Rroxscaffold_5G00353020

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000208
Physical Location & Seq
Reverse (-)
30464378 .. 30471502
7125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00353020.1

Sequence Viewer

Length: 828 bp
ATGCCTACACATCAACGAAGCGTGAGCAACTCCACCGGTTGCTTCTTGGTGGTCACCAGCTACGAAAAAGCTGATGTGGTGACCATGGAGGGGAAAATCAGGTTTCCACCGGAGGAATTGGCGAGGCTAGGTGCAAAGGTTCATACTTGTGCTCGGAATGAAGTTCAACTCAATGAGCGCTTGAGTCAATGGAAGACCAAGGGTTTTCATCAAGTCACTGGTTCTGTATGTGATTTGATCTCAAAGCCCCAACGAGAAGAGCTCATAAACAAGGTCTCATCACTGTTCAATGGAAAACTAAACATCCTTATAAACAACGTGGGAACCAATATAACAAAGCCCACAACTGATTACACAGCTGAAGATTATTCATTTCTTATGGGAACCAATCTTGAATCTTATTACAATATGTGCCAACTTGCACATCCTCTCCTCAAAGCTTCAGGAGCTGGTAATATTGTTCTTATATCTTCTATTGCTGGTGTGATATCAATTGGGGGTATTGGAAGTGTCTATGCTGCCACTAAAGGAGCAATTAACCAATTGGCAAGATACTTGGCTTGCGAGTGGGGAAAAGACAAGATTAGGATCAACAGTATTGCACCTGGGTTCATACGAACTCCCTTGGCTGAAGATATTCTCAATAACCAAACGATGCTTGAGGCTATTAACTCTGGAACACCTTTAGGACGCCATGGCCAGCCGGAAGAGGTTTCTTCCTTGGTGGCATTTCTATGCTTGCCTGCTGCCTCATACATAACTGGGCAGACTATTTGCATTGACGGAGGGATGACTGTTGATGGCATAAGCTTATGCTTTCAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

275

Amino Acids

29.69

Weight (kDa)

6.94

Isoelectric Point (pI)

