Prupe.6G069100_v2.0.a1

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000208
Physical Location & Seq
Reverse (-)
4742622 .. 4745046
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G069100.1

Sequence Viewer

Length: 837 bp
ATGGGAGTGAGTGAAAGAGAGAGAGAGAGAGAGATGGCTAAGGCAGATATCAGTCGTAGATGGTCTCTTCAAGGAATGACTGCTCTTGTCACTGGTGGAACCAAAGGAATGGGGCATGCTATTGTGGAGGAATTGTCGGGTCTAGGTGCATCTGTACATACTTGTGCTCGGAACCAAAACCAGCTCAATGACTGCTTGAATCAATGGAAGACCAAGGGTTTTCATCAAGTCACTGGTTCCGTTTGTGATCTTTCATCAAGAGCCCAACGACATGAGCTCATAAACGAAGTCTCATCACAGTTTAACGGGAAACTTAATATCCTTATAAACAATGTGGGAACTACAGAAGCAAAAGCAACACTCGATTGCACAGCAGAAGATTTCGCATTTGTTACGAGTACCAATCTTGAATCCTCTTACCATTTGTCCCAACTCGCACATCCTCTTTTGAAAGCTGCAGGAGCTGGTAACATTGTTTTTATCTCTTCTGTTGCTGGATCGGTCTCAGTTGCAGGGATTGGAAGCATATATGCTGCCACCAAAGGTGCAGTAAACCAATTGGCAAGATCCTTTGCTTGTGAGTGGGGCAAAGATAACATAAGGGTCAACAGCGTTGCACCTTGGTTCATCAAAACATCCCTTTCTGTTGATTTTCTGAATAATGAACAATTTTCAAATGCTGTCAACTCTCGAACCCCGCTAGGACGGCCGGGAGAGCCGGAAGAGGTAGCAGCCCTCGTGTCATTTCTATGCCTCCCTGCAGCTTCTTACATAACTGGGCAGACTATTTGCGCTGACGGGGGTATGACCGTCAATGGCTTCCTCTTCCAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

279

Amino Acids

29.63

Weight (kDa)

