Prupe.6G069200_v2.0.a1

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000208
Physical Location & Seq
Reverse (-)
4747960 .. 4749977
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G069200.1

Sequence Viewer

Length: 813 bp
ATGGCGCAGGCAAATAGCAATGGCAAGGATAGTAGATGGTCTCTTCACGGAATGACTGCTCTTGTCACTGGTGGAACCAAAGGAATTGGGTATGCTATTGTGGAGGAATTGGCGGGGCTAGGTGCAACTATACATACCTGTTCTCGTAATGAAGTTCAGCTTAACGACTGCTTGAGCCAATGGAAAATGAAGGGTTTTGATCAAGTCACTGGTTCGGTATGTGATGTAGTCTCAAAAGCTCAACGAGAAGAGCTTATAAACAAGGTCTCATCACTATTTCACGGCAAACTAAACATCCTTGTAAACAACGTGGGAACTGCCGAAATAAAACCAGCAATCGAGAACACAACTGAAGATTACTCATTTATTATGAGTACCAATCTTGAATCTGCTTACCATTTTTCCCAACTTGCACATCCTCTTTTGAAAGCTTCAGGAGCTGGGAACATTATTTTTATGTCTTCTGTTGCTGGCGTTGTATCACTTGGGACGGCTAGTATATATGCTGCCACAAAAGGAGCAATGAACCAATTGGCCAAAAACTTGGCATGTGAGTGGGCAAAAGACAACATAAGGACCAACAGTGTTGCACCTTGGTTCATCAGAACTCCCCTCACTGAGCCTCTTCTGAGTAACCAAAAATTTTTGGAGGCTGTCAACTCTCGATGCCCTTTAGGACGGACTGGAGAGCCAAAAGAGGTGTCTGCCTTAGTGGCATTTCTATGCTTCCCTGCAGCGTCTTACATAACGGGCCAAACTATCTGCGTCGATGGAGGTTTCACTGTCAATGGCCTCCTCTTCCAAGGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

271

Amino Acids

28.84

Weight (kDa)

