RchiOBHm_Chr4g0408721

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000208
Physical Location & Seq
Reverse (-)
31517459 .. 31519118
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37980

Sequence Viewer

Length: 948 bp
ATGTATCTTCAAATTTTGGCCATCAAGATAGAAAAGATAGAAACAGAGAGGGCTAGGCAAATGGCTCAAGCAAATAATCCTATTAGCAATGACAGCTCAGATAGAAGATGGTCTCTCGAGGGAATGACCGCTCTTGTCACGGGTGGAACCAAAGGCATCGGGTTAGAAATTAACCAAAGTCATCGATATTCAAATGTTTTACTACCTCATCTCATTGTTAGATATGCTATTGTGGAGGAATTGGCGAGGCTAGGTGCAAAGGTCCATACTTGTGCTCGGAATGAAGTCCAACTCAATGAGAGCTTGAGTCAATGGAAGGCCAAGGGTTTTCATCAAGTCACTGGTTCTGTATGTGATTTGATCTCAAAGCCCCAACGAGAAGAGCTCATAAACAAGGTCTCATCACTGTTTAATGGAAAACTAAACATCCTTATAAACAACGTGGGAACCAATATAGTAAAGCCCACAACTGATTACACAGCTGAAGATTATTCATTTCTCATGGGAACCAATCTTGAATCTTATTACAATATGTGCCAACTTGCACATCCTCTCCTCAAAGCTTCAGGAGCTGGTAATATTGTTCTGATATCTTCTATTGCTGGTGTGATATCAATTGGGGGTAGTGGAAGTGTCTATGCTGCCACTAAAGGAGCAATTAACCAATTGGCAAGATACTTGGCTTGCGAGTGGGCAAAAGACAAGATTAGGATCAACAGTATTGCACCTGGGTGCATACGAACTCCCTTATCTGAAGATGTTCTCAATAACCAAACGATGCTTGAGGCTATTAACTCTGGAACACCTTTAGGACGCCCTGGCGAGCCGGAAGAGGTTTCTTCCTTGGTGGCATTTCTATGCTTGCCTGCTGCCTCATACATAACTGGGCAGACTATTTGCATTGATGGAGGGATGACTGTTGATGGCATGCCAAGGCTAGGACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

315

Amino Acids

34.08

Weight (kDa)

