pycom12g14220

Tropinone reductase homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
16817591 .. 16818086
496 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g14220.1

Sequence Viewer

Length: 384 bp
ATGGCAGGTTTCGACAGCTATAGGTGGTCACTAAAGGGTATGACTGCCCTCGTCACCGGTGGAACCAAAGGCATAGGATATGCCATAGTGGAAGAACTAGCCGGACTTGGAGCAACCGTGCATACCTGTGCTCGTAGCAAAACACAGATTCTTGAGAGGCTTCAACAATGGGAAAACAAGGGATTCAGGGTGACTGGCTCAGTTTGTGATCTCACCTCTAAAGCACAAAGAGAGAACCTCATCAAAACTGTCTCCTCTATTTTTGATGGAAAACTTAACATCCTTGTAGGTTCATTTATGACTAATACTACCTTAATTCGCAGCTTATTGATTAACATGAAGATGGGTTTTGACTTTGCTACAATTGGTGCAATATGTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

13.84

Weight (kDa)

9.55

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 96 1.1e-15 short chain dehydrogenase
KR PF08659 15 - 88 8.3e-07 KR domain
adh_short_C2 PF13561 23 - 98 2.9e-08 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 2 cut(s) 18, 324
AluI AGCT 2 cut(s) 18, 324
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 321
AsiGI ACCGGT 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 46, 202, 205
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 333
BccI CCATC 2 cut(s) 260, 337
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 1 cut(s) 322
BlsI GCNGC 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 222, 254
BpuEI CTTGAG 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 333
BshTI ACCGGT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 2 cut(s) 57, 102
BsmAI GTCTC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 56
BssMI GATC 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 118, 250
BstDEI CTNAG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 333
BtsCI GGATG 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 56
CspAI ACCGGT 1 cut(s) 56
CviAII CATG 1 cut(s) 337
CviJI RGCY 5 cut(s) 18, 101, 160, 198, 324
CviKI_1 RGCY 5 cut(s) 18, 101, 160, 198, 324
DdeI CTNAG 1 cut(s) 199
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
FaeI CATG 1 cut(s) 340
FaiI YATR 9 cut(s) 21, 41, 74, 81, 86, 123, 299, 338, 376
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 322
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 322
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 322
HapII CCGG 2 cut(s) 57, 102
Hin1II CATG 1 cut(s) 340
HinfI GANTC 2 cut(s) 148, 183
HpaII CCGG 2 cut(s) 57, 102
HphI GGTGA 3 cut(s) 46, 202, 205
Hpy188III TCNNGA 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 118, 250
HpyCH4V TGCA 2 cut(s) 121, 371
HpyF3I CTNAG 1 cut(s) 199
Hsp92II CATG 1 cut(s) 340
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 70, 115, 139, 172, 180
Lsp1109I GCAGC 1 cut(s) 333
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 3 cut(s) 27, 52, 190
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 2 cut(s) 104, 352
MfeI CAATTG 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 2 cut(s) 315, 363
MnlI CCTC 5 cut(s) 59, 150, 226, 248, 265
MseI TTAA 3 cut(s) 276, 314, 333
MslI CAYNNNNRTG 2 cut(s) 126, 341
MspI CCGG 2 cut(s) 57, 102
MunI CAATTG 1 cut(s) 363
NdeII GATC 1 cut(s) 208
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 3 cut(s) 27, 52, 190
PfeI GAWTC 2 cut(s) 148, 183
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 64
RseI CAYNNNNRTG 2 cut(s) 126, 341
SaqAI TTAA 3 cut(s) 276, 314, 333
SatI GCNGC 1 cut(s) 322
Sau3AI GATC 1 cut(s) 208
SduI GDGCHC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 19
SgrAI CRCCGGYG 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 126, 341
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 2 cut(s) 315, 363
SspMI CTAG 1 cut(s) 98
TaaI ACNGT 2 cut(s) 118, 250
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 315, 363
TfiI GAWTC 2 cut(s) 148, 183
Tru1I TTAA 3 cut(s) 276, 314, 333
Tru9I TTAA 3 cut(s) 276, 314, 333
TseFI GTSAC 3 cut(s) 27, 52, 190
TseI GCWGC 1 cut(s) 321
Tsp45I GTSAC 3 cut(s) 27, 52, 190
TspDTI ATGAA 2 cut(s) 282, 353
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.