6.94

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AciI CCGC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 2 cut(s) 372, 417
AfaI GTAC 1 cut(s) 376
AgsI TTSAA 2 cut(s) 386, 427
AluBI AGCT 5 cut(s) 160, 239, 253, 431, 440
AluI AGCT 5 cut(s) 160, 239, 253, 431, 440
Alw26I GTCTC 3 cut(s) 45, 235, 271
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 3 cut(s) 534, 751, 790
ApeKI GCWGC 2 cut(s) 506, 734
ApoI RAATTY 1 cut(s) 641
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 576, 751, 806
AvaII GGWCC 2 cut(s) 576, 806
BalI TGGCCA 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 493, 746
BccI CCATC 2 cut(s) 30, 764
BceAI ACGGC 2 cut(s) 298, 507
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 3 cut(s) 45, 235, 271
BfaI CTAG 2 cut(s) 119, 495
BfmI CTRYAG 1 cut(s) 732
BglI GCCNNNNNGGC 1 cut(s) 713
BisI GCNGC 2 cut(s) 507, 735
BlsI GCNGC 2 cut(s) 508, 736
Bme18I GGWCC 2 cut(s) 576, 806
BmgT120I GGNCC 3 cut(s) 576, 751, 806
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 1 cut(s) 656
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 193
BsaI GGTCTC 2 cut(s) 45, 271
BsaJI CCNNGG 2 cut(s) 593, 802
Bse1I ACTGG 3 cut(s) 73, 214, 688
Bse3DI GCAATG 2 cut(s) 25, 528
BseDI CCNNGG 2 cut(s) 593, 802
BseGI GGATG 2 cut(s) 294, 415
BseMI GCAATG 2 cut(s) 25, 528
BseMII CTCAG 2 cut(s) 609, 620
BseNI ACTGG 3 cut(s) 73, 214, 688
BseRI GAGGAG 1 cut(s) 785
BseXI GCAGC 2 cut(s) 493, 746
BseYI CCCAGC 1 cut(s) 440
BshFI GGCC 3 cut(s) 536, 753, 792
BslFI GGGAC 1 cut(s) 502
BsmAI GTCTC 3 cut(s) 45, 235, 271
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 3 cut(s) 536, 753, 792
Bso31I GGTCTC 2 cut(s) 45, 271
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 1 cut(s) 113
BspANI GGCC 3 cut(s) 536, 753, 792
BspCNI CTCAG 2 cut(s) 610, 621
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 736
BspQI GCTCTTC 1 cut(s) 243
BspTNI GGTCTC 2 cut(s) 45, 271
BsrDI GCAATG 2 cut(s) 25, 528
BsrI ACTGG 3 cut(s) 73, 214, 688
BssECI CCNNGG 2 cut(s) 593, 802
BssMI GATC 1 cut(s) 199
BssT1I CCWWGG 2 cut(s) 593, 802
Bst4CI ACNGT 2 cut(s) 584, 784
Bst6I CTCTTC 4 cut(s) 48, 243, 630, 803
BstC8I GCNNGC 2 cut(s) 9, 472
BstDEI CTNAG 3 cut(s) 618, 629, 709
BstF5I GGATG 2 cut(s) 294, 415
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 3 cut(s) 45, 235, 271
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 437, 713
BstNSI RCATGY 1 cut(s) 552
BstSFI CTRYAG 1 cut(s) 732
BstV1I GCAGC 2 cut(s) 493, 746
BstV2I GAAGAC 1 cut(s) 453
BstXI CCANNNNNNTGG 1 cut(s) 544
BsuRI GGCC 3 cut(s) 536, 753, 792
BtsCI GGATG 2 cut(s) 294, 415
BtsIMutI CAGTG 5 cut(s) 66, 207, 589, 615, 780
Cac8I GCNNGC 2 cut(s) 9, 472
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 3 cut(s) 576, 751, 806
CseI GACGC 2 cut(s) 726, 754
Csp6I GTAC 1 cut(s) 375
CviAII CATG 2 cut(s) 549, 810
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 3 cut(s) 618, 629, 709
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 4 cut(s) 48, 243, 630, 803
EarI CTCTTC 4 cut(s) 48, 243, 630, 803
Eco130I CCWWGG 2 cut(s) 593, 802
Eco31I GGTCTC 2 cut(s) 45, 271
Eco47I GGWCC 2 cut(s) 576, 806
Eco57I CTGAAG 2 cut(s) 372, 417
EcoT14I CCWWGG 2 cut(s) 593, 802
ErhI CCWWGG 2 cut(s) 593, 802
FaeI CATG 2 cut(s) 552, 813
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FaqI GGGAC 1 cut(s) 502
FatI CATG 2 cut(s) 548, 809
FauI CCCGC 1 cut(s) 106
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 507, 735
FokI GGATG 2 cut(s) 281, 402
Fsp4HI GCNGC 2 cut(s) 507, 735
FspBI CTAG 2 cut(s) 119, 495
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 507, 735
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 3 cut(s) 536, 753, 792
HgaI GACGC 2 cut(s) 726, 754
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 552, 813
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 1 cut(s) 386
Hpy166II GTNNAC 2 cut(s) 304, 658
Hpy188I TCNGA 2 cut(s) 605, 630
Hpy188III TCNNGA 4 cut(s) 340, 383, 435, 663
Hpy8I GTNNAC 2 cut(s) 304, 658
Hpy99I CGWCG 1 cut(s) 770
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 584, 784
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 4 cut(s) 125, 413, 590, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 713
HpyF3I CTNAG 3 cut(s) 618, 629, 709
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 2 cut(s) 552, 813
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 1 cut(s) 199
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 2 cut(s) 437, 518
LpnPI CCDG 9 cut(s) 54, 151, 195, 345, 420, 426, 456, 669, 744
Lsp1109I GCAGC 2 cut(s) 493, 746
LweI GCATC 1 cut(s) 656
MaeI CTAG 2 cut(s) 119, 495
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 3 cut(s) 64, 205, 632
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 6 cut(s) 35, 260, 365, 453, 617, 790
MfeI CAATTG 1 cut(s) 530
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 4 cut(s) 84, 107, 530, 641
MluNI TGGCCA 1 cut(s) 536
MnlI CCTC 9 cut(s) 97, 429, 623, 633, 643, 691, 767, 803, 806
Mox20I TGGCCA 1 cut(s) 536
MscI TGGCCA 1 cut(s) 536
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 2 cut(s) 553, 721
Msp20I TGGCCA 1 cut(s) 536
MunI CAATTG 1 cut(s) 530
MwoI GCNNNNNNNGC 2 cut(s) 437, 713
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 552, 813
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 64, 205
NspI RCATGY 1 cut(s) 552
PciSI GCTCTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 2 cut(s) 508, 736
PsiI TTATAA 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 3 cut(s) 576, 751, 806
PstI CTGCAG 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
RseI CAYNNNNRTG 2 cut(s) 553, 721
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 2 cut(s) 507, 735
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 3 cut(s) 576, 751, 806
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 1 cut(s) 732
SinI GGWCC 2 cut(s) 576, 806
SmiMI CAYNNNNRTG 2 cut(s) 553, 721
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 4 cut(s) 84, 107, 530, 641
SsiI CCGC 1 cut(s) 113
SspMI CTAG 2 cut(s) 119, 495
StyI CCWWGG 2 cut(s) 593, 802
TaaI ACNGT 2 cut(s) 584, 784
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 339, 664, 768
TasI AATT 4 cut(s) 84, 107, 530, 641
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 5 cut(s) 73, 214, 589, 622, 787
TseFI GTSAC 2 cut(s) 64, 205
TseI GCWGC 2 cut(s) 506, 734
Tsp45I GTSAC 2 cut(s) 64, 205
TspDTI ATGAA 4 cut(s) 165, 203, 539, 589
TspGWI ACGGA 2 cut(s) 63, 694
TspRI CASTG 5 cut(s) 73, 214, 589, 622, 787
VpaK11BI GGWCC 2 cut(s) 576, 806
XapI RAATTY 1 cut(s) 641
XceI RCATGY 1 cut(s) 552
XspI CTAG 2 cut(s) 119, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.