Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000208

Physical Location & Seq

Genomic Coordinates Forward (+)

12585856 .. 12588174

Gene Structure 2319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAGTCTTCAAGGGAAGCTGTTGTGGAGGAACTGTCAATTTTGGGAGCAAGAGTCCACACATGTGCTAGAGACGAGACTCAGCTTCAAGAACGTTTACGTGAATGGCAAGAAAAAGGGTTTCAGGTCACCACTTCTATCTGCGACGTTTCTTTGCGTGAGCAACGAGAGAAACTCATGGAAACCGTTTCCTCTCTCTTCCAAGGAAAACTCAACATCCTCGTGAACAATGTGGGAACGTTAATGCTCAAGCCGACCACAGAGTATACAGCAGAAGAATTCTCGTTTCTTATGGCTACAAATCTCGACTCAGCTTTCCATATTTCACAGCTTGCGCACCCTTTGTTGAAAGCCTCTGGCTCAGGGAGCATTGTGCTCATGTCCTCTATTGCCGGAGTCGTGCATGTCGGTGTTGGATCCATCTATGGAGCAACAAAAGGAGCCATGAATCAGTTGGCTAGAAACTTAGCTTGCGAATGGGCAAGCGACAACATAAGGACTAACGCTATTTGTCCATGGTTAATCACAACTCCTTTGATTAGTGATCTTCTCAGTGTTGAGGAGATGAAAAAAGAAGCAGAGGAAAGGACACCCATGGGGCGTGTGGGAGAGGCAAATGAAGTCTCACCGCTTGTGGCATTTCTTTGTCTTCCTGCAGCTTCTTATATTACTGGTCAAGTCATTTGTGTTGATGGAGGTCTCACTGTTAATGGCTTCTCCTATCAGCCACATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0004022 GO:0006950 GO:0006952 GO:0007568 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016616 GO:0032502 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

245

Amino Acids

26.69

Weight (kDa)

