Rh4BG147900

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000208
Physical Location & Seq
Reverse (-)
26401599 .. 26403035
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG147900.1

Sequence Viewer

Length: 636 bp
ATGGCGAGAACAGATATCAATAGCAGAAATAGGAGATGGTCTCTTGAGGGGATGACTGCACTTGTCACCGGTGGAACCAAAGGGATTGGGTATGCTATTGTGGAGGAATTGGCTGGACTAGGGGCAAGCGTACATACTTGTGCTAGAAATGAAGTCCTACTCAATGACTGCTTGAGTCAATGGAAGTTGAAGGGTTTTCATCAAGTTACTGATTCGATCTGTGATATGGTCTTAAAAACCCAACGAGAGGAGCTAATGCACAAGATCTCATTACTGTTTAATGGGAAACTTAACATCCTTATAAACAACGTGGGAACAAATATATCAAAACCAACAACCGAGTACACAGCTGAAGATTACTCATTTATAATGAGTACCAATCTTGAATCCACATACCACTTGTGCCAACTTGCACATCCTCTTCTCAAAGATTCAGGAACTGGAGCAATGAATCAATTGGCAAAAAACTTGGCTTGTGAATGGGCGAAAGATAAGATAAGGACTAACAGTGTTGCACCTTGGTTCATCAGAACTCCCCTCGCTGAACCATATCTGAATGATGTAAAAACTTTGGAGGCCGTGAACTCTCGAACCAAGGGCGGCCTGGAGAGCCAGAAGAGGTGTCTGCATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

211

Amino Acids

23.59

Weight (kDa)