24.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 39 - 265 1.6e-56 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 39 - 215 3.9e-38 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 1 cut(s) 697
AcuI CTGAAG 3 cut(s) 381, 426, 651
AcyI GRCGYC 1 cut(s) 691
AfeI AGCGCT 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 90
AgeI ACCGGT 1 cut(s) 35
AgsI TTSAA 4 cut(s) 167, 289, 395, 821
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 7 cut(s) 60, 71, 262, 359, 440, 449, 810
AluI AGCT 7 cut(s) 60, 71, 262, 359, 440, 449, 810
Alw21I GWGCWC 2 cut(s) 154, 264
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 1 cut(s) 596
AlwNI CAGNNNCTG 1 cut(s) 449
Aor51HI AGCGCT 1 cut(s) 179
AoxI GGCC 1 cut(s) 697
ApeKI GCWGC 2 cut(s) 518, 746
AsiGI ACCGGT 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 636
AspLEI GCGC 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 46, 91
BalI TGGCCA 1 cut(s) 699
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 2 cut(s) 154, 264
BbvI GCAGC 2 cut(s) 505, 733
BccI CCATC 1 cut(s) 794
BciT130I CCWGG 1 cut(s) 606
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 128, 826
BfoI RGCGCY 1 cut(s) 181
BisI GCNGC 2 cut(s) 519, 747
BlsI GCNGC 2 cut(s) 520, 748
Bme1390I CCNGG 1 cut(s) 606
BmiI GGNNCC 2 cut(s) 325, 385
BmrFI CCNGG 1 cut(s) 606
BmrI ACTGGG 1 cut(s) 771
BmsI GCATC 1 cut(s) 645
BmuI ACTGGG 1 cut(s) 771
BpiI GAAGAC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 246, 278
BpuEI CTTGAG 2 cut(s) 202, 680
BsaBI GATNNNNATC 1 cut(s) 587
BsaHI GRCGYC 1 cut(s) 691
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 6 cut(s) 84, 198, 605, 624, 694, 720
BsaWI WCCGGW 2 cut(s) 35, 109
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 223, 766
Bse8I GATNNNNATC 1 cut(s) 587
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 6 cut(s) 84, 198, 605, 624, 694, 720
BseGI GGATG 3 cut(s) 303, 424, 795
BseJI GATNNNNATC 1 cut(s) 587
BseLI CCNNNNNNNGG 1 cut(s) 90
BseNI ACTGG 2 cut(s) 223, 766
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 2 cut(s) 505, 733
BshFI GGCC 1 cut(s) 699
BshTI ACCGGT 1 cut(s) 35
BsiHKAI GWGCWC 2 cut(s) 154, 264
BsiSI CCGG 3 cut(s) 36, 110, 704
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 280
BsnI GGCC 1 cut(s) 699
Bso31I GGTCTC 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 154, 264
Bsp143I GATC 2 cut(s) 237, 588
Bsp19I CCATGG 2 cut(s) 84, 694
BspANI GGCC 1 cut(s) 699
BspLI GGNNCC 2 cut(s) 325, 385
BspPI GGATC 1 cut(s) 596
BspQI GCTCTTC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 2 cut(s) 223, 766
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 6 cut(s) 84, 198, 605, 624, 694, 720
BssMI GATC 2 cut(s) 237, 588
BssNI GRCGYC 1 cut(s) 691
BssT1I CCWWGG 5 cut(s) 84, 198, 624, 694, 720
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 3 cut(s) 285, 596, 796
Bst6I CTCTTC 2 cut(s) 252, 702
BstACI GRCGYC 1 cut(s) 691
BstC8I GCNNGC 4 cut(s) 562, 701, 740, 744
BstDSI CCRYGG 2 cut(s) 84, 694
BstEII GGTNACC 2 cut(s) 52, 79
BstF5I GGATG 3 cut(s) 303, 424, 795
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 240, 591
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 2 cut(s) 237, 588
BstMWI GCNNNNNNNGC 2 cut(s) 446, 822
BstNI CCWGG 1 cut(s) 606
BstPI GGTNACC 2 cut(s) 52, 79
BstSCI CCNGG 1 cut(s) 604
BstV1I GCAGC 2 cut(s) 505, 733
BstV2I GAAGAC 1 cut(s) 200
BsuRI GGCC 1 cut(s) 699
BtgI CCRYGG 2 cut(s) 84, 694
BtsCI GGATG 3 cut(s) 303, 424, 795
BtsIMutI CAGTG 2 cut(s) 216, 281
Cac8I GCNNGC 4 cut(s) 562, 701, 740, 744
CaiI CAGNNNCTG 1 cut(s) 449
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 35
CseI GACGC 1 cut(s) 699
CspAI ACCGGT 1 cut(s) 35
CviAII CATG 2 cut(s) 85, 695
DpnI GATC 2 cut(s) 239, 590
DpnII GATC 2 cut(s) 237, 588
EaeI YGGCCR 1 cut(s) 697
Eam1104I CTCTTC 2 cut(s) 252, 702
EarI CTCTTC 2 cut(s) 252, 702
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 5 cut(s) 84, 198, 624, 694, 720
Eco24I GRGCYC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 280
Eco32I GATATC 1 cut(s) 489
Eco47III AGCGCT 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 3 cut(s) 381, 426, 651
