Rw4G012330

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000208
Physical Location & Seq
Reverse (-)
29012643 .. 29014186
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G012330.1

Sequence Viewer

Length: 807 bp
ATGGCGAGAACAGATATCAATAGCAGAAACAGGAGATGGTCTCTTGAGGGGATGACTGCACTTGTCACCGGTGGAACCAAAGGGATTGGGTATGCTATTGTGGAAGAATTGGCTGGACTAGGGGCAAGCGTACATACTTGTGCTCGAAATGAAGTCCTACTCAATGACTGCTTGAGTCAATGGAAGTTGAAGGGTTTTCATAAAGTTACTGGTTCGATCTGTGATATGGTCTTAAAAACCCAACGTGAGGAGCTAATACACAGGGTCTCATTGCTGTTTAATGGGAAGCTTAACATCCTTATAAACAACGTGGGAACAAATATACCAAAACCAACAACCGAGTACGCAGCTGAAGATTACTCATTTATCATGAGTACCAATCTTGAATCCACATACCACTTGTGCCAACTTGCACATCCTCTTCTCAAAGATTCAGGAGCTGGTAACATAATTCTTTTGTCATCTGTTGCTGGTGTGGTATCACTTGGGAAGGTTGGGAGTATATATGCTGCCACTAAAGGAGCAATGAATCAATTGGCAAAAAACTTGGCGTGTGAATGGGCGAAAGATAAGATAAGGACCAACAGTGTTGCACCTTGGTTCATCAGAACTCCCCTCGCTGAACCTTATCTGAATGATGTAAAAACTTTGGAGGCCGTGAACTCTCGAACCCCTTTAGGACGGCCTGGAGAGCCAGAAGAGGTGTCTGCATTGGTAGCATTTTTGTGCCTCCCCGCAGCCTCTTACATAACTGGACAGACTATTTGCATCGACGGAGGGATGACTATCAATGGCTTTTCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

268

Amino Acids

28.98

Weight (kDa)

