FvH4_3g37000

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000208
Physical Location & Seq
Forward (+)
31725206 .. 31727050
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37000.t2

Sequence Viewer

Length: 675 bp
ATGGCTCAAAATGGCGGAGGCAGAAGATGGTCTCTTGAAGGAATGACTGCTCTTGTCACTGGTGGAACCAAAGGAATTGGGTATGCAATAGTAGAGGAATTGGCTGGACTAGGTGCAAGAGTACACACTTGTTCTCGAAATGAAGCCCAGCTCCATGAATGCTTGAGTCAATGGAAGAAGAAGGGTTTGCATCAAGTCACTGGTTCAGTCTGTGATGTGGTCTCAAAAATCCACAGAGAGGAGCTGATACATAGAGTCTCATCACTGTTTCATGGGAAACTCAACATCCTTCCTCTTCTGAAAGCTTCCAGTGCTGGTAACATTATTCTTCTGTCTTCTGTTGCTGGTGTGGTATCAATTGGCAAGGTTGGGAGTATATATGGGGCAACTAAAGGAGCAATGAACCAGCTGGCCAAAAACTTGGCTTGTGAGTGGGCAAAAGACAACATTAGGATCAACAGTGTTGCACCTTGGTTCATCAGAACTCCTCTGGTTGAACCTCTTTTGAGTGACGAAAAGTTTTCGGAGGCTGTCATCTCTCGAACCCCATTAGAGCGTATTGGAGAGCCTGAAGAGGTGTCTGCATTGGTGGCGTTTCTATGCCTCCCAGCAGCCTCATACATAACAGGGCAGACTATTTGCGTTGATGGAGGGATGACCATCAATGGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

225

Amino Acids

23.91

Weight (kDa)

