Rh5DG326600

Tropinone reductase homolog At1g07440-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
42840641 .. 42841953
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG326600.1

Sequence Viewer

Length: 465 bp
ATGTTTGGCAATTTTAGGTATGCAATTGTGGAGGAACTGGCGGGGCTAGGTGCTAGTGTACATGCTTGTTCTCGGAATGAAGCCCAACTCAATGAATGCTTGAGTCAATGGAAGAAGAAAGGTTTTCGTCAGGTCACTGGTTCAGTATGTGATGTGGTTTCAAAAATCCAGAGAGAGGAGCTAATACACGAGGTCTCATCACTGTTTCATGGAAAACTTAACATCTTTATAAACAATGTGGGAACTTTTAAAGGAAAGCCAACAACTGAGTACACGGCTGAAGATTACTCATTCATCATGAGCACCAACCTTGAATCTACTTACAATATGTGCCAACTAGCACATCCTCTTCTGAAAGCTTCAGGAGCTGGTAACATTATTCTTCTGTCTTCTGTTTGTGGTGTGGTATCAATTGGGGAGGTTGGGAGTATATACGGTGCAACTAAAGGTACGCTTTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

16.71

Weight (kDa)

6.89

Isoelectric Point (pI)

27.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 7 - 152 4.5e-22 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 8 - 151 1.8e-25 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AciI CCGC 1 cut(s) 41
AcuI CTGAAG 2 cut(s) 300, 345
AfaI GTAC 3 cut(s) 60, 272, 451
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 2 cut(s) 162, 314
AluBI AGCT 3 cut(s) 181, 359, 368
AluI AGCT 3 cut(s) 181, 359, 368
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 199
AlwNI CAGNNNCTG 1 cut(s) 368
BauI CACGAG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 3 cut(s) 47, 54, 338
BpiI GAAGAC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 42, 142
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 42, 142
BseRI GAGGAG 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 305
Bsp1407I TGTACA 1 cut(s) 58
BspACI CCGC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 259
BspHI TCATGA 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 199
BsrGI TGTACA 1 cut(s) 58
BsrI ACTGG 2 cut(s) 42, 142
BssSI CACGAG 1 cut(s) 188
Bst2BI CACGAG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 204, 437
Bst6I CTCTTC 1 cut(s) 354
BstAUI TGTACA 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNSI RCATGY 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 381
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 135, 200
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 1 cut(s) 297
Csp6I GTAC 3 cut(s) 59, 271, 450
CviAII CATG 3 cut(s) 62, 209, 298
CviJI RGCY 7 cut(s) 46, 83, 181, 259, 278, 359, 368
CviKI_1 RGCY 7 cut(s) 46, 83, 181, 259, 278, 359, 368
CviQI GTAC 3 cut(s) 59, 271, 450
DdeI CTNAG 1 cut(s) 267
DraI TTTAAA 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 199
Eco57I CTGAAG 2 cut(s) 300, 345
FaeI CATG 3 cut(s) 65, 212, 301
FaiI YATR 9 cut(s) 21, 63, 148, 210, 230, 299, 329, 431, 433
FalI AAGNNNNNCTT 1 cut(s) 438
FatI CATG 3 cut(s) 61, 208, 297
FauI CCCGC 1 cut(s) 34
FokI GGATG 1 cut(s) 330
FspBI CTAG 3 cut(s) 47, 54, 338
Hin1II CATG 3 cut(s) 65, 212, 301
HindIII AAGCTT 1 cut(s) 357
HinfI GANTC 2 cut(s) 103, 314
Hpy166II GTNNAC 2 cut(s) 59, 273
Hpy188I TCNGA 2 cut(s) 75, 354
Hpy188III TCNNGA 3 cut(s) 169, 298, 363
Hpy8I GTNNAC 2 cut(s) 59, 273
HpyCH4III ACNGT 2 cut(s) 204, 437
HpyCH4V TGCA 2 cut(s) 23, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 3 cut(s) 65, 212, 301
LmnI GCTCC 2 cut(s) 178, 365
LpnPI CCDG 6 cut(s) 23, 116, 123, 182, 348, 354
MaeI CTAG 3 cut(s) 47, 54, 338
MaeIII GTNAC 2 cut(s) 133, 371
MboII GAAGA 6 cut(s) 124, 127, 293, 341, 374, 381
MfeI CAATTG 2 cut(s) 24, 411
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 3 cut(s) 10, 24, 411
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 5 cut(s) 25, 169, 184, 357, 412
MseI TTAA 2 cut(s) 219, 249
MunI CAATTG 2 cut(s) 24, 411
Mva1269I GAATGC 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 365
NlaIII CATG 3 cut(s) 65, 212, 301
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 65
PagI TCATGA 1 cut(s) 297
PctI GAATGC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 314
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PsiI TTATAA 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 368
RsaI GTAC 3 cut(s) 60, 272, 451
RsaNI GTAC 3 cut(s) 59, 271, 450
SaqAI TTAA 2 cut(s) 219, 249
SchI GAGTC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 3 cut(s) 10, 24, 411
SsiI CCGC 1 cut(s) 41
SspMI CTAG 3 cut(s) 47, 54, 338
TaaI ACNGT 2 cut(s) 204, 437
TasI AATT 3 cut(s) 10, 24, 411
TatI WGTACW 2 cut(s) 58, 270
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 2 cut(s) 219, 249
Tru9I TTAA 2 cut(s) 219, 249
TscAI CASTG 2 cut(s) 142, 207
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 4 cut(s) 93, 108, 197, 283
TspRI CASTG 2 cut(s) 142, 207
XceI RCATGY 1 cut(s) 65
XspI CTAG 3 cut(s) 47, 54, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.