Rh5CG342400

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000208
Physical Location & Seq
Forward (+)
39250965 .. 39252969
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG342400.1

Sequence Viewer

Length: 819 bp
ATGGCGAGAGCAGATTCTAGCATCAACAGCAGAGATAGGAGGTGGTCTCTTGAAGGAATGACTGCCCTCGTCACCGGTGGAACCAAAGGGATTGGGTATGCAATTGTGGAGGAACTGGCGGGGCTAGGTGCTAGTGTACATACTTGTTCTCGGAATGAAGCCCAACTCAATGAATGCTTGAGTCAATGGAAGAAGAAAGGTTTTCGTCAGGTCACTGGTTCAGTATGTGATGTGGTTTCAAAAATCCAGAGAGAGGAGCTAATACACGAGGTCTCATCACTGTTTCATGGAAAACTTAACATCTTTATAAACAATGTGGGAACTTTTAAAGGAAAGCCAACAACTGAGTACACGGCTGAAGATTACTCGTTCATCATGAGTACCAACCTTGAATCTACTTACAATATGTGCCAACTTGCACATCCTCTTCTGAAAGCTTCAGGAGCTGGTAACATTATTCTTCTGTCTTCTGTTTGTGGTGTGGTATCAATTGGGGAGGTTGGGAGTATATACGGTGCAACTAAAGGAGCAATGAATCAATTGGCCAAAAACTTGGCTTGTGAGTGGGCAAAAGACAAGATTAAAGTCAACAGTGTTGCTCCTTGGCTCATCAAAACTCCTCTTGTTGAACCTATTTTGAGTGACGAAAAGTTTATGGAGGCTGTCATCTCTCGAACCCCATTAGGACGTACCGGAGAGCCTGAAGAGGTGTCTTCATTGGTGGCATTTCTATGCCTTCCGGCAGCCTCTTACATAACAGGGCAAACTATTTGCGTCGATGGAGGGATGACTGTCAATGGCTTCATGTTCCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

272

Amino Acids

29.31

Weight (kDa)

6.44

Isoelectric Point (pI)

