RchiOBHm_Chr5g0068421

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000208
Physical Location & Seq
Forward (+)
74402088 .. 74405218
3131 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34387

Sequence Viewer

Length: 801 bp
ATGGCTCAATATGGCGGAGGAAGATGGTCTCTTGAAGGAATGACTGCTCTCGTCACTGGTGGAACCAAAGGGATTGGGTTTGCAATTGTTGAGGAATTGGCCGGATTAGGTGCAAGGGTACATACTTGTTCTCGAAATGAAACCCAGCTCAATGAATGCTTGAGTGAATGGAAGAAGAAGGGTTTACATCAAGTCACTGGTTCAGTATGTGATGTGGTCTCAAAAATCCAGAGAGAGGAACTAATACAGAAGGTCTCATCACTGTTTCATGGGAAACTTAATATCCTTATAAACAACGTGGGAACTACTAATGCAAAGCCAACAACTGAGTGCACAGCCGAAGACTACTCATTTTTCATGAGTACCAATCTTGAATCTGCTTACACTATGTGCCAACTAGCACATCCTCTTCTCAAAACTTCAGGAGCTGGTAACATTATTTTTCTGTCTTCTGTTGCTGGTGTGGTATCAGTTGGGCAGGTTGCGAGTGTATATGGTGCAACTAAAGGAGCAATGAATCAATTGGCCAAAACTTTGGCTTGTGAGTGGGCAAAAGACAAGATTAGGATTAATAGTGTTGCACCTTGGGTCATCAGAACTCCTCTTGTTGAATTTATTTTGAATGACGAAAAGTTAATGGAGGCTGTCAACTCTCGAACCCCATTAGGACGTATAGGAGAGCCTGAAGAAGTGTCTGCCTTGGTGGCATTTCTCTGTCTTCCTGCAGCCTCATACATAACAGGGCAGACTATTTGCGTCGATGGAGGGATAACTATCAATGGCTTCCAGTTTCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

266

Amino Acids

28.48

Weight (kDa)

6.44

Isoelectric Point (pI)

