Rw5G022400

Tropinone reductase homolog At1g07440-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
30787691 .. 30788758
1068 bp
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UTR
Exon/CDS
Intron
Rw5G022400.1

Sequence Viewer

Length: 336 bp
ATGGCTCAATATGGCGGAGGAAGATGGTCTCTTGAAGGAATGACTGCTCTCGTCACTGGTGGAACCAAAGGGATTGGGTTTGCAATTGTTGAGGAATTGGCCGGATTAGGTGCAAGGGTACATACTTGTTCTCGGAATGAAACCCAGCTCAATGAATGCTTGAGTCAATGGAAGAAGAAGGGTTTTCATCAAGTCACTGGTTCAGTATGTGATGTGGTCTCAAAAATCAAGAGAGAGGAGCTAATACAGAAGGTCTCATCACTGTTTCATGGGAAACTTAATATCCTTGTAAGTATTTCAATCATCAATCTGTTGAAAGCAAATACAACCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.0

Weight (kDa)

9.37

Isoelectric Point (pI)

30.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 97 1.9e-14 short chain dehydrogenase
adh_short_C2 PF13561 23 - 98 1e-07 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 1 cut(s) 120
AgsI TTSAA 3 cut(s) 35, 300, 316
AluBI AGCT 2 cut(s) 148, 241
AluI AGCT 2 cut(s) 148, 241
Alw26I GTCTC 3 cut(s) 33, 223, 259
AoxI GGCC 1 cut(s) 99
BccI CCATC 1 cut(s) 18
BcoDI GTCTC 3 cut(s) 33, 223, 259
BmiI GGNNCC 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 181
BsaI GGTCTC 3 cut(s) 33, 223, 259
Bse1I ACTGG 2 cut(s) 61, 202
BseNI ACTGG 2 cut(s) 61, 202
BseRI GAGGAG 1 cut(s) 251
BseYI CCCAGC 1 cut(s) 144
BshFI GGCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 102
BsmAI GTCTC 3 cut(s) 33, 223, 259
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 3 cut(s) 33, 223, 259
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 64
BspTNI GGTCTC 3 cut(s) 33, 223, 259
BsrI ACTGG 2 cut(s) 61, 202
Bst4CI ACNGT 1 cut(s) 264
BstMAI GTCTC 3 cut(s) 33, 223, 259
BsuRI GGCC 1 cut(s) 101
BtsIMutI CAGTG 3 cut(s) 54, 195, 260
Csp6I GTAC 1 cut(s) 119
CviAII CATG 1 cut(s) 269
CviJI RGCY 4 cut(s) 5, 101, 148, 241
CviKI_1 RGCY 4 cut(s) 5, 101, 148, 241
CviQI GTAC 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 99
EciI GGCGGA 1 cut(s) 30
Eco31I GGTCTC 3 cut(s) 33, 223, 259
FaeI CATG 1 cut(s) 272
FaiI YATR 5 cut(s) 12, 123, 208, 270, 334
FatI CATG 1 cut(s) 268
GsaI CCCAGC 1 cut(s) 148
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 102
Hin1II CATG 1 cut(s) 272
HinfI GANTC 1 cut(s) 163
HpaII CCGG 1 cut(s) 102
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 32, 229
HpyAV CCTTC 3 cut(s) 29, 172, 244
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 83, 113
Hsp92II CATG 1 cut(s) 272
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 4 cut(s) 42, 115, 158, 183
MaeIII GTNAC 2 cut(s) 52, 193
MboII GAAGA 3 cut(s) 33, 184, 187
MfeI CAATTG 1 cut(s) 84
MluCI AATT 2 cut(s) 84, 95
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 3 cut(s) 11, 85, 229
MseI TTAA 1 cut(s) 279
MspI CCGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 161
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 52, 193
PctI GAATGC 1 cut(s) 161
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 64
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 279
SchI GAGTC 1 cut(s) 172
SetI ASST 4 cut(s) 112, 150, 243, 255
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 2 cut(s) 84, 95
SsiI CCGC 1 cut(s) 15
TaaI ACNGT 1 cut(s) 264
TasI AATT 2 cut(s) 84, 95
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 3 cut(s) 61, 202, 267
TseFI GTSAC 2 cut(s) 52, 193
Tsp45I GTSAC 2 cut(s) 52, 193
TspDTI ATGAA 4 cut(s) 153, 168, 176, 257
TspRI CASTG 3 cut(s) 61, 202, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.