8.54

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 16 - 212 2.2e-46 short chain dehydrogenase
KR PF08659 16 - 180 2e-09 KR domain
adh_short_C2 PF13561 24 - 260 7.5e-59 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 15
AclWI GGATC 1 cut(s) 461
AcoI YGGCCR 1 cut(s) 411
AcuI CTGAAG 1 cut(s) 591
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 2 cut(s) 38, 497
AluBI AGCT 4 cut(s) 151, 244, 305, 409
AluI AGCT 4 cut(s) 151, 244, 305, 409
Alw26I GTCTC 3 cut(s) 36, 226, 262
AlwI GGATC 1 cut(s) 461
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 1 cut(s) 611
BalI TGGCCA 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 623
BccI CCATC 3 cut(s) 21, 641, 668
BcoDI GTCTC 3 cut(s) 36, 226, 262
BfaI CTAG 2 cut(s) 110, 673
BisI GCNGC 1 cut(s) 612
BlsI GCNGC 1 cut(s) 613
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 659
BsaI GGTCTC 2 cut(s) 36, 226
BsaJI CCNNGG 1 cut(s) 470
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 3 cut(s) 64, 205, 309
Bse3DI GCAATG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 659
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 2 cut(s) 285, 660
BseJI GATNNNNATC 1 cut(s) 659
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 405
BseNI ACTGG 3 cut(s) 64, 205, 309
BseRI GAGGAG 2 cut(s) 254, 477
BseXI GCAGC 1 cut(s) 623
BseYI CCCAGC 2 cut(s) 147, 607
BshFI GGCC 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 3 cut(s) 36, 226, 262
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 1 cut(s) 413
Bso31I GGTCTC 2 cut(s) 36, 226
Bsp143I GATC 1 cut(s) 453
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 413
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 461
BspTNI GGTCTC 2 cut(s) 36, 226
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 3 cut(s) 64, 205, 309
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 1 cut(s) 453
BssT1I CCWWGG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 267, 461
Bst6I CTCTTC 2 cut(s) 300, 567
BstC8I GCNNGC 1 cut(s) 411
BstF5I GGATG 2 cut(s) 285, 660
BstKTI GATC 1 cut(s) 456
BstMAI GTCTC 3 cut(s) 36, 226, 262
BstMBI GATC 1 cut(s) 453
BstMWI GCNNNNNNNGC 2 cut(s) 311, 590
BstV1I GCAGC 1 cut(s) 623
BstV2I GAAGAC 1 cut(s) 327
BstXI CCANNNNNNTGG 1 cut(s) 421
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 2 cut(s) 285, 660
BtsIMutI CAGTG 5 cut(s) 57, 198, 263, 316, 466
Cac8I GCNNGC 1 cut(s) 411
Csp6I GTAC 1 cut(s) 122
CviAII CATG 2 cut(s) 155, 272
CviQI GTAC 1 cut(s) 122
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 300, 567
EarI CTCTTC 2 cut(s) 300, 567
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 470
Eco31I GGTCTC 2 cut(s) 36, 226
Eco57I CTGAAG 1 cut(s) 591
EcoT14I CCWWGG 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 2 cut(s) 158, 275
FatI CATG 2 cut(s) 154, 271
Fnu4HI GCNGC 1 cut(s) 612
FokI GGATG 2 cut(s) 272, 667
Fsp4HI GCNGC 1 cut(s) 612
FspBI CTAG 2 cut(s) 110, 673
GluI GCNGC 1 cut(s) 612
GsaI CCCAGC 2 cut(s) 151, 611
HaeIII GGCC 1 cut(s) 413
Hin1II CATG 2 cut(s) 158, 275
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 2 cut(s) 166, 255
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 300, 482, 526
Hpy188III TCNNGA 3 cut(s) 35, 135, 540
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 32, 175, 299
HpyCH4III ACNGT 2 cut(s) 267, 461
HpyCH4V TGCA 5 cut(s) 86, 116, 190, 467, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 590
Hsp92II CATG 2 cut(s) 158, 275
Kzo9I GATC 1 cut(s) 453
LmnI GCTCC 3 cut(s) 156, 241, 395
Lsp1109I GCAGC 1 cut(s) 623
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 110, 673
MaeIII GTNAC 4 cut(s) 55, 196, 317, 509
MalI GATC 1 cut(s) 455
MboI GATC 1 cut(s) 453
MboII GAAGA 7 cut(s) 36, 187, 190, 287, 320, 327, 584
MfeI CAATTG 1 cut(s) 357
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 3 cut(s) 75, 98, 357
MluNI TGGCCA 1 cut(s) 413
MlyI GAGTC 2 cut(s) 175, 264
Mox20I TGGCCA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 413
Msp20I TGGCCA 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 409
MunI CAATTG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 311, 590
NdeII GATC 1 cut(s) 453
NlaIII CATG 2 cut(s) 158, 275
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 3 cut(s) 55, 196, 509
PctI GAATGC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 613
PleI GAGTC 2 cut(s) 174, 263
PpsI GAGTC 2 cut(s) 174, 263
PspFI CCCAGC 2 cut(s) 147, 607
PspN4I GGNNCC 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 409
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SatI GCNGC 1 cut(s) 612
Sau3AI GATC 1 cut(s) 453
SchI GAGTC 2 cut(s) 175, 264
SetI ASST 9 cut(s) 115, 153, 246, 307, 369, 411, 472, 502, 579
SfaNI GCATC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 3 cut(s) 75, 98, 357
SsiI CCGC 1 cut(s) 15
SspMI CTAG 2 cut(s) 110, 673
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 2 cut(s) 267, 461
TaqI TCGA 2 cut(s) 136, 541
TasI AATT 3 cut(s) 75, 98, 357
TatI WGTACW 1 cut(s) 121
TscAI CASTG 5 cut(s) 64, 205, 270, 316, 466
TseFI GTSAC 3 cut(s) 55, 196, 509
TseI GCWGC 1 cut(s) 611
Tsp45I GTSAC 3 cut(s) 55, 196, 509
TspDTI ATGAA 5 cut(s) 156, 171, 260, 416, 466
TspRI CASTG 5 cut(s) 64, 205, 270, 316, 466
XspI CTAG 2 cut(s) 110, 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.