5.09

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	7 - 235	5.5e-56	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	7 - 182	9.7e-41	short chain dehydrogenase
KR	PF08659	24 - 155	1.8e-09	KR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca	FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica	MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica	Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis	pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis	RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata	RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora	Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa	Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha	Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana	Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	266
AciI	CCGC	1 cut(s)	629
AclI	AACGTT	2 cut(s)	94, 239
AclWI	GGATC	2 cut(s)	411, 424
AcsI	RAATTY	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	12, 89, 349
AleI	CACNNNNGTG	1 cut(s)	63
AluBI	AGCT	6 cut(s)	20, 85, 314, 331, 470, 659
AluI	AGCT	6 cut(s)	20, 85, 314, 331, 470, 659
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	4 cut(s)	66, 71, 628, 704
AlwI	GGATC	2 cut(s)	411, 424
ApeKI	GCWGC	1 cut(s)	656
ApoI	RAATTY	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	121, 618
BamHI	GGATCC	1 cut(s)	416
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	2 cut(s)	428, 686
BcoDI	GTCTC	4 cut(s)	66, 71, 628, 704
BfaI	CTAG	2 cut(s)	69, 459
BfmI	CTRYAG	1 cut(s)	654
BisI	GCNGC	1 cut(s)	657
BlsI	GCNGC	1 cut(s)	658
BmiI	GGNNCC	2 cut(s)	418, 442
BpiI	GAAGAC	1 cut(s)	641
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bpu10I	CCTNAGC	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	3 cut(s)	202, 515, 594
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 39, 50, 69
Bse1I	ACTGG	1 cut(s)	676
BseDI	CCNNGG	3 cut(s)	202, 515, 594
BseGI	GGATG	1 cut(s)	216
BseMII	CTCAG	4 cut(s)	95, 324, 375, 565
BseNI	ACTGG	1 cut(s)	676
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	1 cut(s)	668
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	393
BsmAI	GTCTC	4 cut(s)	66, 71, 628, 704
BsmBI	CGTCTC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	416, 544
Bsp19I	CCATGG	2 cut(s)	515, 594
BspACI	CCGC	1 cut(s)	629
BspCNI	CTCAG	4 cut(s)	94, 323, 374, 564
BspLI	GGNNCC	2 cut(s)	418, 442
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	2 cut(s)	411, 424
BspTNI	GGTCTC	1 cut(s)	704
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	3 cut(s)	202, 515, 594
BssMI	GATC	2 cut(s)	416, 544
BssNAI	GTATAC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	3 cut(s)	202, 515, 594
Bst1107I	GTATAC	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	36, 187, 706
Bst6I	CTCTTC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	333, 472, 484
BstDEI	CTNAG	5 cut(s)	81, 310, 361, 466, 551
BstDSI	CCRYGG	2 cut(s)	515, 594
BstEII	GGTNACC	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	2 cut(s)	419, 547
BstMAI	GTCTC	4 cut(s)	66, 71, 628, 704
BstMBI	GATC	2 cut(s)	416, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstNSI	RCATGY	3 cut(s)	66, 407, 734
BstPI	GGTNACC	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	668
BstV2I	GAAGAC	1 cut(s)	641
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BstZ17I	GTATAC	1 cut(s)	267
BtgI	CCRYGG	2 cut(s)	515, 594
BtsCI	GGATG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	559, 702
Cac8I	GCNNGC	3 cut(s)	333, 472, 484
CfoI	GCGC	1 cut(s)	337
CviAII	CATG	8 cut(s)	63, 178, 379, 404, 445, 516, 595, 731
DdeI	CTNAG	5 cut(s)	81, 310, 361, 466, 551
DpnI	GATC	2 cut(s)	418, 546
DpnII	GATC	2 cut(s)	416, 544
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	3 cut(s)	202, 515, 594
Eco31I	GGTCTC	1 cut(s)	704
Eco91I	GGTNACC	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	278
EcoT14I	CCWWGG	3 cut(s)	202, 515, 594
ErhI	CCWWGG	3 cut(s)	202, 515, 594
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	8 cut(s)	66, 181, 382, 407, 448, 519, 598, 734
FatI	CATG	8 cut(s)	62, 177, 378, 403, 444, 515, 594, 730
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	1 cut(s)	657
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	657
FspBI	CTAG	2 cut(s)	69, 459
FspI	TGCGCA	1 cut(s)	336
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	657
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	8 cut(s)	66, 181, 382, 407, 448, 519, 598, 734
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	6 cut(s)	5, 54, 79, 308, 396, 448
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	2 cut(s)	121, 618
Hpy166II	GTNNAC	4 cut(s)	58, 98, 226, 267
Hpy188III	TCNNGA	3 cut(s)	89, 223, 305
Hpy8I	GTNNAC	4 cut(s)	58, 98, 226, 267
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	3 cut(s)	36, 187, 706
HpyCH4IV	ACGT	4 cut(s)	94, 100, 147, 239
HpyCH4V	TGCA	2 cut(s)	403, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	5 cut(s)	81, 310, 361, 466, 551
HpySE526I	ACGT	4 cut(s)	94, 100, 147, 239
Hsp92II	CATG	8 cut(s)	66, 181, 382, 407, 448, 519, 598, 734
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	416, 544
LmnI	GCTCC	4 cut(s)	47, 366, 428, 440
LpnPI	CCDG	6 cut(s)	110, 342, 348, 406, 657, 666
Lsp1109I	GCAGC	1 cut(s)	668
MaeI	CTAG	2 cut(s)	69, 459
MaeII	ACGT	4 cut(s)	94, 100, 147, 239
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	418, 546
MboI	GATC	2 cut(s)	416, 544
MboII	GAAGA	4 cut(s)	190, 287, 539, 641
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	2 cut(s)	39, 278
MlyI	GAGTC	5 cut(s)	14, 63, 73, 302, 405
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	9 cut(s)	22, 202, 230, 364, 394, 553, 574, 604, 689
MseI	TTAA	3 cut(s)	242, 521, 708
MslI	CAYNNNNRTG	3 cut(s)	63, 221, 408
MspI	CCGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	366
NcoI	CCATGG	2 cut(s)	515, 594
NdeII	GATC	2 cut(s)	416, 544
NlaIII	CATG	8 cut(s)	66, 181, 382, 407, 448, 519, 598, 734
NlaIV	GGNNCC	2 cut(s)	418, 442
NmuCI	GTSAC	1 cut(s)	127
NsbI	TGCGCA	1 cut(s)	336
NspI	RCATGY	3 cut(s)	66, 407, 734
OliI	CACNNNNGTG	1 cut(s)	63
PciI	ACATGT	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	1 cut(s)	658
PleI	GAGTC	5 cut(s)	13, 62, 73, 302, 404
PpsI	GAGTC	5 cut(s)	13, 62, 73, 302, 404
Ppu21I	YACGTR	1 cut(s)	101
PscI	ACATGT	1 cut(s)	62
Psp1406I	AACGTT	2 cut(s)	94, 239
PspEI	GGTNACC	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	418, 442
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	416
RseI	CAYNNNNRTG	3 cut(s)	63, 221, 408
SaqAI	TTAA	3 cut(s)	242, 521, 708
SatI	GCNGC	1 cut(s)	657
Sau3AI	GATC	2 cut(s)	416, 544
SchI	GAGTC	5 cut(s)	14, 63, 73, 302, 405
SduI	GDGCHC	1 cut(s)	378
SfcI	CTRYAG	1 cut(s)	654
SmiMI	CAYNNNNRTG	3 cut(s)	63, 221, 408
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	39, 278
SsiI	CCGC	1 cut(s)	629
SspMI	CTAG	2 cut(s)	69, 459
StyI	CCWWGG	3 cut(s)	202, 515, 594
TaaI	ACNGT	3 cut(s)	36, 187, 706
TaiI	ACGT	4 cut(s)	97, 103, 150, 242
TaqI	TCGA	1 cut(s)	306
TasI	AATT	2 cut(s)	39, 278
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	3 cut(s)	242, 521, 708
Tru9I	TTAA	3 cut(s)	242, 521, 708
TscAI	CASTG	2 cut(s)	559, 709
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	461, 581, 633
TspRI	CASTG	2 cut(s)	559, 709
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	3 cut(s)	66, 407, 734
XcmI	CCANNNNNNNNNTGG	2 cut(s)	451, 601
XmiI	GTMKAC	1 cut(s)	266
XspI	CTAG	2 cut(s)	69, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.