pycom11g07990

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000208
Physical Location & Seq
Reverse (-)
6124798 .. 6128039
3242 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07990.5

Sequence Viewer

Length: 795 bp
ATGAGCAGCAGAGACAGAAGATGGTCTCTTGACGGAATGACGGCTCTTGTCACTGGTGGAACCAAAGGAATTGGGTATGCAATAGTGGAAGAATTGGCAGGGCTAGGTGCAATTGTGCATACTTGTTCGCGAAATGAAGTTGACCTTAATGACTGCCTGAGTCAATGGGACGAGAAGGGTTTTCAAGTCACTGGCTCAGTCTGTGATGTGGTGTCAAAGACCCAAAGAGAGGAGCTTATAAACAAGGTCTCATCACTCTTTGATGGCAAACTTAACATCCTTATAAACAATGTGGGGGCTAACAGACCAAAAGCAACACTAGATTACACAACTGAAGATTACTCATTCATGATGAGCATCAATCTTGAATCTGCTTACCATTTGTGCCAACTTTCACATCCTCTTCTCAAAGCTTCTGGATCTGCTAACATCGTTTTTTTATCCTCCGTTGCTGGTGTGGTCTCACTAGAGGTTGGATCTATATATTCTGCAACTAAAGCTGCAATAAATCAATTAGCAAAAAACTTGGCATGTGAGTGGGCAAAAGATAAAATAAGGACCAACAGTGTTGCACCTTGGTTCATCACCACTCCCCTCGGTGAAATGTTTCTCGGAAATAAAAAGAAATCGGAGGTGATAAACTCTCGGTGCCCTTTAGGACGTCCAGGAGAGCCAAAAGAAGTGTCTTCCTTGGTAGCATTTCTATGCCTACCTGCAGCCTCTTACATTACTGGGCAAACTATTACCGTCGATGGTGGGGTGACTGTCAATGGCTTGCTCTTCCAAGAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

265

Amino Acids

28.43

Weight (kDa)