8.13

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 19 - 210 3.3e-42 short chain dehydrogenase
KR PF08659 19 - 182 9.5e-06 KR domain
adh_short_C2 PF13561 27 - 262 3.2e-52 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AciI CCGC 1 cut(s) 735
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 3 cut(s) 132, 344, 376
AfiI CCNNNNNNNGG 1 cut(s) 247
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 2 cut(s) 190, 386
AjnI CCWGG 1 cut(s) 685
AluBI AGCT 4 cut(s) 253, 289, 350, 440
AluI AGCT 4 cut(s) 253, 289, 350, 440
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 45, 271
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 2 cut(s) 654, 683
ApeKI GCWGC 3 cut(s) 347, 509, 737
ArsI GACNNNNNNTTYG 2 cut(s) 747, 779
AsiGI ACCGGT 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 579
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 3 cut(s) 359, 496, 749
BccI CCATC 1 cut(s) 30
BceAI ACGGC 2 cut(s) 641, 698
BciT130I CCWGG 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 45, 271
BfaI CTAG 2 cut(s) 119, 805
BisI GCNGC 3 cut(s) 348, 510, 738
BlsI GCNGC 3 cut(s) 349, 511, 739
Bme1390I CCNGG 1 cut(s) 687
Bme18I GGWCC 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 579
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 687
BmsI GCATC 1 cut(s) 777
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpmI CTGGAG 1 cut(s) 708
BpuEI CTTGAG 2 cut(s) 65, 193
BsaBI GATNNNNATC 1 cut(s) 785
BsaI GGTCTC 2 cut(s) 45, 271
BsaJI CCNNGG 1 cut(s) 596
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 214, 757
Bse3DI GCAATG 2 cut(s) 269, 531
Bse8I GATNNNNATC 1 cut(s) 785
BseBI CCWGG 1 cut(s) 687
BseDI CCNNGG 1 cut(s) 596
BseGI GGATG 4 cut(s) 57, 294, 415, 786
BseJI GATNNNNATC 1 cut(s) 785
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMI GCAATG 2 cut(s) 269, 531
BseNI ACTGG 2 cut(s) 214, 757
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 3 cut(s) 359, 496, 749
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 2 cut(s) 656, 685
BshTI ACCGGT 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 2 cut(s) 45, 271
BsnI GGCC 2 cut(s) 656, 685
Bso31I GGTCTC 2 cut(s) 45, 271
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 1 cut(s) 735
BspANI GGCC 2 cut(s) 656, 685
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 76
BspTNI GGTCTC 2 cut(s) 45, 271
BsrDI GCAATG 2 cut(s) 269, 531
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 214, 757
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 596
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 1 cut(s) 587
Bst6I CTCTTC 2 cut(s) 426, 693
BstC8I GCNNGC 1 cut(s) 127
BstF5I GGATG 4 cut(s) 57, 294, 415, 786
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 2 cut(s) 45, 271
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 2 cut(s) 691, 716
BstNI CCWGG 1 cut(s) 687
BstSCI CCNGG 1 cut(s) 685
BstV1I GCAGC 3 cut(s) 359, 496, 749
BsuRI GGCC 2 cut(s) 656, 685
BtsCI GGATG 4 cut(s) 57, 294, 415, 786
BtsIMutI CAGTG 1 cut(s) 592
Cac8I GCNNGC 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 440
CciI TCATGA 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 579
Csp6I GTAC 3 cut(s) 131, 343, 375
CspAI ACCGGT 1 cut(s) 68
CviAII CATG 1 cut(s) 370
CviQI GTAC 3 cut(s) 131, 343, 375
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 426, 693
EarI CTCTTC 2 cut(s) 426, 693
Eco130I CCWWGG 1 cut(s) 596
Eco31I GGTCTC 2 cut(s) 45, 271
Eco32I GATATC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 685
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 596
FaeI CATG 1 cut(s) 373
FatI CATG 1 cut(s) 369
FauI CCCGC 1 cut(s) 742
Fnu4HI GCNGC 3 cut(s) 348, 510, 738
FokI GGATG 4 cut(s) 64, 281, 402, 793
Fsp4HI GCNGC 3 cut(s) 348, 510, 738
FspBI CTAG 2 cut(s) 119, 805
GluI GCNGC 3 cut(s) 348, 510, 738
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 2 cut(s) 656, 685
HapII CCGG 1 cut(s) 69
Hin1II CATG 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 4 cut(s) 175, 386, 431, 529
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 661
Hpy188I TCNGA 2 cut(s) 608, 633
Hpy188III TCNNGA 5 cut(s) 44, 370, 383, 435, 666
Hpy8I GTNNAC 1 cut(s) 661
Hpy99I CGWCG 1 cut(s) 776
HpyAV CCTTC 2 cut(s) 184, 484
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4IV ACGT 2 cut(s) 244, 309
HpyCH4V TGCA 5 cut(s) 59, 413, 593, 710, 768
HpyF10VI GCNNNNNNNGC 2 cut(s) 691, 716
HpySE526I ACGT 2 cut(s) 244, 309
Hsp92II CATG 1 cut(s) 373
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 3 cut(s) 250, 437, 521
Lsp1109I GCAGC 3 cut(s) 359, 496, 749
LweI GCATC 1 cut(s) 777
MaeI CTAG 2 cut(s) 119, 805
MaeII ACGT 2 cut(s) 244, 309
MaeIII GTNAC 3 cut(s) 64, 205, 443
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 4 cut(s) 116, 365, 413, 710
MfeI CAATTG 1 cut(s) 533
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 3 cut(s) 107, 450, 533
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 9 cut(s) 40, 241, 429, 626, 646, 694, 740, 751, 770
MseI TTAA 3 cut(s) 233, 279, 291
MslI CAYNNNNRTG 2 cut(s) 138, 724
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 687
MunI CAATTG 1 cut(s) 533
MvaI CCWGG 1 cut(s) 687
MwoI GCNNNNNNNGC 2 cut(s) 691, 716
NdeII GATC 1 cut(s) 216
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 64
PagI TCATGA 1 cut(s) 369
PfeI GAWTC 3 cut(s) 386, 431, 529
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 3 cut(s) 349, 511, 739
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PsiI TTATAA 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 685
PspGI CCWGG 1 cut(s) 685
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 579
PstNI CAGNNNCTG 1 cut(s) 440
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 3 cut(s) 132, 344, 376
RsaNI GTAC 3 cut(s) 131, 343, 375
RseI CAYNNNNRTG 2 cut(s) 138, 724
SaqAI TTAA 3 cut(s) 233, 279, 291
SatI GCNGC 3 cut(s) 348, 510, 738
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 1 cut(s) 579
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 687
SduI GDGCHC 1 cut(s) 145
SfaNI GCATC 1 cut(s) 777
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 1 cut(s) 579
SmiMI CAYNNNNRTG 2 cut(s) 138, 724
SmlI CTYRAG 2 cut(s) 44, 172
SmoI CTYRAG 2 cut(s) 44, 172
Sse9I AATT 3 cut(s) 107, 450, 533
SsiI CCGC 1 cut(s) 735
SspMI CTAG 2 cut(s) 119, 805
StyD4I CCNGG 1 cut(s) 685
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 1 cut(s) 587
TaiI ACGT 2 cut(s) 247, 312
TaqI TCGA 4 cut(s) 145, 215, 667, 771
TasI AATT 3 cut(s) 107, 450, 533
TfiI GAWTC 3 cut(s) 386, 431, 529
Tru1I TTAA 3 cut(s) 233, 279, 291
Tru9I TTAA 3 cut(s) 233, 279, 291
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 347, 509, 737
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 5 cut(s) 165, 188, 542, 592, 789
TspGWI ACGGA 1 cut(s) 789
TspRI CASTG 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 579
XspI CTAG 2 cut(s) 119, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.