6.95

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 75 - 306 3.9e-56 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 76 - 255 6.3e-40 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AccBSI CCGCTC 1 cut(s) 131
AciI CCGC 1 cut(s) 129
AclWI GGATC 1 cut(s) 719
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 3 cut(s) 504, 549, 774
AcyI GRCGYC 1 cut(s) 814
AfiI CCNNNNNNNGG 1 cut(s) 938
AgsI TTSAA 3 cut(s) 11, 192, 518
AjnI CCWGG 2 cut(s) 727, 817
AleI CACNNNNGTG 1 cut(s) 730
AluBI AGCT 6 cut(s) 96, 303, 385, 482, 563, 572
AluI AGCT 6 cut(s) 96, 303, 385, 482, 563, 572
Alw21I GWGCWC 2 cut(s) 277, 387
Alw26I GTCTC 2 cut(s) 117, 403
AlwI GGATC 1 cut(s) 719
AlwNI CAGNNNCTG 1 cut(s) 572
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 2 cut(s) 18, 318
ApeKI GCWGC 2 cut(s) 641, 869
ApoI RAATTY 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 759
AspS9I GGNCC 2 cut(s) 262, 941
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 2 cut(s) 262, 941
BalI TGGCCA 1 cut(s) 20
BanII GRGCYC 1 cut(s) 387
Bbv12I GWGCWC 2 cut(s) 277, 387
BbvI GCAGC 2 cut(s) 628, 856
BccI CCATC 4 cut(s) 29, 102, 899, 917
BciT130I CCWGG 2 cut(s) 729, 819
BcoDI GTCTC 2 cut(s) 117, 403
BfaI CTAG 3 cut(s) 54, 251, 938
BisI GCNGC 2 cut(s) 642, 870
BlsI GCNGC 2 cut(s) 643, 871
Bme1390I CCNGG 2 cut(s) 729, 819
Bme18I GGWCC 2 cut(s) 262, 941
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 262, 941
BmiI GGNNCC 3 cut(s) 148, 448, 508
BmrFI CCNGG 2 cut(s) 729, 819
BmrI ACTGGG 1 cut(s) 894
BmsI GCATC 2 cut(s) 165, 768
BmuI ACTGGG 1 cut(s) 894
BplI GAGNNNNNCTC 2 cut(s) 369, 401
BpuEI CTTGAG 3 cut(s) 51, 325, 803
Bsa29I ATCGAT 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 710
BsaHI GRCGYC 1 cut(s) 814
BsaI GGTCTC 2 cut(s) 117, 403
BsaJI CCNNGG 5 cut(s) 321, 728, 817, 843, 932
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 1 cut(s) 938
Bse1I ACTGG 2 cut(s) 346, 889
Bse3DI GCAATG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 710
BseBI CCWGG 2 cut(s) 729, 819
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 5 cut(s) 321, 728, 817, 843, 932
BseGI GGATG 3 cut(s) 426, 547, 918
BseJI GATNNNNATC 1 cut(s) 710
BseLI CCNNNNNNNGG 1 cut(s) 938
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 346, 889
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 2 cut(s) 628, 856
BshFI GGCC 2 cut(s) 20, 320
BshVI ATCGAT 1 cut(s) 184
BsiHKAI GWGCWC 2 cut(s) 277, 387
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 827
BslI CCNNNNNNNGG 1 cut(s) 938
BsmAI GTCTC 2 cut(s) 117, 403
BsnI GGCC 2 cut(s) 20, 320
Bso31I GGTCTC 2 cut(s) 117, 403
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 277, 387
Bsp143I GATC 2 cut(s) 360, 711
BspACI CCGC 1 cut(s) 129
BspANI GGCC 2 cut(s) 20, 320
BspCNI CTCAG 1 cut(s) 110
BspDI ATCGAT 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 148, 448, 508
BspPI GGATC 1 cut(s) 719
BspQI GCTCTTC 1 cut(s) 375
BspTNI GGTCTC 2 cut(s) 117, 403
BsrBI CCGCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 2 cut(s) 346, 889
BssECI CCNNGG 5 cut(s) 321, 728, 817, 843, 932
BssMI GATC 2 cut(s) 360, 711
BssNI GRCGYC 1 cut(s) 814
BssT1I CCWWGG 3 cut(s) 321, 843, 932
Bst2UI CCWGG 2 cut(s) 729, 819
Bst4CI ACNGT 3 cut(s) 408, 719, 919
Bst6I CTCTTC 2 cut(s) 375, 825
BstACI GRCGYC 1 cut(s) 814
BstC8I GCNNGC 5 cut(s) 685, 824, 863, 867, 929
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 3 cut(s) 426, 547, 918
BstKTI GATC 2 cut(s) 363, 714
BstMAI GTCTC 2 cut(s) 117, 403
BstMBI GATC 2 cut(s) 360, 711
BstMWI GCNNNNNNNGC 2 cut(s) 93, 569
BstNI CCWGG 2 cut(s) 729, 819
BstNSI RCATGY 1 cut(s) 931
BstSCI CCNGG 2 cut(s) 727, 817
BstV1I GCAGC 2 cut(s) 628, 856
Bsu15I ATCGAT 1 cut(s) 184
BsuRI GGCC 2 cut(s) 20, 320
BsuTUI ATCGAT 1 cut(s) 184
BtsCI GGATG 3 cut(s) 426, 547, 918
BtsIMutI CAGTG 2 cut(s) 339, 404
Cac8I GCNNGC 5 cut(s) 685, 824, 863, 867, 929
CaiI CAGNNNCTG 1 cut(s) 572
Cfr13I GGNCC 2 cut(s) 262, 941
ClaI ATCGAT 1 cut(s) 184
CseI GACGC 1 cut(s) 822
CviAII CATG 2 cut(s) 502, 928
DdeI CTNAG 1 cut(s) 97
DpnI GATC 2 cut(s) 362, 713
DpnII GATC 2 cut(s) 360, 711
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 375, 825
EarI CTCTTC 2 cut(s) 375, 825
Ecl136II GAGCTC 1 cut(s) 385
Eco130I CCWWGG 3 cut(s) 321, 843, 932
Eco24I GRGCYC 1 cut(s) 387
Eco31I GGTCTC 2 cut(s) 117, 403
Eco32I GATATC 2 cut(s) 591, 612
Eco47I GGWCC 2 cut(s) 262, 941
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 3 cut(s) 504, 549, 774