5.97

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 239, 284
AatII GACGTC 1 cut(s) 664
Acc36I ACCTGC 1 cut(s) 721
AccB1I GGYRCC 1 cut(s) 648
AccII CGCG 1 cut(s) 130
AclWI GGATC 2 cut(s) 427, 484
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 661
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 185, 368
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 3 cut(s) 235, 413, 500
AluI AGCT 3 cut(s) 235, 413, 500
Alw26I GTCTC 4 cut(s) 6, 30, 253, 466
AlwI GGATC 2 cut(s) 427, 484
ApeKI GCWGC 3 cut(s) 6, 500, 716
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
Asp700I GAANNNNTTC 1 cut(s) 606
AspS9I GGNCC 1 cut(s) 558
AsuHPI GGTGA 4 cut(s) 577, 611, 646, 772
AvaII GGWCC 1 cut(s) 558
BaeGI GKGCMC 1 cut(s) 653
BanI GGYRCC 1 cut(s) 648
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 3 cut(s) 18, 487, 728
BccI CCATC 3 cut(s) 15, 257, 746
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 666
BcoDI GTCTC 4 cut(s) 6, 30, 253, 466
BfaI CTAG 3 cut(s) 104, 320, 467
BfmI CTRYAG 1 cut(s) 714
BfuAI ACCTGC 1 cut(s) 721
BisI GCNGC 3 cut(s) 7, 501, 717
BlsI GCNGC 3 cut(s) 8, 502, 718
Bme1390I CCNGG 1 cut(s) 666
Bme18I GGWCC 1 cut(s) 558
BmgT120I GGNCC 1 cut(s) 558
BmiI GGNNCC 2 cut(s) 61, 650
BmrFI CCNGG 1 cut(s) 666
BmrI ACTGGG 1 cut(s) 741
BmsI GCATC 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 741
BpiI GAAGAC 1 cut(s) 678
BsaBI GATNNNNATC 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 661
BsaI GGTCTC 3 cut(s) 30, 253, 466
BsaJI CCNNGG 3 cut(s) 575, 595, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 3 cut(s) 58, 196, 736
Bse8I GATNNNNATC 1 cut(s) 356
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 3 cut(s) 575, 595, 690
BseGI GGATG 2 cut(s) 276, 397
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 149, 210
BseNI ACTGG 3 cut(s) 58, 196, 736
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 3 cut(s) 18, 487, 728
Bsh1236I CGCG 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 648
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 4 cut(s) 6, 30, 253, 466
BsmFI GGGAC 1 cut(s) 182
Bso31I GGTCTC 3 cut(s) 30, 253, 466
Bsp1286I GDGCHC 1 cut(s) 653
Bsp143I GATC 2 cut(s) 419, 476
Bsp68I TCGCGA 1 cut(s) 130
BspCNI CTCAG 2 cut(s) 150, 209
BspFNI CGCG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 61, 650
BspMAI CTGCAG 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 721
BspPI GGATC 2 cut(s) 427, 484
BspQI GCTCTTC 1 cut(s) 785
BspT107I GGYRCC 1 cut(s) 648
BspTNI GGTCTC 3 cut(s) 30, 253, 466
BsrI ACTGG 3 cut(s) 58, 196, 736
BssECI CCNNGG 3 cut(s) 575, 595, 690
BssMI GATC 2 cut(s) 419, 476
BssNI GRCGYC 1 cut(s) 661
BssT1I CCWWGG 2 cut(s) 575, 690
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 3 cut(s) 566, 748, 766
Bst6I CTCTTC 2 cut(s) 408, 785
BstACI GRCGYC 1 cut(s) 661
BstC8I GCNNGC 1 cut(s) 776
BstDEI CTNAG 2 cut(s) 158, 196
BstF5I GGATG 2 cut(s) 276, 397
BstFNI CGCG 1 cut(s) 130
BstKTI GATC 2 cut(s) 422, 479
BstMAI GTCTC 4 cut(s) 6, 30, 253, 466
BstMBI GATC 2 cut(s) 419, 476
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 1 cut(s) 714
BstSLI GKGCMC 1 cut(s) 653
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 3 cut(s) 18, 487, 728
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 2 cut(s) 419, 476
BstYI RGATCY 2 cut(s) 419, 476
BtsCI GGATG 2 cut(s) 276, 397
BtsIMutI CAGTG 3 cut(s) 51, 189, 571
BtuMI TCGCGA 1 cut(s) 130
BveI ACCTGC 1 cut(s) 721
Cac8I GCNNGC 1 cut(s) 776
CciI TCATGA 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 558
CviAII CATG 3 cut(s) 349, 531, 792
DdeI CTNAG 2 cut(s) 158, 196
DpnI GATC 2 cut(s) 421, 478
DpnII GATC 2 cut(s) 419, 476
Eam1104I CTCTTC 2 cut(s) 408, 785
EarI CTCTTC 2 cut(s) 408, 785
Eco130I CCWWGG 2 cut(s) 575, 690
Eco31I GGTCTC 3 cut(s) 30, 253, 466
