Prupe.6G069500_v2.0.a1

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000208
Physical Location & Seq
Reverse (-)
4766255 .. 4768218
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G069500.1

Sequence Viewer

Length: 882 bp
ATGGATGGGTGGATGAATTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAATGGCTAAGGCACATATCAATGGCAAAGATCGTAGATGGTCTCTTCACGGAATGACTGCTCTTGTCACTGGAGGAACGAAAGGGCTCGGGCATGCTATTGTGGAGGAATTGGCAGGGCTAGGTGCAATTGTGCATACTTGTTCTCGAAATGAAGGCCAGCTCAATGACTGCTTGAGTCAATGGAAGATGAAGGGTTTTCATCAAATCACTGGTTCAGTATGTGATCTGGTGTCAAGAACCCAACGGCATGAGCTAATAAACGAAGTCTCATCACAGTTCAACGGGAAACTTAACATCCTTATAAATAATGTGGGAACTGCTGAAGTAAAACCAACAATCGAGAGCACAGCTGAAGATTACTCATTTATTATGAGCACCAATCTTGAATCAGCTTACAATTTGTCCCAACTTGCACATCCTCTTTTGAAAGCTTCAGGAGCTGGTAACATTGTTTTTATGTCTTCTGTTGCTGGCGTTGTATCAATTGGGGAGGTTGGAAGTATATATGCTGCCACTAAAGGAGCAATAAATCAATTGGCAAAATCCTTGGCTTGTGAGTGGGGAAAAGATAACATAAGGATCAACAGTGTTGCACCTTGGTTCATCAAAACTCTCACGGCTGAACCTTATCTCAGTGACGAAAAATATTTGAAGGCTATTAGCTCGCGAACCCCGTTAGGACGGCCGGGAGAGCCGGAAGAGGTGGCAGCCTTGGTGTCATTTCTATGCCTCCCTGCAGCTTCTTACATAACTGGACAGACTATTTGCATCGACGGAGGTTTGACTGTCAATGGCCTCCTCTTCCAAGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

294

Amino Acids

31.91

Weight (kDa)