6.31

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AciI CCGC 1 cut(s) 698
AclWI GGATC 2 cut(s) 505, 561
AcoI YGGCCR 1 cut(s) 707
AfaI GTAC 2 cut(s) 156, 400
AgsI TTSAA 5 cut(s) 71, 199, 410, 451, 675
AluBI AGCT 5 cut(s) 184, 277, 455, 464, 764
AluI AGCT 5 cut(s) 184, 277, 455, 464, 764
Alw21I GWGCWC 2 cut(s) 169, 279
Alw26I GTCTC 3 cut(s) 69, 295, 508
AlwI GGATC 2 cut(s) 505, 561
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 1 cut(s) 707
ApeKI GCWGC 4 cut(s) 455, 533, 731, 761
AspLEI GCGC 1 cut(s) 794
AsuC2I CCSGG 1 cut(s) 711
BanII GRGCYC 2 cut(s) 265, 279
BauI CACGAG 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 169, 279
BbvI GCAGC 4 cut(s) 442, 520, 743, 773
BccI CCATC 2 cut(s) 28, 54
BceAI ACGGC 1 cut(s) 722
BcnI CCSGG 1 cut(s) 711
BcoDI GTCTC 3 cut(s) 69, 295, 508
BfaI CTAG 2 cut(s) 143, 701
BfmI CTRYAG 3 cut(s) 342, 456, 759
BisI GCNGC 4 cut(s) 456, 534, 732, 762
BlsI GCNGC 4 cut(s) 457, 535, 733, 763
Bme1390I CCNGG 1 cut(s) 711
BmiI GGNNCC 3 cut(s) 100, 173, 238
BmrFI CCNGG 1 cut(s) 711
BmrI ACTGGG 1 cut(s) 786
BmsI GCATC 1 cut(s) 158
BmuI ACTGGG 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 711
BsaI GGTCTC 2 cut(s) 69, 508
BsaJI CCNNGG 3 cut(s) 213, 620, 829
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bse1I ACTGG 3 cut(s) 97, 238, 781
BseDI CCNNGG 3 cut(s) 213, 620, 829
BseGI GGATG 2 cut(s) 439, 635
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 3 cut(s) 97, 238, 781
BseX3I CGGCCG 1 cut(s) 707
BseXI GCAGC 4 cut(s) 442, 520, 743, 773
BsgI GTGCAG 1 cut(s) 567
Bsh1285I CGRYCG 1 cut(s) 710
BshFI GGCC 1 cut(s) 709
BsiEI CGRYCG 1 cut(s) 710
BsiHKAI GWGCWC 2 cut(s) 169, 279
BsiSI CCGG 2 cut(s) 710, 719
BslFI GGGAC 1 cut(s) 412
BsmAI GTCTC 3 cut(s) 69, 295, 508
BsmFI GGGAC 1 cut(s) 412
BsnI GGCC 1 cut(s) 709
Bso31I GGTCTC 2 cut(s) 69, 508
Bsp1286I GDGCHC 3 cut(s) 169, 265, 279
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 3 cut(s) 247, 497, 566
BspACI CCGC 1 cut(s) 698
BspANI GGCC 1 cut(s) 709
BspCNI CTCAG 1 cut(s) 518
BspLI GGNNCC 3 cut(s) 100, 173, 238
BspMAI CTGCAG 2 cut(s) 460, 763
BspPI GGATC 2 cut(s) 505, 561
BspTNI GGTCTC 2 cut(s) 69, 508
BsrGI TGTACA 1 cut(s) 154
BsrI ACTGG 3 cut(s) 97, 238, 781
BssECI CCNNGG 3 cut(s) 213, 620, 829
BssMI GATC 3 cut(s) 247, 497, 566
BssSI CACGAG 1 cut(s) 737
BssT1I CCWWGG 3 cut(s) 213, 620, 829
Bst2BI CACGAG 1 cut(s) 737
Bst4CI ACNGT 2 cut(s) 300, 811
Bst6I CTCTTC 4 cut(s) 72, 490, 717, 830
BstAUI TGTACA 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 39, 505
BstF5I GGATG 2 cut(s) 439, 635
BstHHI GCGC 1 cut(s) 794
BstKTI GATC 3 cut(s) 250, 500, 569
BstMAI GTCTC 3 cut(s) 69, 295, 508
BstMBI GATC 3 cut(s) 247, 497, 566
BstMCI CGRYCG 1 cut(s) 710
BstMWI GCNNNNNNNGC 3 cut(s) 461, 706, 715
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 709
BstSFI CTRYAG 3 cut(s) 342, 456, 759
BstV1I GCAGC 4 cut(s) 442, 520, 743, 773
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 566
BstXI CCANNNNNNTGG 1 cut(s) 109
BstYI RGATCY 1 cut(s) 566
BstZI CGGCCG 1 cut(s) 707
BsuRI GGCC 1 cut(s) 709
BtsCI GGATG 2 cut(s) 439, 635
BtsIMutI CAGTG 2 cut(s) 90, 231
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 464
CfoI GCGC 1 cut(s) 794
Csp6I GTAC 2 cut(s) 155, 399
CviAII CATG 2 cut(s) 116, 272
CviQI GTAC 2 cut(s) 155, 399
DdeI CTNAG 2 cut(s) 39, 505
DpnI GATC 3 cut(s) 249, 499, 568
DpnII GATC 3 cut(s) 247, 497, 566
EaeI YGGCCR 1 cut(s) 707
EagI CGGCCG 1 cut(s) 707
Eam1104I CTCTTC 4 cut(s) 72, 490, 717, 830
EarI CTCTTC 4 cut(s) 72, 490, 717, 830
Ecl136II GAGCTC 1 cut(s) 277
EclXI CGGCCG 1 cut(s) 707
Eco130I CCWWGG 3 cut(s) 213, 620, 829
Eco24I GRGCYC 2 cut(s) 265, 279
Eco31I GGTCTC 2 cut(s) 69, 508
