Prupe.6G069000_v2.0.a1

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000208
Physical Location & Seq
Reverse (-)
4739007 .. 4741640
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G069000.1

Sequence Viewer

Length: 816 bp
ATGGCGCAGGCAAATAGCAATGGCAAAGATAGTAGATGGTCTCTTCACGGAATGACTGCACTTGTCACTGGTGGAACCAAAGGAATTGGGTACGCTATTGTGGAGGAATTGGCGGGGCTAGGTGCAACTATACATACTTGTTCTCGTAATGAAGTTCAGCTTAACGACTGCTTGAGCCAATGGAAAATGAAGGGTTTTGATCAAGTAACTGGTTCGGTATGTGATGTGGTCTCAAAAGCTCAACGAGAGGAGCTTATAAACAAGGTCTCATCACTATTTCACGGCAAACTTAACATCCTTATAAACAACGTGGGAACTACCGACCTAAAACCAGCAATCGAGAGCACAACTGAAGATTACTCATTTATTATGAGTACCAATCTTGAATCTGCTTACCATTTTTCCCAACTTGCGCATCCTCTTTTGAAAGCTTCAGGAGCTGGTAACATTATTTTTTTGTCTTCTGTTGCTGGCGTTGTATCAGTTGGGGAGGGTGGAAGTATATATGCTGCCACAAAAGGAGCAATTAACCAGTTGGCAAAAAACTTAGCATGTGAGTGGGCAAAAGACAACATAAGGACCAACAGTGTTGCACCTTGGTTCATCCGAACTCCCCTCGTTGAGCCTCTTCTGAGTAACCAAAATTTTTTGGAGGCTGTCAACTCTCGATGCCCTTTAGGACGGACTGGAGAGCCAAAAGAGGTGTCCGCCTTGGTGGCATTTCTATGCTTCCCTGCAGCGTCTTACATAACTGGCCAAACTATCTGCGTCGATGGAGGGTTCACTGTCAATGGCCTCCTCTTCCAAGGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

272

Amino Acids

28.85

Weight (kDa)