Eco91I GGTNACC 2 cut(s) 52, 79
EcoICRI GAGCTC 1 cut(s) 262
EcoO65I GGTNACC 2 cut(s) 52, 79
EcoRII CCWGG 1 cut(s) 604
EcoRV GATATC 1 cut(s) 489
EcoT14I CCWWGG 5 cut(s) 84, 198, 624, 694, 720
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 5 cut(s) 84, 198, 624, 694, 720
FaeI CATG 2 cut(s) 88, 698
FatI CATG 2 cut(s) 84, 694
Fnu4HI GCNGC 2 cut(s) 519, 747
FokI GGATG 3 cut(s) 290, 411, 802
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 519, 747
FspBI CTAG 2 cut(s) 128, 826
GlaI GCGC 1 cut(s) 179
GluI GCNGC 2 cut(s) 519, 747
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 1 cut(s) 699
HapII CCGG 3 cut(s) 36, 110, 704
HgaI GACGC 1 cut(s) 699
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 691
Hin1II CATG 2 cut(s) 88, 698
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HindIII AAGCTT 2 cut(s) 438, 808
HinfI GANTC 2 cut(s) 184, 395
HpaII CCGG 3 cut(s) 36, 110, 704
HphI GGTGA 2 cut(s) 46, 91
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 3 cut(s) 392, 444, 675
HpyCH4III ACNGT 3 cut(s) 285, 596, 796
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 4 cut(s) 134, 422, 602, 777
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 822
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 691
Hsp92II CATG 2 cut(s) 88, 698
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 237, 588
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 2 cut(s) 446, 530
Lsp1109I GCAGC 2 cut(s) 505, 733
LweI GCATC 1 cut(s) 645
MaeI CTAG 2 cut(s) 128, 826
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 3 cut(s) 52, 79, 214
MalI GATC 2 cut(s) 239, 590
MboI GATC 2 cut(s) 237, 588
MboII GAAGA 7 cut(s) 205, 269, 374, 462, 644, 708, 719
MfeI CAATTG 2 cut(s) 492, 542
MhlI GDGCHC 2 cut(s) 154, 264
MlsI TGGCCA 1 cut(s) 699
MluCI AATT 4 cut(s) 116, 492, 534, 542
MluNI TGGCCA 1 cut(s) 699
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 9 cut(s) 82, 106, 117, 438, 443, 655, 703, 760, 779
Mox20I TGGCCA 1 cut(s) 699
MroXI GAANNNNTTC 1 cut(s) 636
MscI TGGCCA 1 cut(s) 699
MseI TTAA 2 cut(s) 537, 669
MslI CAYNNNNRTG 2 cut(s) 147, 733
Msp20I TGGCCA 1 cut(s) 699
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 3 cut(s) 36, 110, 704
MspR9I CCNGG 1 cut(s) 606
MunI CAATTG 2 cut(s) 492, 542
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 2 cut(s) 446, 822
NcoI CCATGG 2 cut(s) 84, 694
NdeII GATC 2 cut(s) 237, 588
NlaIII CATG 2 cut(s) 88, 698
NlaIV GGNNCC 2 cut(s) 325, 385
NmuCI GTSAC 3 cut(s) 52, 79, 214
PciSI GCTCTTC 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 1 cut(s) 395
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 2 cut(s) 520, 748
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PsiI TTATAA 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 604
PspEI GGTNACC 2 cut(s) 52, 79
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 325, 385
PstNI CAGNNNCTG 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 359
RseI CAYNNNNRTG 2 cut(s) 147, 733
SacI GAGCTC 1 cut(s) 264
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 537, 669
SatI GCNGC 2 cut(s) 519, 747
Sau3AI GATC 2 cut(s) 237, 588
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 606
SduI GDGCHC 2 cut(s) 154, 264
SfaNI GCATC 1 cut(s) 645
SmiMI CAYNNNNRTG 2 cut(s) 147, 733
SmlI CTYRAG 2 cut(s) 181, 659
SmoI CTYRAG 2 cut(s) 181, 659
Sse9I AATT 4 cut(s) 116, 492, 534, 542
SspI AATATT 1 cut(s) 457
SspMI CTAG 2 cut(s) 128, 826
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 604
StyI CCWWGG 5 cut(s) 84, 198, 624, 694, 720
TaaI ACNGT 3 cut(s) 285, 596, 796
TaiI ACGT 1 cut(s) 321
TasI AATT 4 cut(s) 116, 492, 534, 542
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 2 cut(s) 537, 669
Tru9I TTAA 2 cut(s) 537, 669
TscAI CASTG 2 cut(s) 223, 288
TseFI GTSAC 3 cut(s) 52, 79, 214
TseI GCWGC 2 cut(s) 518, 746
Tsp45I GTSAC 3 cut(s) 52, 79, 214
TspDTI ATGAA 5 cut(s) 131, 174, 197, 360, 601
TspGWI ACGGA 1 cut(s) 798
TspRI CASTG 2 cut(s) 223, 288
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 2 cut(s) 128, 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.