Prupe.6G070000_v2.0.a1

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000208
Physical Location & Seq
Reverse (-)
4802316 .. 4804789
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G070000.1

Sequence Viewer

Length: 720 bp
ATGAGTAGCAGAGAGAAAAGATGGTCTCTTGAGGGATTAACTGCTCTTGTTACCGGTGGAACCAAAGGGATTGGGTATGCTATAGTGGAAGAATTGGCAGGGCTAGGTGCAACTATTCATACTTGTGCTCGGAATGAAGTTGACCTCAACGACTGCTTGAGTCAATGGGGGAAGAAGGGTTTCAAGGTCACTGGTTCAGTCTGTGATGTGGTGTCAAAAACCCAAAGAGAGGAGCTTATAAACAAAGTCTCATCATTGTTTGATGGAAAACTTAACATCCTTATAAACAATGTGGGAACTAACATACCAAAACCGACAACGGAGTACACAGCTGAAGATTACACATTTCTTATGAGTACCAATCTTGAATCTGCTTATCACTTGTGCCAACTTGCACATCCTTTGCTCAAAGCTTCAGGAGCCGGAGCAATGAATCAATTAGCCAAAAACTTGGCATGTGAGTGGGCAAAAGATAACATAAGGACTAATAGTGTTGCACCTTGGTTCATCAAAACTCTCCTCGGTGATCATTTTCTCGGCCACGAAAAAACTCTGAAGATCATCAACTCTCGAACACCGTTAGGACGCCCTGGAGAGCCAGAAGAGGTGTCAGCCTTGGTGGCATTTCTATGCCTACCGGCAGCCTCTTACATAACTGGCCAAACTATTTGCGTTGACGGAGGGGTGACTGTGAATGGCCTCCTCTTCCAAGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

240

Amino Acids

25.73

Weight (kDa)

