Rmu_sc0001746.1_g000006

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001746.1
OG0000208
Physical Location & Seq
Reverse (-)
25788 .. 28759
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001746.1_g000006.1.cds

Sequence Viewer

Length: 924 bp
atggctcaatatggcggaggaagaagatggtctcttgaaggaatgactgctctcgtcactggtggaaccaaagggatcgggtatgcgattgttgaggaattggctggattaggtgcaagtgtacatacttgttcacggaatgaagcccagctcaatgaatgcttgaatcaatggaagaagaagggttttcatcaagtcactggttcagtgtgtgatgtggtctcaaaaatccagagagaggaactaatacagaaggtctcatcactgtttcatgggaaacttaatattcttataaacaacgtgggagctcaaataggaaagccaacaactgagtacacagctgaagactactcatttatcatgagtaccaatcttgaatctgcttacactatgtgccaactagcacatcctcttctaaaaacttcaggagctggtaacattatttttctgtcttctgttggtggtgtggtctcaatgggcgagggtacgagtgtatacggtgcaactaaaggagcaatgaatcaattggccaaaactttggcttgtgagtgggcaaaagacaagattaggattaatagtgttgcacctgcgctcatcagaactcctcttgttgaacctattttgggtgacgaaaagttaatggaggctatcatctctcgaaccccattaggacgtataggagagcctgaggaggtgtctgccttggtggcatttctatgccttcctgcagcctcatacataacagggcagactatttgcatcgatggagggataactggcaccgcctccgtccaccaccagcctagggctggcgcagtcgctatccatgacgccatggatggcgtccatcatggtgatggcaccccaggtgatattgtaatcgcccacttgcttcacatagcgttttcggacgctcaggcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

307

Amino Acids

32.4

Weight (kDa)

6.11

Isoelectric Point (pI)