8.51

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 19 - 148 2.6e-22 short chain dehydrogenase
adh_short_C2 PF13561 27 - 146 1.6e-14 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 149 - 198 1.2e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 302, 368
AciI CCGC 1 cut(s) 600
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 3 cut(s) 132, 344, 376
AfiI CCNNNNNNNGG 1 cut(s) 247
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 2 cut(s) 190, 386
AjnI CCWGG 1 cut(s) 603
AluBI AGCT 2 cut(s) 253, 350
AluI AGCT 2 cut(s) 253, 350
Alw26I GTCTC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 2 cut(s) 576, 601
AsiGI ACCGGT 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 58
BccI CCATC 1 cut(s) 30
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 1 cut(s) 605
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 2 cut(s) 119, 144
BglII AGATCT 1 cut(s) 264
BisI GCNGC 1 cut(s) 601
BlsI GCNGC 1 cut(s) 602
Bme1390I CCNGG 1 cut(s) 605
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 605
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpmI CTGGAG 2 cut(s) 462, 626
BpuEI CTTGAG 2 cut(s) 65, 193
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 518, 594
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 445
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 605
BseDI CCNNGG 2 cut(s) 518, 594
BseGI GGATG 3 cut(s) 57, 294, 415
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMI GCAATG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 1 cut(s) 263
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 2 cut(s) 578, 603
BshTI ACCGGT 1 cut(s) 68
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 45
BsnI GGCC 2 cut(s) 578, 603
Bso31I GGTCTC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 216, 264
BspACI CCGC 1 cut(s) 600
BspANI GGCC 2 cut(s) 578, 603
BspLI GGNNCC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 518, 594
BssMI GATC 2 cut(s) 216, 264
BssT1I CCWWGG 2 cut(s) 518, 594
Bst2UI CCWGG 1 cut(s) 605
Bst4CI ACNGT 2 cut(s) 276, 509
Bst6I CTCTTC 2 cut(s) 426, 611
BstC8I GCNNGC 1 cut(s) 127
BstF5I GGATG 3 cut(s) 57, 294, 415
BstKTI GATC 2 cut(s) 219, 267
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 216, 264
BstMWI GCNNNNNNNGC 1 cut(s) 609
BstNI CCWGG 1 cut(s) 605
BstSCI CCNGG 1 cut(s) 603
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BsuRI GGCC 2 cut(s) 578, 603
BtsCI GGATG 3 cut(s) 57, 294, 415
BtsIMutI CAGTG 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 440
Cfr10I RCCGGY 1 cut(s) 68
Csp6I GTAC 3 cut(s) 131, 343, 375
CspAI ACCGGT 1 cut(s) 68
CviJI RGCY 7 cut(s) 113, 253, 350, 473, 578, 603, 612
CviKI_1 RGCY 7 cut(s) 113, 253, 350, 473, 578, 603, 612
CviQI GTAC 3 cut(s) 131, 343, 375
DpnI GATC 2 cut(s) 218, 266
DpnII GATC 2 cut(s) 216, 264
Eam1104I CTCTTC 2 cut(s) 426, 611
EarI CTCTTC 2 cut(s) 426, 611
Eco130I CCWWGG 2 cut(s) 518, 594
Eco31I GGTCTC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 603
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 518, 594
ErhI CCWWGG 2 cut(s) 518, 594
FaiI YATR 8 cut(s) 93, 135, 227, 302, 323, 368, 394, 550
Fnu4HI GCNGC 1 cut(s) 601
FokI GGATG 3 cut(s) 64, 281, 402
Fsp4HI GCNGC 1 cut(s) 601
FspBI CTAG 2 cut(s) 119, 144
GluI GCNGC 1 cut(s) 601
GsuI CTGGAG 2 cut(s) 462, 626
HaeIII GGCC 2 cut(s) 578, 603
HapII CCGG 1 cut(s) 69
HinfI GANTC 5 cut(s) 175, 212, 386, 431, 451
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 345, 583
Hpy188I TCNGA 2 cut(s) 530, 555
Hpy188III TCNNGA 4 cut(s) 44, 383, 435, 588
Hpy8I GTNNAC 2 cut(s) 345, 583
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 276, 509
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 5 cut(s) 59, 259, 413, 515, 628
HpyF10VI GCNNNNNNNGC 1 cut(s) 609
HpySE526I ACGT 1 cut(s) 309
Kzo9I GATC 2 cut(s) 216, 264
LmnI GCTCC 2 cut(s) 250, 443
LpnPI CCDG 7 cut(s) 82, 99, 420, 426, 590, 617, 626
MaeI CTAG 2 cut(s) 119, 144
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 64, 205
MalI GATC 2 cut(s) 218, 266
MboI GATC 2 cut(s) 216, 264
MboII GAAGA 3 cut(s) 365, 413, 628
MfeI CAATTG 1 cut(s) 455
MflI RGATCY 1 cut(s) 264
MluCI AATT 2 cut(s) 107, 455
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 7 cut(s) 40, 97, 241, 429, 548, 568, 612
MseI TTAA 3 cut(s) 233, 279, 291
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 605
MunI CAATTG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 605
MwoI GCNNNNNNNGC 1 cut(s) 609
NdeII GATC 2 cut(s) 216, 264
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 64
PfeI GAWTC 4 cut(s) 212, 386, 431, 451
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 1 cut(s) 602
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PsiI TTATAA 2 cut(s) 302, 368
Psp6I CCWGG 1 cut(s) 603
PspGI CCWGG 1 cut(s) 603
PspN4I GGNNCC 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 264
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 3 cut(s) 132, 344, 376
RsaNI GTAC 3 cut(s) 131, 343, 375
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 3 cut(s) 233, 279, 291
SatI GCNGC 1 cut(s) 601
Sau3AI GATC 2 cut(s) 216, 264
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 605
SetI ASST 5 cut(s) 255, 312, 352, 520, 623
SgrAI CRCCGGYG 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 2 cut(s) 44, 172
SmoI CTYRAG 2 cut(s) 44, 172
Sse9I AATT 2 cut(s) 107, 455
SsiI CCGC 1 cut(s) 600
SspMI CTAG 2 cut(s) 119, 144
StyD4I CCNGG 1 cut(s) 603
StyI CCWWGG 2 cut(s) 518, 594
TaaI ACNGT 2 cut(s) 276, 509
TaiI ACGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 215, 589
TasI AATT 2 cut(s) 107, 455
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 603
TfiI GAWTC 4 cut(s) 212, 386, 431, 451
Tru1I TTAA 3 cut(s) 233, 279, 291
Tru9I TTAA 3 cut(s) 233, 279, 291
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 4 cut(s) 165, 188, 464, 514
TspRI CASTG 1 cut(s) 514
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XspI CTAG 2 cut(s) 119, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.