6.52

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 239, 284
AcoI YGGCCR 2 cut(s) 538, 658
AcuI CTGAAG 3 cut(s) 354, 399, 575
AcyI GRCGYC 1 cut(s) 586
AfaI GTAC 2 cut(s) 326, 358
AfiI CCNNNNNNNGG 1 cut(s) 229
AgeI ACCGGT 1 cut(s) 53
AgsI TTSAA 2 cut(s) 184, 368
AjnI CCWGG 1 cut(s) 589
AluBI AGCT 3 cut(s) 235, 332, 413
AluI AGCT 3 cut(s) 235, 332, 413
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 30, 253
AoxI GGCC 3 cut(s) 538, 658, 697
ApeKI GCWGC 1 cut(s) 641
AsiGI ACCGGT 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 536, 697
BalI TGGCCA 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 653
BccI CCATC 2 cut(s) 15, 257
BciT130I CCWGG 1 cut(s) 591
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 2 cut(s) 30, 253
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 81
BglI GCCNNNNNGGC 1 cut(s) 620
BisI GCNGC 1 cut(s) 642
BlsI GCNGC 1 cut(s) 643
Bme1390I CCNGG 1 cut(s) 591
BmiI GGNNCC 2 cut(s) 61, 421
BmrFI CCNGG 1 cut(s) 591
BpmI CTGGAG 1 cut(s) 612
BpuEI CTTGAG 2 cut(s) 50, 178
BsaHI GRCGYC 1 cut(s) 586
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 5 cut(s) 500, 520, 589, 615, 709
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 2 cut(s) 53, 637
Bse1I ACTGG 2 cut(s) 196, 661
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 5 cut(s) 500, 520, 589, 615, 709
BseGI GGATG 2 cut(s) 276, 397
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 435
BseNI ACTGG 2 cut(s) 196, 661
BseRI GAGGAG 3 cut(s) 245, 509, 692
BseXI GCAGC 1 cut(s) 653
BshFI GGCC 3 cut(s) 540, 660, 699
BshTI ACCGGT 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 3 cut(s) 54, 423, 638
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 30, 253
BsnI GGCC 3 cut(s) 540, 660, 699
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 526, 558
BspANI GGCC 3 cut(s) 540, 660, 699
BspLI GGNNCC 2 cut(s) 61, 421
BspTNI GGTCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 2 cut(s) 53, 637
BsrI ACTGG 2 cut(s) 196, 661
BssAI RCCGGY 2 cut(s) 53, 637
BssECI CCNNGG 5 cut(s) 500, 520, 589, 615, 709
BssMI GATC 2 cut(s) 526, 558
BssNI GRCGYC 1 cut(s) 586
BssT1I CCWWGG 3 cut(s) 500, 615, 709
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 2 cut(s) 579, 691
Bst6I CTCTTC 2 cut(s) 597, 710
BstACI GRCGYC 1 cut(s) 586
BstF5I GGATG 2 cut(s) 276, 397
BstKTI GATC 2 cut(s) 529, 561
BstMAI GTCTC 2 cut(s) 30, 253
BstMBI GATC 2 cut(s) 526, 558
BstMWI GCNNNNNNNGC 2 cut(s) 419, 620
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 459
BstSCI CCNGG 1 cut(s) 589
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 653
BstXI CCANNNNNNTGG 1 cut(s) 451
BsuRI GGCC 3 cut(s) 540, 660, 699
BtsCI GGATG 2 cut(s) 276, 397
BtsIMutI CAGTG 1 cut(s) 189
Cfr10I RCCGGY 2 cut(s) 53, 637
CseI GACGC 1 cut(s) 594
Csp6I GTAC 2 cut(s) 325, 357
CspAI ACCGGT 1 cut(s) 53
CviAII CATG 2 cut(s) 456, 717
CviQI GTAC 2 cut(s) 325, 357
DpnI GATC 2 cut(s) 528, 560
DpnII GATC 2 cut(s) 526, 558
EaeI YGGCCR 2 cut(s) 538, 658
Eam1104I CTCTTC 2 cut(s) 597, 710
EarI CTCTTC 2 cut(s) 597, 710
Eco130I CCWWGG 3 cut(s) 500, 615, 709
Eco31I GGTCTC 1 cut(s) 30
Eco57I CTGAAG 3 cut(s) 354, 399, 575
EcoRII CCWGG 1 cut(s) 589
EcoT14I CCWWGG 3 cut(s) 500, 615, 709
ErhI CCWWGG 3 cut(s) 500, 615, 709
FaeI CATG 2 cut(s) 459, 720
FatI CATG 2 cut(s) 455, 716
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 1 cut(s) 642
FokI GGATG 2 cut(s) 263, 384
Fsp4HI GCNGC 1 cut(s) 642
FspBI CTAG 1 cut(s) 104
GluI GCNGC 1 cut(s) 642
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 3 cut(s) 540, 660, 699
HapII CCGG 3 cut(s) 54, 423, 638
HgaI GACGC 1 cut(s) 594
Hin1I GRCGYC 1 cut(s) 586
Hin1II CATG 2 cut(s) 459, 720
HincII GTYRAC 2 cut(s) 142, 676
HindII GTYRAC 2 cut(s) 142, 676
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 3 cut(s) 160, 368, 433
HpaII CCGG 3 cut(s) 54, 423, 638
HphI GGTGA 2 cut(s) 536, 697
Hpy166II GTNNAC 3 cut(s) 142, 327, 676
Hpy188I TCNGA 2 cut(s) 132, 555
Hpy188III TCNNGA 4 cut(s) 29, 365, 417, 570
Hpy8I GTNNAC 3 cut(s) 142, 327, 676
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 579, 691
HpyCH4V TGCA 3 cut(s) 110, 395, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 620
Hsp92I GRCGYC 1 cut(s) 586
Hsp92II CATG 2 cut(s) 459, 720
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 2 cut(s) 526, 558
LmnI GCTCC 4 cut(s) 232, 419, 425, 713
Lsp1109I GCAGC 1 cut(s) 653
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 3 cut(s) 49, 187, 685
MalI GATC 2 cut(s) 528, 560
MboI GATC 2 cut(s) 526, 558
MboII GAAGA 6 cut(s) 101, 184, 347, 568, 614, 697
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 2 cut(s) 92, 437
MluNI TGGCCA 1 cut(s) 660
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 9 cut(s) 25, 155, 223, 530, 598, 655, 674, 710, 713
Mox20I TGGCCA 1 cut(s) 660
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 660
MseI TTAA 2 cut(s) 38, 273
MslI CAYNNNNRTG 3 cut(s) 123, 460, 628
Msp20I TGGCCA 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 3 cut(s) 54, 423, 638
MspR9I CCNGG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 591
MwoI GCNNNNNNNGC 2 cut(s) 419, 620
NdeII GATC 2 cut(s) 526, 558
NlaIII CATG 2 cut(s) 459, 720
NlaIV GGNNCC 2 cut(s) 61, 421
NmeAIII GCCGAG 1 cut(s) 516
NmuCI GTSAC 2 cut(s) 187, 685
NspI RCATGY 1 cut(s) 459
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 368, 433
PinAI ACCGGT 1 cut(s) 53
PkrI GCNGC 1 cut(s) 643
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PsiI TTATAA 2 cut(s) 239, 284
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 2 cut(s) 61, 421
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 2 cut(s) 326, 358
RsaNI GTAC 2 cut(s) 325, 357
RseI CAYNNNNRTG 3 cut(s) 123, 460, 628
SaqAI TTAA 2 cut(s) 38, 273
SatI GCNGC 1 cut(s) 642
Sau3AI GATC 2 cut(s) 526, 558
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 591
SduI GDGCHC 1 cut(s) 130
SetI ASST 8 cut(s) 109, 147, 189, 237, 334, 415, 502, 609
SfcI CTRYAG 1 cut(s) 81
SmiMI CAYNNNNRTG 3 cut(s) 123, 460, 628
SmlI CTYRAG 2 cut(s) 29, 157
SmoI CTYRAG 2 cut(s) 29, 157
Sse9I AATT 2 cut(s) 92, 437
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 589
StyI CCWWGG 3 cut(s) 500, 615, 709
TaaI ACNGT 2 cut(s) 579, 691
TaqI TCGA 1 cut(s) 571
TasI AATT 2 cut(s) 92, 437
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 2 cut(s) 368, 433
Tru1I TTAA 2 cut(s) 38, 273
Tru9I TTAA 2 cut(s) 38, 273
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 2 cut(s) 187, 685
TseI GCWGC 1 cut(s) 641
Tsp45I GTSAC 2 cut(s) 187, 685
TspDTI ATGAA 4 cut(s) 107, 150, 446, 496
TspGWI ACGGA 2 cut(s) 335, 693
TspRI CASTG 1 cut(s) 196
XceI RCATGY 1 cut(s) 459
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.