25.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AarI CACCTGC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 595
AccB1I GGYRCC 2 cut(s) 779, 860
AccI GTMKAC 1 cut(s) 495
AciI CCGC 2 cut(s) 15, 783
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 528
AcuI CTGAAG 2 cut(s) 363, 408
AcyI GRCGYC 2 cut(s) 831, 843
AdeI CACNNNGTG 1 cut(s) 393
AfaI GTAC 4 cut(s) 123, 335, 367, 487
AfiI CCNNNNNNNGG 4 cut(s) 238, 623, 805, 809
AgsI TTSAA 4 cut(s) 38, 166, 377, 614
AjnI CCWGG 1 cut(s) 865
AluBI AGCT 4 cut(s) 151, 308, 341, 431
AluI AGCT 4 cut(s) 151, 308, 341, 431
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 4 cut(s) 36, 226, 262, 475
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 2 cut(s) 528, 918
ApeKI GCWGC 1 cut(s) 728
AseI ATTAAT 1 cut(s) 573
AspA2I CCTAGG 1 cut(s) 803
AspLEI GCGC 2 cut(s) 592, 815
AsuHPI GGTGA 3 cut(s) 638, 866, 881
AvrII CCTAGG 1 cut(s) 803
AxyI CCTNAGG 1 cut(s) 687
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BalI TGGCCA 1 cut(s) 530
BanI GGYRCC 2 cut(s) 779, 860
BanII GRGCYC 1 cut(s) 310
BbsI GAAGAC 2 cut(s) 351, 444
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 1 cut(s) 740
BccI CCATC 5 cut(s) 21, 758, 833, 851, 855
BciT130I CCWGG 1 cut(s) 867
BcoDI GTCTC 4 cut(s) 36, 226, 262, 475
BfaI CTAG 2 cut(s) 401, 804
BfmI CTRYAG 1 cut(s) 726
BfuAI ACCTGC 1 cut(s) 595
BglI GCCNNNNNGGC 1 cut(s) 707
BisI GCNGC 1 cut(s) 729
BlnI CCTAGG 1 cut(s) 803
BlsI GCNGC 1 cut(s) 730
Bme1390I CCNGG 1 cut(s) 867
BmiI GGNNCC 3 cut(s) 67, 781, 862
BmrFI CCNGG 1 cut(s) 867
BmsI GCATC 1 cut(s) 768
BpiI GAAGAC 2 cut(s) 351, 444
Bpu10I CCTNAGC 1 cut(s) 915
Bsa29I ATCGAT 1 cut(s) 762
BsaHI GRCGYC 2 cut(s) 831, 843
BsaI GGTCTC 4 cut(s) 36, 226, 262, 475
BsaJI CCNNGG 4 cut(s) 702, 803, 834, 865
Bsc4I CCNNNNNNNGG 4 cut(s) 238, 623, 805, 809
Bse1I ACTGG 3 cut(s) 64, 205, 781
Bse21I CCTNAGG 1 cut(s) 687
Bse3DI GCAATG 1 cut(s) 522
BseBI CCWGG 1 cut(s) 867
BseCI ATCGAT 1 cut(s) 762
BseDI CCNNGG 4 cut(s) 702, 803, 834, 865
BseGI GGATG 2 cut(s) 406, 844
BseLI CCNNNNNNNGG 4 cut(s) 238, 623, 805, 809
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 2 cut(s) 321, 678
BseNI ACTGG 3 cut(s) 64, 205, 781
BseRI GAGGAG 2 cut(s) 594, 704
BseXI GCAGC 1 cut(s) 740
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 2 cut(s) 530, 920
BshNI GGYRCC 2 cut(s) 779, 860
BshVI ATCGAT 1 cut(s) 762
BsiHKAI GWGCWC 1 cut(s) 310
BslI CCNNNNNNNGG 4 cut(s) 238, 623, 805, 809
BsmAI GTCTC 4 cut(s) 36, 226, 262, 475
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 2 cut(s) 530, 920
Bso31I GGTCTC 4 cut(s) 36, 226, 262, 475
Bsp1286I GDGCHC 1 cut(s) 310
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 834
BspACI CCGC 2 cut(s) 15, 783
BspANI GGCC 2 cut(s) 530, 920
BspCNI CTCAG 2 cut(s) 322, 679
BspDI ATCGAT 1 cut(s) 762
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 3 cut(s) 67, 781, 862
BspMAI CTGCAG 1 cut(s) 730
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 1 cut(s) 83
BspT107I GGYRCC 2 cut(s) 779, 860
BspTNI GGTCTC 4 cut(s) 36, 226, 262, 475
BsrDI GCAATG 1 cut(s) 522
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 3 cut(s) 64, 205, 781
BssECI CCNNGG 4 cut(s) 702, 803, 834, 865
BssMI GATC 1 cut(s) 75
BssNAI GTATAC 1 cut(s) 496
BssNI GRCGYC 2 cut(s) 831, 843
BssT1I CCWWGG 3 cut(s) 702, 803, 834
Bst1107I GTATAC 1 cut(s) 496
Bst2UI CCWGG 1 cut(s) 867
Bst4CI ACNGT 2 cut(s) 267, 500
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 2 cut(s) 831, 843
BstAUI TGTACA 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 811
BstDEI CTNAG 3 cut(s) 330, 687, 915
BstDSI CCRYGG 1 cut(s) 834
BstF5I GGATG 2 cut(s) 406, 844
BstHHI GCGC 2 cut(s) 592, 815
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 4 cut(s) 36, 226, 262, 475
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 707
BstNI CCWGG 1 cut(s) 867
BstSCI CCNGG 1 cut(s) 865
BstSFI CTRYAG 1 cut(s) 726
BstV1I GCAGC 1 cut(s) 740
BstV2I GAAGAC 2 cut(s) 351, 444
BstXI CCANNNNNNTGG 1 cut(s) 538
BstZ17I GTATAC 1 cut(s) 496
Bsu15I ATCGAT 1 cut(s) 762
Bsu36I CCTNAGG 1 cut(s) 687
BsuRI GGCC 2 cut(s) 530, 920
BsuTUI ATCGAT 1 cut(s) 762
BtgI CCRYGG 1 cut(s) 834
BtsCI GGATG 2 cut(s) 406, 844
BtsIMutI CAGTG 4 cut(s) 57, 198, 213, 263
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 1 cut(s) 811
CaiI CAGNNNCTG 1 cut(s) 431
CciI TCATGA 1 cut(s) 360
CfoI GCGC 2 cut(s) 592, 815
ClaI ATCGAT 1 cut(s) 762
CseI GACGC 2 cut(s) 832, 839
Csp6I GTAC 4 cut(s) 122, 334, 366, 486
CviAII CATG 5 cut(s) 272, 361, 827, 835, 851
CviQI GTAC 4 cut(s) 122, 334, 366, 486
DdeI CTNAG 3 cut(s) 330, 687, 915
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