24.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDR PF23441 13 - 258 4.7e-07 SDR-like rossmann domain
adh_short PF00106 15 - 208 1.6e-47 short chain dehydrogenase
KR PF08659 15 - 178 2.6e-11 KR domain
adh_short_C2 PF13561 23 - 258 1e-60 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 290
Acc36I ACCTGC 1 cut(s) 469
AciI CCGC 1 cut(s) 15
AcoI YGGCCR 2 cut(s) 99, 525
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 2 cut(s) 405, 705
AdeI CACNNNGTG 1 cut(s) 390
AfaI GTAC 2 cut(s) 120, 364
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 5 cut(s) 35, 374, 611, 622, 794
AluBI AGCT 2 cut(s) 148, 428
AluI AGCT 2 cut(s) 148, 428
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 3 cut(s) 33, 223, 259
Alw44I GTGCAC 1 cut(s) 331
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 2 cut(s) 99, 525
ApaLI GTGCAC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 1 cut(s) 611
AseI ATTAAT 1 cut(s) 570
BaeGI GKGCMC 1 cut(s) 335
BalI TGGCCA 1 cut(s) 527
BbsI GAAGAC 3 cut(s) 348, 441, 710
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 737
BccI CCATC 2 cut(s) 18, 755
BcoDI GTCTC 3 cut(s) 33, 223, 259
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 723
BfuAI ACCTGC 1 cut(s) 469
BglI GCCNNNNNGGC 1 cut(s) 704
BisI GCNGC 1 cut(s) 726
BlsI GCNGC 1 cut(s) 727
BmiI GGNNCC 1 cut(s) 64
BpiI GAAGAC 3 cut(s) 348, 441, 710
BpuEI CTTGAG 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 773
BsaI GGTCTC 3 cut(s) 33, 223, 259
BsaJI CCNNGG 2 cut(s) 584, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 3 cut(s) 61, 202, 787
Bse3DI GCAATG 1 cut(s) 519
Bse8I GATNNNNATC 1 cut(s) 773
BseDI CCNNGG 2 cut(s) 584, 699
BseGI GGATG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 773
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 3 cut(s) 61, 202, 787
BseRI GAGGAG 1 cut(s) 591
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 1 cut(s) 737
BseYI CCCAGC 1 cut(s) 144
BshFI GGCC 2 cut(s) 101, 527
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 3 cut(s) 33, 223, 259
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 2 cut(s) 101, 527
Bso31I GGTCTC 3 cut(s) 33, 223, 259
Bsp1286I GDGCHC 1 cut(s) 335
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 101, 527
BspCNI CTCAG 1 cut(s) 319
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 727
BspMI ACCTGC 1 cut(s) 469
BspTNI GGTCTC 3 cut(s) 33, 223, 259
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 3 cut(s) 61, 202, 787
BssECI CCNNGG 2 cut(s) 584, 699
BssT1I CCWWGG 2 cut(s) 584, 699
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 414
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 403
BstMAI GTCTC 3 cut(s) 33, 223, 259
BstMWI GCNNNNNNNGC 1 cut(s) 704
BstSFI CTRYAG 1 cut(s) 723
BstSLI GKGCMC 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 737
BstV2I GAAGAC 3 cut(s) 348, 441, 710
BstXI CCANNNNNNTGG 1 cut(s) 535
BsuRI GGCC 2 cut(s) 101, 527
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 3 cut(s) 54, 195, 260
BveI ACCTGC 1 cut(s) 469
CaiI CAGNNNCTG 1 cut(s) 428
CciI TCATGA 1 cut(s) 357
CseI GACGC 1 cut(s) 745
Csp6I GTAC 2 cut(s) 119, 363
CviAII CATG 2 cut(s) 269, 358
CviQI GTAC 2 cut(s) 119, 363
DdeI CTNAG 1 cut(s) 327
DraIII CACNNNGTG 1 cut(s) 390
EaeI YGGCCR 2 cut(s) 99, 525
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 584, 699
Eco31I GGTCTC 3 cut(s) 33, 223, 259
Eco57I CTGAAG 2 cut(s) 405, 705
EcoT14I CCWWGG 2 cut(s) 584, 699
ErhI CCWWGG 2 cut(s) 584, 699
FaeI CATG 2 cut(s) 272, 361
FatI CATG 2 cut(s) 268, 357
Fnu4HI GCNGC 1 cut(s) 726
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 726
FspBI CTAG 1 cut(s) 398
GluI GCNGC 1 cut(s) 726
GsaI CCCAGC 1 cut(s) 148
HaeIII GGCC 2 cut(s) 101, 527
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 745
Hin1II CATG 2 cut(s) 272, 361
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 2 cut(s) 374, 517
HpaII CCGG 1 cut(s) 102
Hpy166II GTNNAC 3 cut(s) 185, 333, 649
Hpy188I TCNGA 1 cut(s) 596
Hpy188III TCNNGA 7 cut(s) 32, 132, 229, 358, 371, 423, 654
Hpy8I GTNNAC 3 cut(s) 185, 333, 649
Hpy99I CGWCG 1 cut(s) 761
HpyAV CCTTC 3 cut(s) 29, 172, 244
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 2 cut(s) 297, 670
HpyCH4V TGCA 7 cut(s) 83, 113, 314, 333, 500, 581, 725
HpyF10VI GCNNNNNNNGC 1 cut(s) 704
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 2 cut(s) 297, 670
Hsp92II CATG 2 cut(s) 272, 361
LmnI GCTCC 2 cut(s) 425, 509
Lsp1109I GCAGC 1 cut(s) 737
MaeI CTAG 1 cut(s) 398
MaeII ACGT 2 cut(s) 297, 670
MaeIII GTNAC 3 cut(s) 52, 193, 431
MboII GAAGA 8 cut(s) 33, 184, 187, 353, 401, 441, 698, 710
MfeI CAATTG 2 cut(s) 84, 521
MhlI GDGCHC 1 cut(s) 335
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 4 cut(s) 84, 95, 521, 611
MluNI TGGCCA 1 cut(s) 527
MnlI CCTC 8 cut(s) 11, 85, 229, 417, 612, 634, 739, 758
Mox20I TGGCCA 1 cut(s) 527
MscI TGGCCA 1 cut(s) 527
MseI TTAA 3 cut(s) 279, 570, 635
Msp20I TGGCCA 1 cut(s) 527
MspI CCGG 1 cut(s) 102
MunI CAATTG 2 cut(s) 84, 521
Mva1269I GAATGC 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 704
NlaIII CATG 2 cut(s) 272, 361
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 52, 193
PagI TCATGA 1 cut(s) 357
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 374, 517
PkrI GCNGC 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 570
PsiI TTATAA 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 64
PstI CTGCAG 1 cut(s) 727
PstNI CAGNNNCTG 1 cut(s) 428
RsaI GTAC 2 cut(s) 120, 364
RsaNI GTAC 2 cut(s) 119, 363
SaqAI TTAA 3 cut(s) 279, 570, 635
SatI GCNGC 1 cut(s) 726
SduI GDGCHC 1 cut(s) 335
SetI ASST 8 cut(s) 112, 150, 255, 300, 430, 483, 586, 673
SfcI CTRYAG 1 cut(s) 723
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 4 cut(s) 84, 95, 521, 611
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 398
StyI CCWWGG 2 cut(s) 584, 699
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 2 cut(s) 300, 673
TaqI TCGA 3 cut(s) 133, 655, 759
TasI AATT 4 cut(s) 84, 95, 521, 611
TfiI GAWTC 2 cut(s) 374, 517
Tru1I TTAA 3 cut(s) 279, 570, 635
Tru9I TTAA 3 cut(s) 279, 570, 635
TscAI CASTG 3 cut(s) 61, 202, 267
TseFI GTSAC 2 cut(s) 52, 193
TseI GCWGC 1 cut(s) 725
Tsp45I GTSAC 2 cut(s) 52, 193
TspDTI ATGAA 5 cut(s) 153, 168, 257, 346, 530
TspRI CASTG 3 cut(s) 61, 202, 267
VneI GTGCAC 1 cut(s) 331
VspI ATTAAT 1 cut(s) 570
XapI RAATTY 1 cut(s) 611
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.