6.21

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 257, 302
Acc16I TGCGCA 1 cut(s) 414
AciI CCGC 2 cut(s) 113, 708
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 1 cut(s) 643
AcuI CTGAAG 2 cut(s) 372, 417
AfaI GTAC 2 cut(s) 92, 376
AgsI TTSAA 2 cut(s) 386, 427
AluBI AGCT 5 cut(s) 160, 239, 253, 431, 440
AluI AGCT 5 cut(s) 160, 239, 253, 431, 440
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 3 cut(s) 45, 235, 271
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 2 cut(s) 754, 793
ApeKI GCWGC 2 cut(s) 509, 737
ApoI RAATTY 1 cut(s) 643
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
AspLEI GCGC 2 cut(s) 7, 415
AspS9I GGNCC 2 cut(s) 579, 809
AvaII GGWCC 2 cut(s) 579, 809
BalI TGGCCA 1 cut(s) 756
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 2 cut(s) 496, 749
BccI CCATC 2 cut(s) 30, 767
BceAI ACGGC 1 cut(s) 298
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 3 cut(s) 45, 235, 271
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 735
BglI GCCNNNNNGGC 1 cut(s) 716
BisI GCNGC 2 cut(s) 510, 738
BlsI GCNGC 2 cut(s) 511, 739
Bme18I GGWCC 2 cut(s) 579, 809
BmgT120I GGNCC 2 cut(s) 579, 809
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 2 cut(s) 424, 659
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 193
BsaI GGTCTC 3 cut(s) 45, 235, 271
BsaJI CCNNGG 3 cut(s) 596, 711, 805
Bse1I ACTGG 5 cut(s) 73, 214, 532, 691, 757
Bse3DI GCAATG 1 cut(s) 25
BseDI CCNNGG 3 cut(s) 596, 711, 805
BseGI GGATG 3 cut(s) 294, 415, 603
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 5 cut(s) 73, 214, 532, 691, 757
BseRI GAGGAG 2 cut(s) 263, 788
BseXI GCAGC 2 cut(s) 496, 749
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 2 cut(s) 756, 795
BsiHKAI GWGCWC 1 cut(s) 347
BsmAI GTCTC 3 cut(s) 45, 235, 271
BsnI GGCC 2 cut(s) 756, 795
Bso31I GGTCTC 3 cut(s) 45, 235, 271
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 2 cut(s) 113, 708
BspANI GGCC 2 cut(s) 756, 795
BspCNI CTCAG 1 cut(s) 624
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 739
BspTNI GGTCTC 3 cut(s) 45, 235, 271
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 5 cut(s) 73, 214, 532, 691, 757
BssECI CCNNGG 3 cut(s) 596, 711, 805
BssMI GATC 1 cut(s) 199
BssT1I CCWWGG 3 cut(s) 596, 711, 805
Bst4CI ACNGT 2 cut(s) 587, 787
Bst6I CTCTTC 3 cut(s) 48, 633, 806
BstC8I GCNNGC 2 cut(s) 9, 472
BstDEI CTNAG 2 cut(s) 547, 632
BstF5I GGATG 3 cut(s) 294, 415, 603
BstHHI GCGC 2 cut(s) 7, 415
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 3 cut(s) 45, 235, 271
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 437, 716
BstNSI RCATGY 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 735
BstV1I GCAGC 2 cut(s) 496, 749
BstV2I GAAGAC 1 cut(s) 453
BsuRI GGCC 2 cut(s) 756, 795
BtsCI GGATG 3 cut(s) 294, 415, 603
BtsIMutI CAGTG 3 cut(s) 66, 592, 783
Cac8I GCNNGC 2 cut(s) 9, 472
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 2 cut(s) 7, 415
Cfr13I GGNCC 2 cut(s) 579, 809
CseI GACGC 2 cut(s) 729, 757
Csp6I GTAC 2 cut(s) 91, 375
CviAII CATG 2 cut(s) 552, 813
CviQI GTAC 2 cut(s) 91, 375
DdeI CTNAG 2 cut(s) 547, 632
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 3 cut(s) 48, 633, 806
EarI CTCTTC 3 cut(s) 48, 633, 806
EciI GGCGGA 1 cut(s) 697
Eco130I CCWWGG 3 cut(s) 596, 711, 805
Eco31I GGTCTC 3 cut(s) 45, 235, 271
Eco47I GGWCC 2 cut(s) 579, 809
Eco57I CTGAAG 2 cut(s) 372, 417
EcoT14I CCWWGG 3 cut(s) 596, 711, 805
ErhI CCWWGG 3 cut(s) 596, 711, 805
FaeI CATG 2 cut(s) 555, 816
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 2 cut(s) 551, 812
FauI CCCGC 1 cut(s) 106
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 510, 738
FokI GGATG 3 cut(s) 281, 402, 590
Fsp4HI GCNGC 2 cut(s) 510, 738
FspBI CTAG 1 cut(s) 119
FspI TGCGCA 1 cut(s) 414
GlaI GCGC 2 cut(s) 6, 414
GluI GCNGC 2 cut(s) 510, 738
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 2 cut(s) 756, 795
HgaI GACGC 2 cut(s) 729, 757
HhaI GCGC 2 cut(s) 7, 415
Hin1II CATG 2 cut(s) 555, 816
Hin6I GCGC 2 cut(s) 5, 413
HinP1I GCGC 2 cut(s) 5, 413
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 1 cut(s) 386
Hpy166II GTNNAC 2 cut(s) 661, 783
Hpy188I TCNGA 2 cut(s) 608, 633
Hpy188III TCNNGA 4 cut(s) 340, 383, 435, 666
Hpy8I GTNNAC 2 cut(s) 661, 783
Hpy99I CGWCG 1 cut(s) 773
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 587, 787
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 4 cut(s) 59, 125, 593, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 716
HpyF3I CTNAG 2 cut(s) 547, 632
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 2 cut(s) 555, 816
HspAI GCGC 2 cut(s) 5, 413
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 3 cut(s) 250, 437, 521
Lsp1109I GCAGC 2 cut(s) 496, 749
LweI GCATC 2 cut(s) 424, 659
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 4 cut(s) 64, 205, 443, 635
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 5 cut(s) 35, 365, 453, 620, 793
MhlI GDGCHC 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 4 cut(s) 84, 107, 525, 643
MluNI TGGCCA 1 cut(s) 756
Mox20I TGGCCA 1 cut(s) 756
MscI TGGCCA 1 cut(s) 756
MseI TTAA 3 cut(s) 162, 291, 528
MslI CAYNNNNRTG 2 cut(s) 556, 724
Msp20I TGGCCA 1 cut(s) 756
MwoI GCNNNNNNNGC 2 cut(s) 437, 716
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 555, 816
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 64
NsbI TGCGCA 1 cut(s) 414
NspI RCATGY 1 cut(s) 555
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 2 cut(s) 511, 739
PsiI TTATAA 2 cut(s) 257, 302
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 579, 809
PstI CTGCAG 1 cut(s) 739
PstNI CAGNNNCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 92, 376
RsaNI GTAC 2 cut(s) 91, 375
RseI CAYNNNNRTG 2 cut(s) 556, 724
SaqAI TTAA 3 cut(s) 162, 291, 528
SatI GCNGC 2 cut(s) 510, 738
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 2 cut(s) 579, 809
SduI GDGCHC 1 cut(s) 347
SfaNI GCATC 2 cut(s) 424, 659
SfcI CTRYAG 1 cut(s) 735
SinI GGWCC 2 cut(s) 579, 809
SmiMI CAYNNNNRTG 2 cut(s) 556, 724
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 4 cut(s) 84, 107, 525, 643
SsiI CCGC 2 cut(s) 113, 708
SspMI CTAG 1 cut(s) 119
StyI CCWWGG 3 cut(s) 596, 711, 805
TaaI ACNGT 2 cut(s) 587, 787
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 339, 667, 771
TasI AATT 4 cut(s) 84, 107, 525, 643
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 3 cut(s) 162, 291, 528
Tru9I TTAA 3 cut(s) 162, 291, 528
TscAI CASTG 3 cut(s) 73, 592, 790
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 509, 737
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 165, 203, 592
TspGWI ACGGA 2 cut(s) 63, 697
TspRI CASTG 3 cut(s) 73, 592, 790
VpaK11BI GGWCC 2 cut(s) 579, 809
XapI RAATTY 1 cut(s) 643
XceI RCATGY 1 cut(s) 555
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.