DraIII CACNNNGTG 1 cut(s) 393
EaeI YGGCCR 1 cut(s) 528
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
EciI GGCGGA 1 cut(s) 30
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 3 cut(s) 702, 803, 834
Eco147I AGGCCT 1 cut(s) 920
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 4 cut(s) 36, 226, 262, 475
Eco53kI GAGCTC 1 cut(s) 308
Eco57I CTGAAG 2 cut(s) 363, 408
Eco81I CCTNAGG 1 cut(s) 687
EcoICRI GAGCTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 865
EcoT14I CCWWGG 3 cut(s) 702, 803, 834
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 3 cut(s) 702, 803, 834
FaeI CATG 5 cut(s) 275, 364, 830, 838, 854
FatI CATG 5 cut(s) 271, 360, 826, 834, 850
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 1 cut(s) 729
FokI GGATG 2 cut(s) 393, 851
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 729
FspBI CTAG 2 cut(s) 401, 804
GlaI GCGC 2 cut(s) 591, 814
GluI GCNGC 1 cut(s) 729
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 2 cut(s) 530, 920
HgaI GACGC 2 cut(s) 832, 839
HhaI GCGC 2 cut(s) 592, 815
Hin1I GRCGYC 2 cut(s) 831, 843
Hin1II CATG 5 cut(s) 275, 364, 830, 838, 854
Hin6I GCGC 2 cut(s) 590, 813
HinP1I GCGC 2 cut(s) 590, 813
HinfI GANTC 3 cut(s) 166, 377, 520
HphI GGTGA 3 cut(s) 638, 866, 881
Hpy166II GTNNAC 5 cut(s) 122, 134, 336, 496, 793
Hpy188I TCNGA 2 cut(s) 599, 910
Hpy188III TCNNGA 6 cut(s) 35, 232, 361, 374, 426, 657
Hpy8I GTNNAC 5 cut(s) 122, 134, 336, 496, 793
HpyAV CCTTC 4 cut(s) 32, 175, 247, 731
HpyCH4III ACNGT 2 cut(s) 267, 500
HpyCH4IV ACGT 2 cut(s) 300, 673
HpyCH4V TGCA 5 cut(s) 116, 503, 584, 728, 759
HpyF10VI GCNNNNNNNGC 1 cut(s) 707
HpyF3I CTNAG 3 cut(s) 330, 687, 915
HpySE526I ACGT 2 cut(s) 300, 673
Hsp92I GRCGYC 2 cut(s) 831, 843
Hsp92II CATG 5 cut(s) 275, 364, 830, 838, 854
HspAI GCGC 2 cut(s) 590, 813
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 3 cut(s) 305, 428, 512
Lsp1109I GCAGC 1 cut(s) 740
LweI GCATC 1 cut(s) 768
MaeI CTAG 2 cut(s) 401, 804
MaeII ACGT 2 cut(s) 300, 673
MaeIII GTNAC 4 cut(s) 55, 196, 434, 626
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 7 cut(s) 33, 36, 187, 190, 356, 404, 444
MfeI CAATTG 1 cut(s) 524
MhlI GDGCHC 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 2 cut(s) 98, 524
MluNI TGGCCA 1 cut(s) 530
Mox20I TGGCCA 1 cut(s) 530
MscI TGGCCA 1 cut(s) 530
MseI TTAA 3 cut(s) 282, 573, 638
MslI CAYNNNNRTG 3 cut(s) 715, 852, 855
Msp20I TGGCCA 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 867
MunI CAATTG 1 cut(s) 524
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 1 cut(s) 867
MwoI GCNNNNNNNGC 1 cut(s) 707
NcoI CCATGG 1 cut(s) 834
NdeII GATC 1 cut(s) 75
NlaIII CATG 5 cut(s) 275, 364, 830, 838, 854
NlaIV GGNNCC 3 cut(s) 67, 781, 862
NmuCI GTSAC 3 cut(s) 55, 196, 626
PagI TCATGA 1 cut(s) 360
PaqCI CACCTGC 1 cut(s) 595
PceI AGGCCT 1 cut(s) 920
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 3 cut(s) 166, 377, 520
PkrI GCNGC 1 cut(s) 730
PshBI ATTAAT 1 cut(s) 573
PsiI TTATAA 1 cut(s) 293
Psp124BI GAGCTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 865
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 1 cut(s) 865
PspN4I GGNNCC 3 cut(s) 67, 781, 862
PstI CTGCAG 1 cut(s) 730
PstNI CAGNNNCTG 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 4 cut(s) 123, 335, 367, 487
RsaNI GTAC 4 cut(s) 122, 334, 366, 486
RseI CAYNNNNRTG 3 cut(s) 715, 852, 855
SacI GAGCTC 1 cut(s) 310
SaqAI TTAA 3 cut(s) 282, 573, 638
SatI GCNGC 1 cut(s) 729
Sau3AI GATC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 867
SduI GDGCHC 1 cut(s) 310
SfaNI GCATC 1 cut(s) 768
SfcI CTRYAG 1 cut(s) 726
SmiMI CAYNNNNRTG 3 cut(s) 715, 852, 855
Sse9I AATT 2 cut(s) 98, 524
SseBI AGGCCT 1 cut(s) 920
SsiI CCGC 2 cut(s) 15, 783
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 401, 804
SstI GAGCTC 1 cut(s) 310
StuI AGGCCT 1 cut(s) 920
StyD4I CCNGG 1 cut(s) 865
StyI CCWWGG 3 cut(s) 702, 803, 834
TaaI ACNGT 2 cut(s) 267, 500
TaiI ACGT 2 cut(s) 303, 676
TaqI TCGA 2 cut(s) 658, 762
TasI AATT 2 cut(s) 98, 524
TatI WGTACW 2 cut(s) 121, 333
TfiI GAWTC 3 cut(s) 166, 377, 520
Tru1I TTAA 3 cut(s) 282, 573, 638
Tru9I TTAA 3 cut(s) 282, 573, 638
TscAI CASTG 4 cut(s) 64, 205, 213, 270
TseFI GTSAC 3 cut(s) 55, 196, 626
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 3 cut(s) 55, 196, 626
TspDTI ATGAA 5 cut(s) 156, 171, 179, 260, 533
TspGWI ACGGA 2 cut(s) 151, 778
TspRI CASTG 4 cut(s) 64, 205, 213, 270
VspI ATTAAT 1 cut(s) 573
XcmI CCANNNNNNNNNTGG 2 cut(s) 806, 854
XmaJI CCTAGG 1 cut(s) 803
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 2 cut(s) 401, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.