6.4

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
AccII CGCG 1 cut(s) 733
AclWI GGATC 1 cut(s) 653
AcoI YGGCCR 1 cut(s) 749
AcuI CTGAAG 3 cut(s) 408, 438, 483
AgsI TTSAA 4 cut(s) 346, 452, 493, 718
AluBI AGCT 8 cut(s) 226, 319, 416, 458, 497, 506, 729, 806
AluI AGCT 8 cut(s) 226, 319, 416, 458, 497, 506, 729, 806
Alw21I GWGCWC 2 cut(s) 413, 443
Alw26I GTCTC 2 cut(s) 111, 337
AlwI GGATC 1 cut(s) 653
AlwNI CAGNNNCTG 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 3 cut(s) 220, 749, 859
ApeKI GCWGC 3 cut(s) 575, 773, 803
ArsI GACNNNNNNTTYG 2 cut(s) 813, 845
AsuC2I CCSGG 1 cut(s) 753
AvaI CYCGRG 1 cut(s) 152
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 2 cut(s) 413, 443
BbvI GCAGC 3 cut(s) 562, 785, 815
BccI CCATC 1 cut(s) 96
BceAI ACGGC 3 cut(s) 326, 699, 764
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 2 cut(s) 111, 337
BfaI CTAG 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 801
BisI GCNGC 3 cut(s) 576, 774, 804
BlsI GCNGC 3 cut(s) 577, 775, 805
Bme1390I CCNGG 1 cut(s) 753
BmeT110I CYCGRG 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 1 cut(s) 843
BpiI GAAGAC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 753
BsaI GGTCTC 1 cut(s) 111
BsaJI CCNNGG 4 cut(s) 612, 662, 777, 871
Bse1I ACTGG 3 cut(s) 139, 280, 823
BseDI CCNNGG 4 cut(s) 612, 662, 777, 871
BseGI GGATG 4 cut(s) 10, 18, 360, 481
BseMII CTCAG 1 cut(s) 712
BseNI ACTGG 3 cut(s) 139, 280, 823
BseRI GAGGAG 1 cut(s) 854
BseX3I CGGCCG 1 cut(s) 749
BseXI GCAGC 3 cut(s) 562, 785, 815
Bsh1236I CGCG 1 cut(s) 733
Bsh1285I CGRYCG 1 cut(s) 752
BshFI GGCC 3 cut(s) 222, 751, 861
BsiEI CGRYCG 1 cut(s) 752
BsiHKAI GWGCWC 2 cut(s) 413, 443
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 752, 761
BslFI GGGAC 1 cut(s) 454
BsmAI GTCTC 2 cut(s) 111, 337
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 3 cut(s) 222, 751, 861
Bso31I GGTCTC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 3 cut(s) 153, 413, 443
Bsp143I GATC 3 cut(s) 94, 289, 645
Bsp68I TCGCGA 1 cut(s) 733
BspANI GGCC 3 cut(s) 222, 751, 861
BspCNI CTCAG 1 cut(s) 711
BspFNI CGCG 1 cut(s) 733
BspMAI CTGCAG 1 cut(s) 805
BspPI GGATC 1 cut(s) 653
BspTNI GGTCTC 1 cut(s) 111
BsrI ACTGG 3 cut(s) 139, 280, 823
BssECI CCNNGG 4 cut(s) 612, 662, 777, 871
BssMI GATC 3 cut(s) 94, 289, 645
BssT1I CCWWGG 4 cut(s) 612, 662, 777, 871
Bst4CI ACNGT 3 cut(s) 342, 653, 853
Bst6I CTCTTC 3 cut(s) 114, 759, 872
BstC8I GCNNGC 4 cut(s) 159, 224, 538, 731
BstDEI CTNAG 2 cut(s) 72, 698
BstF5I GGATG 4 cut(s) 10, 18, 360, 481
BstFNI CGCG 1 cut(s) 733
BstKTI GATC 3 cut(s) 97, 292, 648
BstMAI GTCTC 2 cut(s) 111, 337
BstMBI GATC 3 cut(s) 94, 289, 645
BstMCI CGRYCG 1 cut(s) 752
BstMWI GCNNNNNNNGC 2 cut(s) 503, 757
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 1 cut(s) 801
BstUI CGCG 1 cut(s) 733
BstV1I GCAGC 3 cut(s) 562, 785, 815
BstV2I GAAGAC 1 cut(s) 519
BstZI CGGCCG 1 cut(s) 749
BsuRI GGCC 3 cut(s) 222, 751, 861
BtsCI GGATG 4 cut(s) 10, 18, 360, 481
BtsIMutI CAGTG 4 cut(s) 132, 273, 658, 706
BtuMI TCGCGA 1 cut(s) 733
Cac8I GCNNGC 4 cut(s) 159, 224, 538, 731
CaiI CAGNNNCTG 1 cut(s) 506
CviAII CATG 3 cut(s) 158, 314, 879
DdeI CTNAG 2 cut(s) 72, 698
DpnI GATC 3 cut(s) 96, 291, 647
DpnII GATC 3 cut(s) 94, 289, 645
EaeI YGGCCR 1 cut(s) 749
EagI CGGCCG 1 cut(s) 749
Eam1104I CTCTTC 3 cut(s) 114, 759, 872
EarI CTCTTC 3 cut(s) 114, 759, 872
EclXI CGGCCG 1 cut(s) 749
Eco130I CCWWGG 4 cut(s) 612, 662, 777, 871
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 111
