RLG00000008649

Tropinone reductase homolog At1g07440-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
34103121 .. 34107901
4781 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008649

Sequence Viewer

Length: 837 bp
ATGGCTCAATATGGCGGAGGAAGAAGATGGTCTCTTGAAGGAATGACTGCTCTCGTCACTGGTGGAACCAAAGGGATCGGGTATGCGATTGTTGAGGAATTGGCTGGATTAGGTGCAAGTGTACATACTTGTTCACGGAATGAAGCCCAGCTCAATGAATGCTTGAATCAATGGAAGAAGAAGGGTTTTCATCAAGTCACTGGTTCAGTGTGTGATGTGGTCTCAAAAATCCAAAGAGAGGAACTAATACAGAAGGTCTCATCACTGTTTCATGGGAAACTTAATATTCTTATAAACAACGTGGGAACTTATATAGGAAAGCCAACAACTGAGTACACAGCTGAAGACTACTCATTTATCATGAGTACGAATCTTGAATCTACTTACACTATGTGCCAACTAGCACATCCTCTTCTCAAAACTTCAGGAGCTGGTAACATTATTTTTCTGTCTTCTGTTGGTGGTGTGATCTCAATGGGGGAGGGTACGAGTTCAACCAAACACTCCACCCATTACCCACCACTCTCCCTTCAACTCCATACAAACTTCTCTGTGGCATTTCATCGAACATCTTTCGTGCAACCTTCCTCTCTAATCTCCCACACCCTCTTCGACCTCCACAAAATCTCTCATTTGTCCATCAATTCACATCCCACATTGACTTCCACTTCCTCAAAATTGAAAGCCAATGCCTCACTGCATACCTTCTCGGAAACCTTCCTTGGGGCTCCTGAAGCAAGTCGTCGACACTGGCATTGCTTTGATTCAGGAGATTTTGACTCGCTAGATCGCGCAAACCGGCATCATTTTGGACTTGCTGGTAAGTGCTTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

279

Amino Acids

30.34

Weight (kDa)