Eco32I GATATC 1 cut(s) 49
Eco52I CGGCCG 1 cut(s) 707
Eco53kI GAGCTC 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 277
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 3 cut(s) 213, 620, 829
EcoT38I GRGCYC 2 cut(s) 265, 279
ErhI CCWWGG 3 cut(s) 213, 620, 829
FaeI CATG 2 cut(s) 119, 275
FaqI GGGAC 1 cut(s) 412
FatI CATG 2 cut(s) 115, 271
FauI CCCGC 1 cut(s) 705
Fnu4HI GCNGC 4 cut(s) 456, 534, 732, 762
FokI GGATG 2 cut(s) 426, 622
FriOI GRGCYC 2 cut(s) 265, 279
Fsp4HI GCNGC 4 cut(s) 456, 534, 732, 762
FspBI CTAG 2 cut(s) 143, 701
GlaI GCGC 1 cut(s) 793
GluI GCNGC 4 cut(s) 456, 534, 732, 762
HaeIII GGCC 1 cut(s) 709
HapII CCGG 2 cut(s) 710, 719
HhaI GCGC 1 cut(s) 794
Hin1II CATG 2 cut(s) 119, 275
Hin6I GCGC 1 cut(s) 792
HinP1I GCGC 1 cut(s) 792
HincII GTYRAC 2 cut(s) 607, 685
HindII GTYRAC 2 cut(s) 607, 685
HinfI GANTC 2 cut(s) 199, 410
HpaII CCGG 2 cut(s) 710, 719
Hpy166II GTNNAC 3 cut(s) 553, 607, 685
Hpy188I TCNGA 2 cut(s) 171, 657
Hpy188III TCNNGA 3 cut(s) 258, 407, 690
Hpy8I GTNNAC 3 cut(s) 553, 607, 685
HpyCH4III ACNGT 2 cut(s) 300, 811
HpyCH4V TGCA 7 cut(s) 149, 369, 458, 512, 548, 617, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 461, 706, 715
HpyF3I CTNAG 2 cut(s) 39, 505
Hsp92II CATG 2 cut(s) 119, 275
HspAI GCGC 1 cut(s) 792
Kzo9I GATC 3 cut(s) 247, 497, 566
LmnI GCTCC 1 cut(s) 461
Lsp1109I GCAGC 4 cut(s) 442, 520, 743, 773
LweI GCATC 1 cut(s) 158
MaeI CTAG 2 cut(s) 143, 701
MaeIII GTNAC 4 cut(s) 88, 229, 391, 467
MalI GATC 3 cut(s) 249, 499, 568
MboI GATC 3 cut(s) 247, 497, 566
MboII GAAGA 6 cut(s) 59, 220, 389, 477, 734, 817
MfeI CAATTG 1 cut(s) 557
MflI RGATCY 1 cut(s) 566
MhlI GDGCHC 3 cut(s) 169, 265, 279
MluCI AATT 3 cut(s) 131, 557, 668
MnlI CCTC 7 cut(s) 121, 424, 453, 718, 746, 764, 833
MseI TTAA 2 cut(s) 303, 315
MslI CAYNNNNRTG 2 cut(s) 162, 748
MspI CCGG 2 cut(s) 710, 719
MspR9I CCNGG 1 cut(s) 711
MunI CAATTG 1 cut(s) 557
MwoI GCNNNNNNNGC 3 cut(s) 461, 706, 715
NciI CCSGG 1 cut(s) 711
NdeII GATC 3 cut(s) 247, 497, 566
NlaIII CATG 2 cut(s) 119, 275
NlaIV GGNNCC 3 cut(s) 100, 173, 238
NmuCI GTSAC 2 cut(s) 88, 229
NspI RCATGY 1 cut(s) 119
PaeI GCATGC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 199, 410
PkrI GCNGC 4 cut(s) 457, 535, 733, 763
PsiI TTATAA 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 279
PspN4I GGNNCC 3 cut(s) 100, 173, 238
PstI CTGCAG 2 cut(s) 460, 763
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 1 cut(s) 566
RsaI GTAC 2 cut(s) 156, 400
RsaNI GTAC 2 cut(s) 155, 399
RseI CAYNNNNRTG 2 cut(s) 162, 748
SacI GAGCTC 1 cut(s) 279
SaqAI TTAA 2 cut(s) 303, 315
SatI GCNGC 4 cut(s) 456, 534, 732, 762
Sau3AI GATC 3 cut(s) 247, 497, 566
ScrFI CCNGG 1 cut(s) 711
SduI GDGCHC 3 cut(s) 169, 265, 279
SetI ASST 9 cut(s) 148, 186, 279, 457, 466, 547, 622, 729, 766
SfaNI GCATC 1 cut(s) 158
SfcI CTRYAG 3 cut(s) 342, 456, 759
SmiMI CAYNNNNRTG 2 cut(s) 162, 748
SphI GCATGC 1 cut(s) 119
Sse9I AATT 3 cut(s) 131, 557, 668
SsiI CCGC 1 cut(s) 698
SspMI CTAG 2 cut(s) 143, 701
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 709
StyI CCWWGG 3 cut(s) 213, 620, 829
TaaI ACNGT 2 cut(s) 300, 811
TaqI TCGA 2 cut(s) 363, 691
TaqII GACCGA 1 cut(s) 490
TasI AATT 3 cut(s) 131, 557, 668
TatI WGTACW 1 cut(s) 154
TfiI GAWTC 2 cut(s) 199, 410
Tru1I TTAA 2 cut(s) 303, 315
Tru9I TTAA 2 cut(s) 303, 315
TscAI CASTG 2 cut(s) 97, 238
TseFI GTSAC 2 cut(s) 88, 229
TseI GCWGC 4 cut(s) 455, 533, 731, 761
Tsp45I GTSAC 2 cut(s) 88, 229
TspDTI ATGAA 4 cut(s) 212, 243, 616, 678
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 2 cut(s) 97, 238
XceI RCATGY 1 cut(s) 119
XspI CTAG 2 cut(s) 143, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.