AT2G29340

tropinone reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000208
Physical Location & Seq
Forward (+)
12597018 .. 12599299
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29340.2

Sequence Viewer

Length: 924 bp
ATGGACAAAAGATGGAGTCTCAAAGGTATGACTGCTCTTGTGACCGGTGGAGCCAGTGGAATCGGTTATGCCATAGTAGAAGAGTTGGCTGGTTTTGGAGCTAGAATCCATGTATGTGACATCTCTGAAGCTAAGCTCAATCAAAGTTTAAGCGAATGGGAAAAGAAAGGTTTTCAAGTAAGTGGCTCAGTTTGTGATGTAGCCTCTCGTCCCGAGAGAGAAGAACTGATGCAAACCGTCTCCTCGCAGTTCGATGGCAAACTCAACATTCTTGTAAGCAATGTGGGCGTAATCCGCTCAAAGCCAACAACAGAATATACCGAAGACGATTTCGCTTTTCATATATCATCAAACGTGGAAGCTGCTTACCATTTTAGCCAGCTTTCACATCCTCTCCTAAAGGCTTCAGGCTATGGAAGCATCATCTTTGTTTCCTCTATTGCAGGGGTTATATCTTTTGACGCTGGATCCATTTATGGTCTAACAAAAGGAGCTTTGATTCAGCTAGCTAAAAATTTGGCATGTGAATGGGCAAAAGACGGCATAAGAGCCAACGCTGTTGCGCCTAATGTCATCAATACTCCTCTGTCTCAATCTTATCTTGAGGACGTCAGTTTCAAGAAGGCATTGTTGAGTAGGACTCCACTTGGTCGTGTTGGAGAGCCAAATGAAGTTGCATCACTAGTGGCCTTCTTGTGTCTACCTGCAGCTTCTTATATTACTGGTCAGACTATTTGTGTTGATGGAGGTCTCACCGTTAATGGCTTCTCCTATCAGCCAGAGGAGGCATTGTTGAGTAGAACTTCACTTCGTCGCGTTGGAGAGCCGAATGAAGTTTCATCACTAGTGGTCTTCTTGTGTCTCCCTGCAGCTTCATATATTACTGGTCAAATGGTCAAACCATTTGTATTGATGGAGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

307

Amino Acids

32.9

Weight (kDa)