8.5

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 16 - 161 6.2e-31 short chain dehydrogenase
KR PF08659 16 - 159 1.3e-07 KR domain
adh_short_C2 PF13561 24 - 160 4.2e-22 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AccI GTMKAC 1 cut(s) 745
AccII CGCG 1 cut(s) 792
AciI CCGC 1 cut(s) 15
AclWI GGATC 1 cut(s) 83
AcuI CTGAAG 3 cut(s) 363, 408, 753
AdeI CACNNNGTG 1 cut(s) 393
AfaI GTAC 4 cut(s) 123, 335, 367, 487
AfiI CCNNNNNNNGG 2 cut(s) 238, 723
AgsI TTSAA 6 cut(s) 38, 166, 377, 495, 533, 682
AjuI GAANNNNNNNTTGG 2 cut(s) 705, 737
AluBI AGCT 3 cut(s) 151, 341, 431
AluI AGCT 3 cut(s) 151, 341, 431
Alw26I GTCTC 3 cut(s) 36, 226, 262
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 431
AspLEI GCGC 1 cut(s) 794
BanII GRGCYC 1 cut(s) 730
BbsI GAAGAC 2 cut(s) 351, 444
BccI CCATC 2 cut(s) 21, 647
BcoDI GTCTC 3 cut(s) 36, 226, 262
BfaI CTAG 2 cut(s) 401, 785
BmiI GGNNCC 2 cut(s) 67, 729
BmsI GCATC 1 cut(s) 811
BpiI GAAGAC 2 cut(s) 351, 444
BsaI GGTCTC 3 cut(s) 36, 226, 262
BsaJI CCNNGG 1 cut(s) 721
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 723
Bse118I RCCGGY 1 cut(s) 798
Bse1I ACTGG 3 cut(s) 64, 205, 755
Bse3DI GCAATG 1 cut(s) 754
BseDI CCNNGG 1 cut(s) 721
BseGI GGATG 2 cut(s) 406, 649
BseLI CCNNNNNNNGG 2 cut(s) 238, 723
BseMI GCAATG 1 cut(s) 754
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 3 cut(s) 64, 205, 755
BseYI CCCAGC 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 792
BsiSI CCGG 1 cut(s) 799
BslI CCNNNNNNNGG 2 cut(s) 238, 723
BsmAI GTCTC 3 cut(s) 36, 226, 262
BsmI GAATGC 1 cut(s) 164
Bso31I GGTCTC 3 cut(s) 36, 226, 262
Bsp1286I GDGCHC 1 cut(s) 730
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 3 cut(s) 75, 468, 787
BspACI CCGC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 792
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 2 cut(s) 67, 729
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 3 cut(s) 36, 226, 262
BsrDI GCAATG 1 cut(s) 754
BsrFI RCCGGY 1 cut(s) 798
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 3 cut(s) 64, 205, 755
BssAI RCCGGY 1 cut(s) 798
BssECI CCNNGG 1 cut(s) 721
BssMI GATC 3 cut(s) 75, 468, 787
BssT1I CCWWGG 1 cut(s) 721
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 2 cut(s) 417, 614
BstAUI TGTACA 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 830
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 406, 649
BstFNI CGCG 1 cut(s) 792
BstHHI GCGC 1 cut(s) 794
BstKTI GATC 3 cut(s) 78, 471, 790
BstMAI GTCTC 3 cut(s) 36, 226, 262
BstMBI GATC 3 cut(s) 75, 468, 787
BstMWI GCNNNNNNNGC 1 cut(s) 734
BstUI CGCG 1 cut(s) 792
BstV2I GAAGAC 2 cut(s) 351, 444
BtsCI GGATG 2 cut(s) 406, 649
BtsI GCAGTG 1 cut(s) 695
BtsIMutI CAGTG 6 cut(s) 57, 198, 213, 263, 695, 748
Cac8I GCNNGC 1 cut(s) 830
CaiI CAGNNNCTG 1 cut(s) 431
CciI TCATGA 1 cut(s) 360
CfoI GCGC 1 cut(s) 794
Cfr10I RCCGGY 1 cut(s) 798
Csp6I GTAC 4 cut(s) 122, 334, 366, 486
CviAII CATG 2 cut(s) 272, 361
CviJI RGCY 9 cut(s) 5, 104, 146, 151, 322, 341, 431, 686, 728
CviKI_1 RGCY 9 cut(s) 5, 104, 146, 151, 322, 341, 431, 686, 728
CviQI GTAC 4 cut(s) 122, 334, 366, 486
DdeI CTNAG 1 cut(s) 330
DpnI GATC 3 cut(s) 77, 470, 789
DpnII GATC 3 cut(s) 75, 468, 787
DraIII CACNNNGTG 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 417, 614
EarI CTCTTC 2 cut(s) 417, 614
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 721
Eco24I GRGCYC 1 cut(s) 730
Eco31I GGTCTC 3 cut(s) 36, 226, 262
Eco57I CTGAAG 3 cut(s) 363, 408, 753
EcoT14I CCWWGG 1 cut(s) 721
EcoT38I GRGCYC 1 cut(s) 730
ErhI CCWWGG 1 cut(s) 721
FaeI CATG 2 cut(s) 275, 364
FatI CATG 2 cut(s) 271, 360
FblI GTMKAC 1 cut(s) 745
FokI GGATG 2 cut(s) 393, 636
FriOI GRGCYC 1 cut(s) 730
FspBI CTAG 2 cut(s) 401, 785
GlaI GCGC 1 cut(s) 793
GsaI CCCAGC 1 cut(s) 151
HapII CCGG 1 cut(s) 799
HhaI GCGC 1 cut(s) 794
Hin1II CATG 2 cut(s) 275, 364
Hin6I GCGC 1 cut(s) 792
HinP1I GCGC 1 cut(s) 792
HincII GTYRAC 1 cut(s) 746
HindII GTYRAC 1 cut(s) 746
HinfI GANTC 5 cut(s) 166, 370, 377, 764, 779
HpaII CCGG 1 cut(s) 799
Hpy166II GTNNAC 4 cut(s) 122, 134, 336, 746
Hpy188I TCNGA 1 cut(s) 712
Hpy188III TCNNGA 6 cut(s) 35, 361, 374, 426, 731, 768
Hpy8I GTNNAC 4 cut(s) 122, 134, 336, 746
Hpy99I CGWCG 1 cut(s) 747
HpyAV CCTTC 7 cut(s) 32, 175, 247, 539, 594, 715, 727
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 116, 580, 700
HpyF10VI GCNNNNNNNGC 1 cut(s) 734
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 2 cut(s) 275, 364
HspAI GCGC 1 cut(s) 792
Kzo9I GATC 3 cut(s) 75, 468, 787
LmnI GCTCC 2 cut(s) 428, 733
LweI GCATC 1 cut(s) 811
MaeI CTAG 2 cut(s) 401, 785
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 3 cut(s) 55, 196, 434
MalI GATC 3 cut(s) 77, 470, 789
MboI GATC 3 cut(s) 75, 468, 787
MboII GAAGA 8 cut(s) 33, 36, 187, 190, 356, 404, 444, 601
MhlI GDGCHC 1 cut(s) 730
MluCI AATT 3 cut(s) 98, 643, 677
MlyI GAGTC 1 cut(s) 773
MseI TTAA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 1 cut(s) 799
Mva1269I GAATGC 1 cut(s) 164
MvnI CGCG 1 cut(s) 792
MwoI GCNNNNNNNGC 1 cut(s) 734
NdeII GATC 3 cut(s) 75, 468, 787
NlaIII CATG 2 cut(s) 275, 364
NlaIV GGNNCC 2 cut(s) 67, 729
NmuCI GTSAC 2 cut(s) 55, 196
PagI TCATGA 1 cut(s) 360
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 4 cut(s) 166, 370, 377, 764
PleI GAGTC 1 cut(s) 773
PpsI GAGTC 1 cut(s) 773
PsiI TTATAA 1 cut(s) 293
PspFI CCCAGC 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 67, 729
PstNI CAGNNNCTG 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 4 cut(s) 123, 335, 367, 487
RsaNI GTAC 4 cut(s) 122, 334, 366, 486
SalI GTCGAC 1 cut(s) 744
SaqAI TTAA 1 cut(s) 282
Sau3AI GATC 3 cut(s) 75, 468, 787
SchI GAGTC 1 cut(s) 773
SduI GDGCHC 1 cut(s) 730
SfaNI GCATC 1 cut(s) 811
Sse9I AATT 3 cut(s) 98, 643, 677
SsiI CCGC 1 cut(s) 15
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 401, 785
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 1 cut(s) 267
TaiI ACGT 1 cut(s) 303
TaqI TCGA 3 cut(s) 565, 612, 745
TasI AATT 3 cut(s) 98, 643, 677
TatI WGTACW 2 cut(s) 121, 333
TfiI GAWTC 4 cut(s) 166, 370, 377, 764
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 6 cut(s) 64, 205, 213, 270, 702, 755
TseFI GTSAC 2 cut(s) 55, 196
Tsp45I GTSAC 2 cut(s) 55, 196
TspDTI ATGAA 5 cut(s) 156, 171, 179, 260, 551
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 6 cut(s) 64, 205, 213, 270, 702, 755
XmiI GTMKAC 1 cut(s) 745
XspI CTAG 2 cut(s) 401, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.