Eco88I CYCGRG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 941
EcoRII CCWGG 2 cut(s) 727, 817
EcoRV GATATC 2 cut(s) 591, 612
EcoT14I CCWWGG 3 cut(s) 321, 843, 932
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 3 cut(s) 321, 843, 932
FaeI CATG 2 cut(s) 505, 931
FatI CATG 2 cut(s) 501, 927
Fnu4HI GCNGC 2 cut(s) 642, 870
FokI GGATG 3 cut(s) 413, 534, 925
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 2 cut(s) 642, 870
FspBI CTAG 3 cut(s) 54, 251, 938
GluI GCNGC 2 cut(s) 642, 870
HaeIII GGCC 2 cut(s) 20, 320
HapII CCGG 1 cut(s) 827
HgaI GACGC 1 cut(s) 822
Hin1I GRCGYC 1 cut(s) 814
Hin1II CATG 2 cut(s) 505, 931
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 2 cut(s) 307, 518
HpaII CCGG 1 cut(s) 827
Hpy188I TCNGA 4 cut(s) 100, 279, 588, 754
Hpy188III TCNNGA 5 cut(s) 25, 116, 515, 567, 798
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 3 cut(s) 408, 719, 919
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 5 cut(s) 257, 545, 725, 735, 900
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 569
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 1 cut(s) 441
Hsp92I GRCGYC 1 cut(s) 814
Hsp92II CATG 2 cut(s) 505, 931
Kzo9I GATC 2 cut(s) 360, 711
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 2 cut(s) 569, 653
Lsp1109I GCAGC 2 cut(s) 628, 856
LweI GCATC 2 cut(s) 165, 768
MaeI CTAG 3 cut(s) 54, 251, 938
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 136, 337
MalI GATC 2 cut(s) 362, 713
MbiI CCGCTC 1 cut(s) 131
MboI GATC 2 cut(s) 360, 711
MboII GAAGA 7 cut(s) 117, 392, 497, 585, 767, 831, 842
MfeI CAATTG 2 cut(s) 615, 665
MhlI GDGCHC 2 cut(s) 277, 387
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 6 cut(s) 12, 168, 239, 615, 657, 665
MluNI TGGCCA 1 cut(s) 20
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 313
Mox20I TGGCCA 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 759
MscI TGGCCA 1 cut(s) 20
MseI TTAA 4 cut(s) 171, 411, 660, 792
MslI CAYNNNNRTG 3 cut(s) 270, 730, 856
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 1 cut(s) 827
MspR9I CCNGG 2 cut(s) 729, 819
MunI CAATTG 2 cut(s) 615, 665
MvaI CCWGG 2 cut(s) 729, 819
MwoI GCNNNNNNNGC 2 cut(s) 93, 569
NdeII GATC 2 cut(s) 360, 711
NlaIII CATG 2 cut(s) 505, 931
NlaIV GGNNCC 3 cut(s) 148, 448, 508
NmuCI GTSAC 2 cut(s) 136, 337
NspI RCATGY 1 cut(s) 931
OliI CACNNNNGTG 1 cut(s) 730
PaeI GCATGC 1 cut(s) 931
PaeR7I CTCGAG 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 1 cut(s) 518
PkrI GCNGC 2 cut(s) 643, 871
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 941
PsiI TTATAA 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 387
Psp5II RGGWCCY 1 cut(s) 941
Psp6I CCWGG 2 cut(s) 727, 817
PspGI CCWGG 2 cut(s) 727, 817
PspN4I GGNNCC 3 cut(s) 148, 448, 508
PspPI GGNCC 2 cut(s) 262, 941
PspPPI RGGWCCY 1 cut(s) 941
PstNI CAGNNNCTG 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 482
RseI CAYNNNNRTG 3 cut(s) 270, 730, 856
SacI GAGCTC 1 cut(s) 387
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 4 cut(s) 171, 411, 660, 792
SatI GCNGC 2 cut(s) 642, 870
Sau3AI GATC 2 cut(s) 360, 711
Sau96I GGNCC 2 cut(s) 262, 941
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 2 cut(s) 729, 819
SduI GDGCHC 2 cut(s) 277, 387
SfaNI GCATC 2 cut(s) 165, 768
Sfr274I CTCGAG 1 cut(s) 116
SinI GGWCC 2 cut(s) 262, 941
SlaI CTCGAG 1 cut(s) 116
SmiMI CAYNNNNRTG 3 cut(s) 270, 730, 856
SmlI CTYRAG 4 cut(s) 66, 116, 304, 782
SmoI CTYRAG 4 cut(s) 66, 116, 304, 782
SphI GCATGC 1 cut(s) 931
Sse9I AATT 6 cut(s) 12, 168, 239, 615, 657, 665
SsiI CCGC 1 cut(s) 129
SspI AATATT 1 cut(s) 580
SspMI CTAG 3 cut(s) 54, 251, 938
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 727, 817
StyI CCWWGG 3 cut(s) 321, 843, 932
TaaI ACNGT 3 cut(s) 408, 719, 919
TaiI ACGT 1 cut(s) 444
TaqI TCGA 2 cut(s) 117, 184
TasI AATT 6 cut(s) 12, 168, 239, 615, 657, 665
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 4 cut(s) 171, 411, 660, 792
Tru9I TTAA 4 cut(s) 171, 411, 660, 792
TscAI CASTG 2 cut(s) 346, 411
TseFI GTSAC 2 cut(s) 136, 337
TseI GCWGC 2 cut(s) 641, 869
Tsp45I GTSAC 2 cut(s) 136, 337
TspDTI ATGAA 3 cut(s) 297, 320, 483
TspRI CASTG 2 cut(s) 346, 411
VpaK11BI GGWCC 2 cut(s) 262, 941
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 931
XhoI CTCGAG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 3 cut(s) 54, 251, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.