RLG00000008646

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000208
Physical Location & Seq
Forward (+)
34040930 .. 34042396
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008646

Sequence Viewer

Length: 600 bp
ATGGCTCAAGCAAATAATCCTATTAGCAGTGACAGCTCAGATAGAAGATGGTCTCTCGAGGGAATGACCGCTCTTGTCACGGGTGGAACCAAAGGCATCGGATATGCTATTGTGGAGGAATTGGCGAGGCTAGGTGCAAAGGTTCATACTTGTGCTCGGAATGAAGTCCAACTCAATGAGCGGTTGAGTCAATGGAAGACCAAGGGTTTTCATCAAGTCACTGGTTCTGTATGTGATTTGATCTCAAAGCCCCAACGAGAAGAGCTCATAAACAAGGTCTCATCACTGTTCAATGGAAAACTAAACATCCTTATAAACAACGTGGGAACCAATATACTAAAGCCCACAACTGATTACACAGCTGAAGATTATTCATTTCTTATGGGAACCAATCTTGAATCTTATTACAATATGTGCCAACTTGCATATCCTCTCCTCAAAGCTTCAGGAGCTGGTAATATTGTTCTTATATCTTCTATTGCTGGTGTGATATCAATTGGGGGTAGTGGAAGTATTCTCAATAACCAAACGATGCTTGAGACTATTTGCATTGACGGAGGGATGACTGTTGAGGGCATAAGCTTACGCTTTCAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

200

Amino Acids

21.43

Weight (kDa)

6.12

Isoelectric Point (pI)

29.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 23 - 165 1.3e-31 short chain dehydrogenase
KR PF08659 23 - 170 6.3e-07 KR domain
adh_short_C2 PF13561 31 - 168 1.1e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AccBSI CCGCTC 2 cut(s) 71, 181
AciI CCGC 2 cut(s) 69, 181
AcuI CTGAAG 2 cut(s) 384, 429
AgsI TTSAA 3 cut(s) 292, 398, 593
AluBI AGCT 6 cut(s) 36, 265, 362, 443, 452, 582
AluI AGCT 6 cut(s) 36, 265, 362, 443, 452, 582
Alw21I GWGCWC 2 cut(s) 157, 267
Alw26I GTCTC 3 cut(s) 57, 283, 533
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 56
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 2 cut(s) 157, 267
BccI CCATC 1 cut(s) 42
BcoDI GTCTC 3 cut(s) 57, 283, 533
BfaI CTAG 2 cut(s) 131, 598
BmeT110I CYCGRG 1 cut(s) 56
BmiI GGNNCC 3 cut(s) 88, 328, 388
BmsI GCATC 2 cut(s) 105, 522
BpiI GAAGAC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BpuEI CTTGAG 1 cut(s) 557
BsaI GGTCTC 2 cut(s) 57, 283
BsaJI CCNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 306, 567
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 425
BsiHKAI GWGCWC 2 cut(s) 157, 267
BsiHKCI CYCGRG 1 cut(s) 56
BsmAI GTCTC 3 cut(s) 57, 283, 533
Bso31I GGTCTC 2 cut(s) 57, 283
BsoBI CYCGRG 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 157, 267
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 2 cut(s) 69, 181
BspCNI CTCAG 1 cut(s) 50
BspLI GGNNCC 3 cut(s) 88, 328, 388
BspQI GCTCTTC 1 cut(s) 255
BspTNI GGTCTC 2 cut(s) 57, 283
BsrBI CCGCTC 2 cut(s) 71, 181
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 288, 568
Bst6I CTCTTC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 37
BstF5I GGATG 2 cut(s) 306, 567
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 3 cut(s) 57, 283, 533
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 3 cut(s) 33, 449, 594
BstV2I GAAGAC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 306, 567
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 3 cut(s) 34, 219, 284
CaiI CAGNNNCTG 1 cut(s) 452
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 267
Eco31I GGTCTC 2 cut(s) 57, 283
Eco32I GATATC 1 cut(s) 492
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 384, 429
Eco88I CYCGRG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 265
EcoRV GATATC 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 201
FokI GGATG 2 cut(s) 293, 574
FriOI GRGCYC 1 cut(s) 267
FspBI CTAG 2 cut(s) 131, 598
HindIII AAGCTT 2 cut(s) 441, 580
HinfI GANTC 2 cut(s) 187, 398
Hpy188I TCNGA 3 cut(s) 40, 101, 159
Hpy188III TCNNGA 3 cut(s) 56, 395, 447
HpyCH4III ACNGT 2 cut(s) 288, 568
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 137, 425, 549
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 449, 594
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 321
Kzo9I GATC 1 cut(s) 240
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 449
LpnPI CCDG 4 cut(s) 207, 432, 438, 468
LweI GCATC 2 cut(s) 105, 522
MaeI CTAG 2 cut(s) 131, 598
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 3 cut(s) 29, 76, 217
MalI GATC 1 cut(s) 242
MbiI CCGCTC 2 cut(s) 71, 181
MboI GATC 1 cut(s) 240
MboII GAAGA 5 cut(s) 57, 208, 272, 377, 465
MfeI CAATTG 1 cut(s) 495
MhlI GDGCHC 2 cut(s) 157, 267
MluCI AATT 2 cut(s) 119, 495
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 7 cut(s) 52, 109, 120, 441, 446, 551, 565
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 362
MunI CAATTG 1 cut(s) 495
MwoI GCNNNNNNNGC 3 cut(s) 33, 449, 594
NdeII GATC 1 cut(s) 240
NlaIV GGNNCC 3 cut(s) 88, 328, 388
NmuCI GTSAC 3 cut(s) 29, 76, 217
PaeR7I CTCGAG 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 398
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PsiI TTATAA 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 88, 328, 388
PstNI CAGNNNCTG 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 240
SchI GAGTC 1 cut(s) 196
SduI GDGCHC 2 cut(s) 157, 267
SfaNI GCATC 2 cut(s) 105, 522
Sfr274I CTCGAG 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 3 cut(s) 6, 56, 536
SmoI CTYRAG 3 cut(s) 6, 56, 536
Sse9I AATT 2 cut(s) 119, 495
SsiI CCGC 2 cut(s) 69, 181
SspI AATATT 1 cut(s) 460
SspMI CTAG 2 cut(s) 131, 598
SstI GAGCTC 1 cut(s) 267
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 288, 568
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 57
TasI AATT 2 cut(s) 119, 495
TfiI GAWTC 1 cut(s) 398
TscAI CASTG 3 cut(s) 34, 226, 291
TseFI GTSAC 3 cut(s) 29, 76, 217
Tsp45I GTSAC 3 cut(s) 29, 76, 217
TspDTI ATGAA 4 cut(s) 134, 177, 200, 363
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 3 cut(s) 34, 226, 291
XhoI CTCGAG 1 cut(s) 56
XspI CTAG 2 cut(s) 131, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.