28.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 21 - 216 3.4e-45 short chain dehydrogenase
KR PF08659 21 - 184 1.5e-09 KR domain
adh_short_C2 PF13561 29 - 264 1.1e-58 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AciI CCGC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 543
AcuI CTGAAG 3 cut(s) 378, 423, 723
AfaI GTAC 4 cut(s) 138, 350, 382, 691
AfiI CCNNNNNNNGG 1 cut(s) 253
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 4 cut(s) 53, 240, 392, 629
AluBI AGCT 3 cut(s) 259, 437, 446
AluI AGCT 3 cut(s) 259, 437, 446
Alw26I GTCTC 2 cut(s) 51, 277
AlwNI CAGNNNCTG 1 cut(s) 446
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 1 cut(s) 743
AsiGI ACCGGT 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 64
BalI TGGCCA 1 cut(s) 545
BauI CACGAG 1 cut(s) 266
BbsI GAAGAC 2 cut(s) 459, 705
BbvI GCAGC 1 cut(s) 755
BccI CCATC 1 cut(s) 773
BceAI ACGGC 1 cut(s) 369
BcoDI GTCTC 2 cut(s) 51, 277
BfaI CTAG 3 cut(s) 18, 125, 132
BisI GCNGC 1 cut(s) 744
BlsI GCNGC 1 cut(s) 745
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 1 cut(s) 30
BpiI GAAGAC 2 cut(s) 459, 705
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpuEI CTTGAG 1 cut(s) 199
BsaI GGTCTC 2 cut(s) 51, 277
BsaJI CCNNGG 1 cut(s) 602
BsaWI WCCGGW 2 cut(s) 74, 692
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 120, 220
Bse3DI GCAATG 1 cut(s) 537
BseDI CCNNGG 1 cut(s) 602
BseGI GGATG 2 cut(s) 421, 792
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 120, 220
BseRI GAGGAG 2 cut(s) 269, 609
BseXI GCAGC 1 cut(s) 755
BshFI GGCC 1 cut(s) 545
BshTI ACCGGT 1 cut(s) 74
BsiSI CCGG 3 cut(s) 75, 693, 740
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 51, 277
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 1 cut(s) 545
Bso31I GGTCTC 2 cut(s) 51, 277
Bsp1407I TGTACA 1 cut(s) 136
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 1 cut(s) 337
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 82
BspTNI GGTCTC 2 cut(s) 51, 277
BsrDI GCAATG 1 cut(s) 537
BsrFI RCCGGY 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 2 cut(s) 120, 220
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 602
BssSI CACGAG 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 602
Bst2BI CACGAG 1 cut(s) 266
Bst4CI ACNGT 4 cut(s) 282, 515, 593, 793
Bst6I CTCTTC 2 cut(s) 432, 699
BstAUI TGTACA 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 421, 792
BstMAI GTCTC 2 cut(s) 51, 277
BstMWI GCNNNNNNNGC 2 cut(s) 27, 443
BstV1I GCAGC 1 cut(s) 755
BstV2I GAAGAC 2 cut(s) 459, 705
BstXI CCANNNNNNTGG 1 cut(s) 553
BsuRI GGCC 1 cut(s) 545
BtsCI GGATG 2 cut(s) 421, 792
BtsIMutI CAGTG 3 cut(s) 213, 278, 598
CaiI CAGNNNCTG 1 cut(s) 446
CciI TCATGA 1 cut(s) 375
Cfr10I RCCGGY 1 cut(s) 74
CseI GACGC 1 cut(s) 763
Csp6I GTAC 4 cut(s) 137, 349, 381, 690
CspAI ACCGGT 1 cut(s) 74
CviAII CATG 3 cut(s) 287, 376, 805
CviQI GTAC 4 cut(s) 137, 349, 381, 690
DdeI CTNAG 1 cut(s) 345
DraI TTTAAA 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 2 cut(s) 432, 699
EarI CTCTTC 2 cut(s) 432, 699
Eco130I CCWWGG 1 cut(s) 602
Eco31I GGTCTC 2 cut(s) 51, 277
Eco57I CTGAAG 3 cut(s) 378, 423, 723
EcoT14I CCWWGG 1 cut(s) 602
ErhI CCWWGG 1 cut(s) 602
FaeI CATG 3 cut(s) 290, 379, 808
FatI CATG 3 cut(s) 286, 375, 804
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 744
FokI GGATG 2 cut(s) 408, 799
Fsp4HI GCNGC 1 cut(s) 744
FspBI CTAG 3 cut(s) 18, 125, 132
GluI GCNGC 1 cut(s) 744
HaeIII GGCC 1 cut(s) 545
HapII CCGG 3 cut(s) 75, 693, 740
HgaI GACGC 1 cut(s) 763
Hin1II CATG 3 cut(s) 290, 379, 808
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 4 cut(s) 14, 181, 392, 535
HpaII CCGG 3 cut(s) 75, 693, 740
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 3 cut(s) 137, 351, 589
Hpy188I TCNGA 2 cut(s) 153, 432
Hpy188III TCNNGA 5 cut(s) 50, 247, 376, 441, 672
Hpy8I GTNNAC 3 cut(s) 137, 351, 589
Hpy99I CGWCG 1 cut(s) 779
HpyAV CCTTC 2 cut(s) 47, 746
HpyCH4III ACNGT 4 cut(s) 282, 515, 593, 793
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 3 cut(s) 101, 419, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 443
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 3 cut(s) 290, 379, 808
LmnI GCTCC 4 cut(s) 256, 443, 527, 604
Lsp1109I GCAGC 1 cut(s) 755
LweI GCATC 1 cut(s) 30
MaeI CTAG 3 cut(s) 18, 125, 132
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 4 cut(s) 70, 211, 449, 641
MboII GAAGA 8 cut(s) 202, 205, 371, 419, 452, 459, 705, 716
MfeI CAATTG 3 cut(s) 102, 489, 539
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 3 cut(s) 102, 489, 539
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 1 cut(s) 190
Mox20I TGGCCA 1 cut(s) 545
MscI TGGCCA 1 cut(s) 545
MseI TTAA 3 cut(s) 297, 327, 582
MslI CAYNNNNRTG 1 cut(s) 730
Msp20I TGGCCA 1 cut(s) 545
MspI CCGG 3 cut(s) 75, 693, 740
MunI CAATTG 3 cut(s) 102, 489, 539
Mva1269I GAATGC 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 27, 443
NlaIII CATG 3 cut(s) 290, 379, 808
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 3 cut(s) 70, 211, 641
PagI TCATGA 1 cut(s) 375
PctI GAATGC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 14, 392, 535
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 1 cut(s) 745
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PsiI TTATAA 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 446
RsaI GTAC 4 cut(s) 138, 350, 382, 691
RsaNI GTAC 4 cut(s) 137, 349, 381, 690
RseI CAYNNNNRTG 1 cut(s) 730
SaqAI TTAA 3 cut(s) 297, 327, 582
SatI GCNGC 1 cut(s) 744
SchI GAGTC 1 cut(s) 190
SfaNI GCATC 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 730
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 3 cut(s) 102, 489, 539
SsiI CCGC 1 cut(s) 119
SspMI CTAG 3 cut(s) 18, 125, 132
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 4 cut(s) 282, 515, 593, 793
TaiI ACGT 1 cut(s) 691
TaqI TCGA 2 cut(s) 673, 777
TasI AATT 3 cut(s) 102, 489, 539
TatI WGTACW 2 cut(s) 136, 348
TfiI GAWTC 3 cut(s) 14, 392, 535
Tru1I TTAA 3 cut(s) 297, 327, 582
Tru9I TTAA 3 cut(s) 297, 327, 582
TscAI CASTG 3 cut(s) 220, 285, 598
TseFI GTSAC 3 cut(s) 70, 211, 641
TseI GCWGC 1 cut(s) 743
Tsp45I GTSAC 3 cut(s) 70, 211, 641
TspDTI ATGAA 7 cut(s) 171, 186, 275, 361, 548, 705, 793
TspRI CASTG 3 cut(s) 220, 285, 598
XspI CTAG 3 cut(s) 18, 125, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.