 1 cut(s) 661
BisI GCNGC 1 cut(s) 720
BlsI GCNGC 1 cut(s) 721
BmiI GGNNCC 4 cut(s) 32, 484, 579, 675
BmsI GCATC 3 cut(s) 84, 224, 412
BmtI GCTAGC 1 cut(s) 524
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 2 cut(s) 27, 480
BsaI GGTCTC 2 cut(s) 217, 767
BsaWI WCCGGW 1 cut(s) 59
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 202, 739
BseGI GGATG 2 cut(s) 403, 431
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 2 cut(s) 202, 739
BseXI GCAGC 1 cut(s) 731
BshFI GGCC 1 cut(s) 41
BshTI ACCGGT 1 cut(s) 59
BsiSI CCGG 1 cut(s) 60
BsmAI GTCTC 2 cut(s) 217, 767
BsnI GGCC 1 cut(s) 41
Bso31I GGTCTC 2 cut(s) 217, 767
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 381
BspLI GGNNCC 4 cut(s) 32, 484, 579, 675
BspMAI CTGCAG 2 cut(s) 586, 721
BspOI GCTAGC 1 cut(s) 524
BspTI CTTAAG 2 cut(s) 35, 413
BspTNI GGTCTC 2 cut(s) 217, 767
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 2 cut(s) 202, 739
BssAI RCCGGY 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 49, 253, 769
BstAFI CTTAAG 2 cut(s) 35, 413
BstAPI GCANNNNNTGC 1 cut(s) 409
BstC8I GCNNGC 5 cut(s) 84, 395, 399, 522, 717
BstDEI CTNAG 2 cut(s) 370, 389
BstF5I GGATG 2 cut(s) 403, 431
BstHHI GCGC 1 cut(s) 403
BstMAI GTCTC 2 cut(s) 217, 767
BstMWI GCNNNNNNNGC 3 cut(s) 409, 590, 661
BstNSI RCATGY 2 cut(s) 86, 540
BstSFI CTRYAG 3 cut(s) 87, 582, 717
BstV1I GCAGC 1 cut(s) 731
BstV2I GAAGAC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 574
BtsCI GGATG 2 cut(s) 403, 431
BtsIMutI CAGTG 2 cut(s) 195, 765
Cac8I GCNNGC 5 cut(s) 84, 395, 399, 522, 717
CfoI GCGC 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 59
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 50
CspAI ACCGGT 1 cut(s) 59
CviAII CATG 3 cut(s) 83, 445, 537
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 2 cut(s) 370, 389
Eco31I GGTCTC 2 cut(s) 217, 767
Eco32I GATATC 2 cut(s) 283, 645
Eco57I CTGAAG 3 cut(s) 405, 627, 699
EcoRV GATATC 2 cut(s) 283, 645
FaeI CATG 3 cut(s) 86, 448, 540
FatI CATG 3 cut(s) 82, 444, 536
Fnu4HI GCNGC 1 cut(s) 720
FokI GGATG 2 cut(s) 390, 438
Fsp4HI GCNGC 1 cut(s) 720
FspBI CTAG 4 cut(s) 135, 474, 521, 549
FspI TGCGCA 1 cut(s) 402
GlaI GCGC 1 cut(s) 402
GluI GCNGC 1 cut(s) 720
GsuI CTGGAG 2 cut(s) 27, 480
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 403
Hin1II CATG 3 cut(s) 86, 448, 540
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HinfI GANTC 3 cut(s) 307, 374, 514
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 652
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 3 cut(s) 423, 631, 648
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 3 cut(s) 49, 253, 769
HpyCH4V TGCA 5 cut(s) 104, 247, 497, 584, 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 409, 590, 661
HpyF3I CTNAG 2 cut(s) 370, 389
Hsp92II CATG 3 cut(s) 86, 448, 540
HspAI GCGC 1 cut(s) 401
LmnI GCTCC 7 cut(s) 8, 30, 113, 302, 488, 583, 673
Lsp1109I GCAGC 1 cut(s) 731
LweI GCATC 3 cut(s) 84, 224, 412
MaeI CTAG 4 cut(s) 135, 474, 521, 549
MaeIII GTNAC 3 cut(s) 55, 193, 209
MboII GAAGA 3 cut(s) 249, 353, 692
MluCI AATT 3 cut(s) 98, 295, 438
MnlI CCTC 6 cut(s) 88, 296, 417, 460, 700, 752
MseI TTAA 5 cut(s) 36, 153, 164, 414, 799
MslI CAYNNNNRTG 2 cut(s) 129, 541
MspCI CTTAAG 2 cut(s) 35, 413
MspI CCGG 1 cut(s) 60
MwoI GCNNNNNNNGC 3 cut(s) 409, 590, 661
NheI GCTAGC 1 cut(s) 520
NlaIII CATG 3 cut(s) 86, 448, 540
NlaIV GGNNCC 4 cut(s) 32, 484, 579, 675
NmuCI GTSAC 2 cut(s) 193, 209
NsbI TGCGCA 1 cut(s) 402
NspI RCATGY 2 cut(s) 86, 540
PaeI GCATGC 1 cut(s) 86
PfeI GAWTC 3 cut(s) 307, 374, 514
PflFI GACNNNGTC 1 cut(s) 253
PinAI ACCGGT 1 cut(s) 59
PkrI GCNGC 1 cut(s) 721
PspN4I GGNNCC 4 cut(s) 32, 484, 579, 675
PstI CTGCAG 2 cut(s) 586, 721
PsyI GACNNNGTC 1 cut(s) 253
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 2 cut(s) 129, 541
SaqAI TTAA 5 cut(s) 36, 153, 164, 414, 799
SatI GCNGC 1 cut(s) 720
SetI ASST 9 cut(s) 153, 243, 279, 399, 522, 613, 724, 763, 799
SfaNI GCATC 3 cut(s) 84, 224, 412
SfcI CTRYAG 3 cut(s) 87, 582, 717
SmiMI CAYNNNNRTG 2 cut(s) 129, 541
SmlI CTYRAG 2 cut(s) 35, 413
SmoI CTYRAG 2 cut(s) 35, 413
SphI GCATGC 1 cut(s) 86
Sse9I AATT 3 cut(s) 98, 295, 438
SspMI CTAG 4 cut(s) 135, 474, 521, 549
TaaI ACNGT 3 cut(s) 49, 253, 769
TaqI TCGA 3 cut(s) 279, 362, 753
TaqII GACCGA 2 cut(s) 193, 300
TasI AATT 3 cut(s) 98, 295, 438
TfiI GAWTC 3 cut(s) 307, 374, 514
Tru1I TTAA 5 cut(s) 36, 153, 164, 414, 799
Tru9I TTAA 5 cut(s) 36, 153, 164, 414, 799
TscAI CASTG 2 cut(s) 202, 772
TseFI GTSAC 2 cut(s) 193, 209
TseI GCWGC 1 cut(s) 719
Tsp45I GTSAC 2 cut(s) 193, 209
TspDTI ATGAA 2 cut(s) 344, 433
TspRI CASTG 2 cut(s) 202, 772
Tth111I GACNNNGTC 1 cut(s) 253
Vha464I CTTAAG 2 cut(s) 35, 413
XapI RAATTY 1 cut(s) 98
XceI RCATGY 2 cut(s) 86, 540
XspI CTAG 4 cut(s) 135, 474, 521, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.