Eco47I GGWCC 1 cut(s) 558
Eco57I CTGAAG 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 2 cut(s) 575, 690
ErhI CCWWGG 2 cut(s) 575, 690
FaeI CATG 3 cut(s) 352, 534, 795
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 182
FatI CATG 3 cut(s) 348, 530, 791
Fnu4HI GCNGC 3 cut(s) 7, 501, 717
FokI GGATG 2 cut(s) 263, 384
Fsp4HI GCNGC 3 cut(s) 7, 501, 717
FspBI CTAG 3 cut(s) 104, 320, 467
GluI GCNGC 3 cut(s) 7, 501, 717
Hin1I GRCGYC 1 cut(s) 661
Hin1II CATG 3 cut(s) 352, 534, 795
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 2 cut(s) 160, 368
HphI GGTGA 4 cut(s) 577, 611, 646, 772
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 614, 631
Hpy188III TCNNGA 5 cut(s) 29, 129, 349, 365, 417
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 752
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 3 cut(s) 566, 748, 766
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 7 cut(s) 80, 110, 118, 491, 503, 572, 716
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 2 cut(s) 158, 196
HpySE526I ACGT 1 cut(s) 661
Hsp92I GRCGYC 1 cut(s) 661
Hsp92II CATG 3 cut(s) 352, 534, 795
Kzo9I GATC 2 cut(s) 419, 476
LguI GCTCTTC 1 cut(s) 785
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 3 cut(s) 18, 487, 728
LweI GCATC 1 cut(s) 366
MaeI CTAG 3 cut(s) 104, 320, 467
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 3 cut(s) 49, 187, 760
MalI GATC 2 cut(s) 421, 478
MboI GATC 2 cut(s) 419, 476
MboII GAAGA 6 cut(s) 30, 101, 347, 395, 678, 772
MfeI CAATTG 1 cut(s) 111
MflI RGATCY 2 cut(s) 419, 476
MhlI GDGCHC 1 cut(s) 653
MluCI AATT 4 cut(s) 69, 92, 111, 512
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 7 cut(s) 223, 411, 454, 463, 605, 625, 730
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 2 cut(s) 147, 273
MslI CAYNNNNRTG 2 cut(s) 535, 703
MspR9I CCNGG 1 cut(s) 666
MunI CAATTG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 666
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeII GATC 2 cut(s) 419, 476
NlaIII CATG 3 cut(s) 352, 534, 795
NlaIV GGNNCC 2 cut(s) 61, 650
NmuCI GTSAC 3 cut(s) 49, 187, 760
NruI TCGCGA 1 cut(s) 130
NspI RCATGY 1 cut(s) 534
PagI TCATGA 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 785
PdmI GAANNNNTTC 1 cut(s) 606
PfeI GAWTC 1 cut(s) 368
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 3 cut(s) 8, 502, 718
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PsiI TTATAA 2 cut(s) 239, 284
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 2 cut(s) 61, 650
PspPI GGNCC 1 cut(s) 558
PstI CTGCAG 1 cut(s) 718
PsuI RGATCY 2 cut(s) 419, 476
RruI TCGCGA 1 cut(s) 130
RseI CAYNNNNRTG 2 cut(s) 535, 703
SapI GCTCTTC 1 cut(s) 785
SaqAI TTAA 2 cut(s) 147, 273
SatI GCNGC 3 cut(s) 7, 501, 717
Sau3AI GATC 2 cut(s) 419, 476
Sau96I GGNCC 1 cut(s) 558
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 1 cut(s) 653
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 714
SinI GGWCC 1 cut(s) 558
SmiMI CAYNNNNRTG 2 cut(s) 535, 703
Sse9I AATT 4 cut(s) 69, 92, 111, 512
SspMI CTAG 3 cut(s) 104, 320, 467
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 2 cut(s) 575, 690
TaaI ACNGT 3 cut(s) 566, 748, 766
TaiI ACGT 1 cut(s) 664
TaqI TCGA 1 cut(s) 750
TasI AATT 4 cut(s) 69, 92, 111, 512
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 2 cut(s) 147, 273
Tru9I TTAA 2 cut(s) 147, 273
TscAI CASTG 3 cut(s) 58, 196, 571
TseFI GTSAC 3 cut(s) 49, 187, 760
TseI GCWGC 3 cut(s) 6, 500, 716
Tsp45I GTSAC 3 cut(s) 49, 187, 760
TspDTI ATGAA 3 cut(s) 150, 337, 571
TspGWI ACGGA 2 cut(s) 48, 436
TspRI CASTG 3 cut(s) 58, 196, 571
VpaK11BI GGWCC 1 cut(s) 558
XceI RCATGY 1 cut(s) 534
XmnI GAANNNNTTC 1 cut(s) 606
XspI CTAG 3 cut(s) 104, 320, 467
ZraI GACGTC 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.