Eco52I CGGCCG 1 cut(s) 749
Eco57I CTGAAG 3 cut(s) 408, 438, 483
Eco88I CYCGRG 1 cut(s) 152
EcoT14I CCWWGG 4 cut(s) 612, 662, 777, 871
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 4 cut(s) 612, 662, 777, 871
FaeI CATG 3 cut(s) 161, 317, 882
FaqI GGGAC 1 cut(s) 454
FatI CATG 3 cut(s) 157, 313, 878
Fnu4HI GCNGC 3 cut(s) 576, 774, 804
FokI GGATG 4 cut(s) 17, 25, 347, 468
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 3 cut(s) 576, 774, 804
FspBI CTAG 1 cut(s) 185
GluI GCNGC 3 cut(s) 576, 774, 804
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 3 cut(s) 222, 751, 861
HapII CCGG 2 cut(s) 752, 761
Hin1II CATG 3 cut(s) 161, 317, 882
HindIII AAGCTT 1 cut(s) 495
HinfI GANTC 2 cut(s) 241, 452
HpaII CCGG 2 cut(s) 752, 761
Hpy188III TCNNGA 6 cut(s) 210, 300, 406, 449, 501, 732
Hpy99I CGWCG 1 cut(s) 842
HpyAV CCTTC 3 cut(s) 212, 250, 712
HpyCH4III ACNGT 3 cut(s) 342, 653, 853
HpyCH4V TGCA 6 cut(s) 191, 199, 479, 659, 803, 834
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 757
HpyF3I CTNAG 2 cut(s) 72, 698
Hsp92II CATG 3 cut(s) 161, 317, 882
Kzo9I GATC 3 cut(s) 94, 289, 645
LmnI GCTCC 3 cut(s) 503, 587, 875
Lsp1109I GCAGC 3 cut(s) 562, 785, 815
LweI GCATC 1 cut(s) 843
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 3 cut(s) 130, 509, 701
MalI GATC 3 cut(s) 96, 291, 647
MboI GATC 3 cut(s) 94, 289, 645
MboII GAAGA 6 cut(s) 101, 262, 431, 519, 776, 859
MfeI CAATTG 3 cut(s) 192, 549, 599
MhlI GDGCHC 3 cut(s) 153, 413, 443
MluCI AATT 6 cut(s) 16, 173, 192, 463, 549, 599
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 9 cut(s) 131, 163, 495, 550, 760, 806, 836, 872, 875
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 2 cut(s) 84, 790
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 2 cut(s) 752, 761
MspR9I CCNGG 1 cut(s) 753
MunI CAATTG 3 cut(s) 192, 549, 599
MvnI CGCG 1 cut(s) 733
MwoI GCNNNNNNNGC 2 cut(s) 503, 757
NciI CCSGG 1 cut(s) 753
NdeII GATC 3 cut(s) 94, 289, 645
NlaIII CATG 3 cut(s) 161, 317, 882
NmuCI GTSAC 2 cut(s) 130, 701
NruI TCGCGA 1 cut(s) 733
NspI RCATGY 1 cut(s) 161
PaeI GCATGC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 737
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 3 cut(s) 577, 775, 805
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PsiI TTATAA 1 cut(s) 368
PstI CTGCAG 1 cut(s) 805
PstNI CAGNNNCTG 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 416
RruI TCGCGA 1 cut(s) 733
RseI CAYNNNNRTG 2 cut(s) 84, 790
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 3 cut(s) 576, 774, 804
Sau3AI GATC 3 cut(s) 94, 289, 645
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 3 cut(s) 153, 413, 443
SfaNI GCATC 1 cut(s) 843
SfcI CTRYAG 1 cut(s) 801
SmiMI CAYNNNNRTG 2 cut(s) 84, 790
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SphI GCATGC 1 cut(s) 161
Sse9I AATT 6 cut(s) 16, 173, 192, 463, 549, 599
SspI AATATT 1 cut(s) 713
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 4 cut(s) 612, 662, 777, 871
TaaI ACNGT 3 cut(s) 342, 653, 853
TaqI TCGA 3 cut(s) 211, 405, 837
TasI AATT 6 cut(s) 16, 173, 192, 463, 549, 599
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 4 cut(s) 139, 280, 658, 706
TseFI GTSAC 2 cut(s) 130, 701
TseI GCWGC 3 cut(s) 575, 773, 803
Tsp45I GTSAC 2 cut(s) 130, 701
TspDTI ATGAA 5 cut(s) 29, 231, 254, 269, 658
TspGWI ACGGA 2 cut(s) 129, 855
TspRI CASTG 4 cut(s) 139, 280, 658, 706
XceI RCATGY 1 cut(s) 161
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.