Rmu_sc0002589.1_g000024

Tropinone reductase homolog At1g07440-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002589.1
Physical Location & Seq
Reverse (-)
140383 .. 140903
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002589.1_g000024.1.cds

Sequence Viewer

Length: 255 bp
atggcgagaacagatatcaacagcagagacaggagatggtctcttgaggggatgactgcactcgtcaccggtggaaccaaagggattgggtatgctattgtggaggaactggctggactaggtgcgagtgtacatacttgttctcggaatgaagcccaactcaacgactgcttgagtcagtggaagaagaaggttttcatcaagtcactggttcagtctgtgatgtcgtctcaaaaggccaaagagaggagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.23

Weight (kDa)

9.62

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 246
AgeI ACCGGT 1 cut(s) 68
AluBI AGCT 1 cut(s) 252
AluI AGCT 1 cut(s) 252
Alw26I GTCTC 3 cut(s) 21, 45, 234
AoxI GGCC 1 cut(s) 237
AsiGI ACCGGT 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 58
BccI CCATC 1 cut(s) 30
BcoDI GTCTC 3 cut(s) 21, 45, 234
BfaI CTAG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpuEI CTTGAG 2 cut(s) 65, 193
BsaI GGTCTC 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 114, 213
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 246
BseNI ACTGG 2 cut(s) 114, 213
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 239
BshTI ACCGGT 1 cut(s) 68
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 3 cut(s) 21, 45, 234
BsmBI CGTCTC 1 cut(s) 234
BsnI GGCC 1 cut(s) 239
Bso31I GGTCTC 1 cut(s) 45
Bsp1407I TGTACA 1 cut(s) 130
BspANI GGCC 1 cut(s) 239
BspLI GGNNCC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 130
BsrI ACTGG 2 cut(s) 114, 213
BssAI RCCGGY 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 130
BstF5I GGATG 1 cut(s) 57
BstMAI GTCTC 3 cut(s) 21, 45, 234
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 185, 206
Cfr10I RCCGGY 1 cut(s) 68
Csp6I GTAC 1 cut(s) 131
CspAI ACCGGT 1 cut(s) 68
CviJI RGCY 4 cut(s) 113, 155, 239, 252
CviKI_1 RGCY 4 cut(s) 113, 155, 239, 252
CviQI GTAC 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 16
EcoRV GATATC 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 234
FaiI YATR 2 cut(s) 93, 135
FokI GGATG 1 cut(s) 64
FspBI CTAG 1 cut(s) 119
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 69
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 59
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 5 cut(s) 16, 82, 95, 99, 194
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 64, 204
MboII GAAGA 2 cut(s) 196, 199
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 3 cut(s) 40, 97, 240
MroXI GAANNNNTTC 1 cut(s) 194
MspI CCGG 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 64, 204
PdmI GAANNNNTTC 1 cut(s) 194
PinAI ACCGGT 1 cut(s) 68
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 76
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SchI GAGTC 1 cut(s) 184
SetI ASST 3 cut(s) 124, 195, 254
SgrAI CRCCGGYG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 44, 172
SmoI CTYRAG 2 cut(s) 44, 172
SspMI CTAG 1 cut(s) 119
TatI WGTACW 1 cut(s) 130
TscAI CASTG 2 cut(s) 185, 213
TseFI GTSAC 2 cut(s) 64, 204
Tsp45I GTSAC 2 cut(s) 64, 204
TspDTI ATGAA 2 cut(s) 165, 187
TspRI CASTG 2 cut(s) 185, 213
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.