5.49

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 11 - 202 4e-47 short chain dehydrogenase
KR PF08659 11 - 169 4.3e-13 KR domain
adh_short_C2 PF13561 18 - 252 1e-59 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 612
Acc36I ACCTGC 1 cut(s) 712
AccBSI CCGCTC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 700
AccII CGCG 1 cut(s) 816
AciI CCGC 1 cut(s) 295
AclWI GGATC 2 cut(s) 462, 475
AcsI RAATTY 1 cut(s) 514
AcuI CTGAAG 2 cut(s) 147, 390
AcyI GRCGYC 1 cut(s) 609
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 2 cut(s) 176, 619
AhlI ACTAGT 2 cut(s) 682, 844
Alw26I GTCTC 5 cut(s) 23, 244, 594, 755, 866
AlwI GGATC 2 cut(s) 462, 475
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 1 cut(s) 687
ApeKI GCWGC 3 cut(s) 362, 707, 869
ApoI RAATTY 1 cut(s) 514
AsiGI ACCGGT 1 cut(s) 44
AspLEI GCGC 1 cut(s) 565
AsuHPI GGTGA 1 cut(s) 745
AsuNHI GCTAGC 1 cut(s) 505
AvaI CYCGRG 1 cut(s) 212
BamHI GGATCC 1 cut(s) 467
BbsI GAAGAC 2 cut(s) 330, 844
BbvI GCAGC 3 cut(s) 349, 719, 881
BccI CCATC 4 cut(s) 6, 248, 737, 907
BceAI ACGGC 1 cut(s) 556
BcoDI GTCTC 5 cut(s) 23, 244, 594, 755, 866
BcuI ACTAGT 2 cut(s) 682, 844
BfaI CTAG 4 cut(s) 102, 506, 683, 845
BfmI CTRYAG 2 cut(s) 705, 867
BfuAI ACCTGC 1 cut(s) 712
BisI GCNGC 3 cut(s) 363, 708, 870
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 3 cut(s) 364, 709, 871
BmeT110I CYCGRG 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 52, 469
BmsI GCATC 3 cut(s) 219, 429, 686
BmtI GCTAGC 1 cut(s) 509
BpiI GAAGAC 2 cut(s) 330, 844
BplI GAGNNNNNCTC 2 cut(s) 625, 657
Bpu1102I GCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 623
BsaHI GRCGYC 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 755
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 4 cut(s) 378, 408, 776, 806
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 3 cut(s) 54, 727, 889
Bse3DI GCAATG 1 cut(s) 286
BseGI GGATG 1 cut(s) 388
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 3 cut(s) 54, 727, 889
BseRI GAGGAG 3 cut(s) 232, 573, 797
BseXI GCAGC 3 cut(s) 349, 719, 881
Bsh1236I CGCG 1 cut(s) 816
BshFI GGCC 1 cut(s) 689
BshTI ACCGGT 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 195
BsmAI GTCTC 5 cut(s) 23, 244, 594, 755, 866
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 1 cut(s) 689
Bso31I GGTCTC 1 cut(s) 755
BsoBI CYCGRG 1 cut(s) 212
Bsp143I GATC 1 cut(s) 467
Bsp1720I GCTNAGC 1 cut(s) 132
BspACI CCGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 689
BspCNI CTCAG 1 cut(s) 200
BspFNI CGCG 1 cut(s) 816
BspLI GGNNCC 2 cut(s) 52, 469
BspMAI CTGCAG 2 cut(s) 709, 871
BspMI ACCTGC 1 cut(s) 712
BspOI GCTAGC 1 cut(s) 509
BspPI GGATC 2 cut(s) 462, 475
BspTNI GGTCTC 1 cut(s) 755
BsrBI CCGCTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 3 cut(s) 54, 727, 889
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 1 cut(s) 467
BssNI GRCGYC 1 cut(s) 609
Bst4CI ACNGT 2 cut(s) 238, 757
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 609
BstC8I GCNNGC 2 cut(s) 380, 507
BstDEI CTNAG 2 cut(s) 132, 187
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 816
BstHHI GCGC 1 cut(s) 565
BstKTI GATC 1 cut(s) 470
BstMAI GTCTC 5 cut(s) 23, 244, 594, 755, 866
BstMBI GATC 1 cut(s) 467
BstMWI GCNNNNNNNGC 3 cut(s) 285, 294, 417
BstNSI RCATGY 1 cut(s) 525
BstSFI CTRYAG 2 cut(s) 705, 867
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 3 cut(s) 349, 719, 881
BstV2I GAAGAC 2 cut(s) 330, 844
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 1 cut(s) 689
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 2 cut(s) 380, 507
