MD04G1134700.v1.1

Tropinone reductase homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
22195734 .. 22196878
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1134700.v1.1.491

Sequence Viewer

Length: 405 bp
ATGTATACACACAAAATACATGGCAGGTTTCAAAAGCCAAGATGGTCTCTAGAGAGTACGACTGCTCTTGTCACTGGTGGAACTAAAGGCATCGGATATGCCATAATACAAGAGCTAGCAGGACTGGGAGCAACAGTGCATACCAGTGCCCGTAACGAAGCACAGATTGTTGAGAGGCTTCAAGAATGGGAAGATAAGAGGTTTAAAGTGACTGGCTCAGTTTGTGACCTCACCTTTAAAGCTCAAAGGGAAAACTTCATCAAAACTGTCTCCTCTATTTTCAATGGCAAGCTTAATATACTTACCTCAGGGGATGCAAGCGTTGTATTTGTCTCCTCCATTGGTGGAGCAGTGATCCAAATCTCTAAGAATTTAGCATGTGAATGGGCAAAAGAAACACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

14.7

Weight (kDa)

9.23

Isoelectric Point (pI)

25.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 21 - 102 4.7e-13 short chain dehydrogenase
adh_short_C2 PF13561 29 - 102 3e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 1 cut(s) 370
AfaI GTAC 1 cut(s) 58
AgsI TTSAA 3 cut(s) 32, 182, 283
AluBI AGCT 3 cut(s) 115, 242, 292
AluI AGCT 3 cut(s) 115, 242, 292
Alw26I GTCTC 3 cut(s) 51, 274, 337
AlwI GGATC 1 cut(s) 349
ApoI RAATTY 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 223
AsuNHI GCTAGC 1 cut(s) 115
AxyI CCTNAGG 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 151
BccI CCATC 1 cut(s) 36
BcoDI GTCTC 3 cut(s) 51, 274, 337
BfaI CTAG 2 cut(s) 50, 116
BfmI CTRYAG 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 99, 304
BmtI GCTAGC 1 cut(s) 119
BmuI ACTGGG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bse1I ACTGG 4 cut(s) 79, 129, 144, 217
Bse21I CCTNAGG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 359
BseGI GGATG 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 359
BseMII CTCAG 2 cut(s) 231, 321
BseNI ACTGG 4 cut(s) 79, 129, 144, 217
BseRI GAGGAG 2 cut(s) 262, 325
BseSI GKGCMC 1 cut(s) 151
BsmAI GTCTC 3 cut(s) 51, 274, 337
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 354
BspCNI CTCAG 2 cut(s) 230, 320
BspMI ACCTGC 1 cut(s) 15
BspOI GCTAGC 1 cut(s) 119
BspPI GGATC 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 51
BsrI ACTGG 4 cut(s) 79, 129, 144, 217
BssMI GATC 1 cut(s) 354
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst4CI ACNGT 3 cut(s) 136, 268, 402
BstC8I GCNNGC 3 cut(s) 117, 290, 319
BstDEI CTNAG 3 cut(s) 217, 307, 366
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 1 cut(s) 357
BstMAI GTCTC 3 cut(s) 51, 274, 337
BstMBI GATC 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 381
BstSFI CTRYAG 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 151
BstZ17I GTATAC 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 307
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 5 cut(s) 72, 141, 151, 357, 398
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 3 cut(s) 117, 290, 319
Csp6I GTAC 1 cut(s) 57
CviAII CATG 2 cut(s) 20, 378
CviJI RGCY 6 cut(s) 37, 115, 178, 216, 242, 292
CviKI_1 RGCY 6 cut(s) 37, 115, 178, 216, 242, 292
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 3 cut(s) 217, 307, 366
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
DraI TTTAAA 2 cut(s) 205, 238
Eco31I GGTCTC 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 307
FaeI CATG 2 cut(s) 23, 381
FaiI YATR 7 cut(s) 6, 21, 99, 104, 141, 299, 379
FatI CATG 2 cut(s) 19, 377
FblI GTMKAC 1 cut(s) 5
FokI GGATG 1 cut(s) 326
FspBI CTAG 2 cut(s) 50, 116
Hin1II CATG 2 cut(s) 23, 381
HindIII AAGCTT 1 cut(s) 290
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 2 cut(s) 50, 182
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 3 cut(s) 136, 268, 402
HpyCH4V TGCA 2 cut(s) 139, 317
HpyF3I CTNAG 3 cut(s) 217, 307, 366
Hsp92II CATG 2 cut(s) 23, 381
Kzo9I GATC 1 cut(s) 354
LmnI GCTCC 2 cut(s) 128, 347
LpnPI CCDG 7 cut(s) 10, 60, 105, 110, 157, 198, 294
LweI GCATC 2 cut(s) 99, 304
MaeI CTAG 2 cut(s) 50, 116
MaeIII GTNAC 4 cut(s) 70, 152, 208, 224
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 1 cut(s) 370
MnlI CCTC 6 cut(s) 168, 192, 239, 283, 316, 346
MseI TTAA 3 cut(s) 204, 237, 294
MslI CAYNNNNRTG 2 cut(s) 144, 382
NdeII GATC 1 cut(s) 354
NheI GCTAGC 1 cut(s) 115
NlaIII CATG 2 cut(s) 23, 381
NmuCI GTSAC 3 cut(s) 70, 208, 224
NspI RCATGY 1 cut(s) 381
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 2 cut(s) 144, 382
SaqAI TTAA 3 cut(s) 204, 237, 294
Sau3AI GATC 1 cut(s) 354
SduI GDGCHC 1 cut(s) 151
SetI ASST 8 cut(s) 29, 117, 203, 231, 236, 244, 294, 308
SfaNI GCATC 2 cut(s) 99, 304
SfcI CTRYAG 1 cut(s) 401
SmiMI CAYNNNNRTG 2 cut(s) 144, 382
Sse9I AATT 1 cut(s) 370
SspMI CTAG 2 cut(s) 50, 116
TaaI ACNGT 3 cut(s) 136, 268, 402
TasI AATT 1 cut(s) 370
Tru1I TTAA 3 cut(s) 204, 237, 294
Tru9I TTAA 3 cut(s) 204, 237, 294
TscAI CASTG 5 cut(s) 79, 141, 151, 357, 405
TseFI GTSAC 3 cut(s) 70, 208, 224
Tsp45I GTSAC 3 cut(s) 70, 208, 224
TspDTI ATGAA 1 cut(s) 247
TspRI CASTG 5 cut(s) 79, 141, 151, 357, 405
XapI RAATTY 1 cut(s) 370
XbaI TCTAGA 1 cut(s) 49
XceI RCATGY 1 cut(s) 381
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 50, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.