CfoI GCGC 1 cut(s) 565
Cfr10I RCCGGY 1 cut(s) 44
CseI GACGC 1 cut(s) 470
CspAI ACCGGT 1 cut(s) 44
CviAII CATG 2 cut(s) 110, 522
DdeI CTNAG 2 cut(s) 132, 187
DpnI GATC 1 cut(s) 469
DpnII GATC 1 cut(s) 467
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 755
Eco57I CTGAAG 2 cut(s) 147, 390
Eco88I CYCGRG 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 2 cut(s) 113, 525
FaqI GGGAC 1 cut(s) 195
FatI CATG 2 cut(s) 109, 521
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 3 cut(s) 363, 708, 870
FokI GGATG 1 cut(s) 375
Fsp4HI GCNGC 3 cut(s) 363, 708, 870
FspBI CTAG 4 cut(s) 102, 506, 683, 845
GlaI GCGC 1 cut(s) 564
GluI GCNGC 3 cut(s) 363, 708, 870
HaeIII GGCC 1 cut(s) 689
HapII CCGG 1 cut(s) 45
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 565
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 2 cut(s) 113, 525
Hin6I GCGC 1 cut(s) 563
HinP1I GCGC 1 cut(s) 563
HinfI GANTC 5 cut(s) 16, 60, 105, 499, 640
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 745
Hpy166II GTNNAC 1 cut(s) 701
Hpy188I TCNGA 2 cut(s) 127, 729
Hpy188III TCNNGA 3 cut(s) 212, 602, 619
Hpy8I GTNNAC 1 cut(s) 701
Hpy99I CGWCG 1 cut(s) 816
HpyAV CCTTC 2 cut(s) 616, 700
HpyCH4III ACNGT 2 cut(s) 238, 757
HpyCH4IV ACGT 2 cut(s) 354, 609
HpyCH4V TGCA 5 cut(s) 232, 443, 677, 707, 869
HpyF10VI GCNNNNNNNGC 3 cut(s) 285, 294, 417
HpyF3I CTNAG 2 cut(s) 132, 187
HpySE526I ACGT 2 cut(s) 354, 609
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 2 cut(s) 113, 525
HspAI GCGC 1 cut(s) 563
Kzo9I GATC 1 cut(s) 467
LmnI GCTCC 3 cut(s) 50, 98, 491
Lsp1109I GCAGC 3 cut(s) 349, 719, 881
LweI GCATC 3 cut(s) 219, 429, 686
MaeI CTAG 4 cut(s) 102, 506, 683, 845
MaeII ACGT 2 cut(s) 354, 609
MaeIII GTNAC 2 cut(s) 40, 116
MalI GATC 1 cut(s) 469
MbiI CCGCTC 1 cut(s) 297
MboI GATC 1 cut(s) 467
MboII GAAGA 4 cut(s) 92, 233, 335, 844
MflI RGATCY 1 cut(s) 467
MluCI AATT 1 cut(s) 514
MlyI GAGTC 2 cut(s) 25, 634
MmeI TCCRAC 2 cut(s) 637, 799
MseI TTAA 2 cut(s) 149, 759
MslI CAYNNNNRTG 2 cut(s) 114, 526
MspI CCGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 3 cut(s) 285, 294, 417
NdeII GATC 1 cut(s) 467
NheI GCTAGC 1 cut(s) 505
NlaIII CATG 2 cut(s) 113, 525
NlaIV GGNNCC 2 cut(s) 52, 469
NmuCI GTSAC 2 cut(s) 40, 116
NspI RCATGY 1 cut(s) 525
PfeI GAWTC 3 cut(s) 60, 105, 499
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 3 cut(s) 364, 709, 871
PleI GAGTC 2 cut(s) 24, 634
PpsI GAGTC 2 cut(s) 24, 634
PspN4I GGNNCC 2 cut(s) 52, 469
PstI CTGCAG 2 cut(s) 709, 871
PsuI RGATCY 1 cut(s) 467
RseI CAYNNNNRTG 2 cut(s) 114, 526
SaqAI TTAA 2 cut(s) 149, 759
SatI GCNGC 3 cut(s) 363, 708, 870
Sau3AI GATC 1 cut(s) 467
SchI GAGTC 2 cut(s) 25, 634
SfaNI GCATC 3 cut(s) 219, 429, 686
SfcI CTRYAG 2 cut(s) 705, 867
SmiMI CAYNNNNRTG 2 cut(s) 114, 526
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
SpeI ACTAGT 2 cut(s) 682, 844
Sse9I AATT 1 cut(s) 514
SsiI CCGC 1 cut(s) 295
SspMI CTAG 4 cut(s) 102, 506, 683, 845
TaaI ACNGT 2 cut(s) 238, 757
TaiI ACGT 2 cut(s) 357, 612
TaqI TCGA 1 cut(s) 252
TasI AATT 1 cut(s) 514
TfiI GAWTC 3 cut(s) 60, 105, 499
Tru1I TTAA 2 cut(s) 149, 759
Tru9I TTAA 2 cut(s) 149, 759
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 2 cut(s) 40, 116
TseI GCWGC 3 cut(s) 362, 707, 869
Tsp45I GTSAC 2 cut(s) 40, 116
TspDTI ATGAA 5 cut(s) 329, 684, 828, 846, 864
TspRI CASTG 1 cut(s) 61
XapI RAATTY 1 cut(s) 514
XceI RCATGY 1 cut(s) 525
XmiI GTMKAC 1 cut(s) 700
XspI CTAG 4 cut(s) 102, 506, 683, 845
ZraI GACGTC 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.