MD11G1093700.v1.1

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000208
Physical Location & Seq
Reverse (-)
7791452 .. 7796629
5178 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1093700.v1.1.491

Sequence Viewer

Length: 882 bp
ATGGCTGATCATAAAATTAATTTTCTGGATTACTGGACGGCATATCTCTATCAATGCTCAACGATACAAATTAGAGAGCAGATAGAGATGAATAGCAGAGAGAGGAGATGGTCTCTTCGTGGAATGACAGCTCTTGTCACCGGTGGAACCAAAGGAATTGGGTATGCGATAGTGGAGGAATTGGCAGGGCTGGGTGCAATTGTGCATACTTGTTCCCGAAATGAAGTTGACCTTAATGACTGCCAGAGTCAGTGGGAGAAGAAGGGTTTTCAAGTCACAGGCTCAGTCTGTGATGTGGTGTCAAAAACCCAAAGAGAGGAGCTTATAAACAAGGTCTCATCACTTTTTGATGGCAAACTCAACATCCTTATAAACAATGTGGGGACTAGCTTGACGAAAGCAACGCTAGAGTACACAGCTGAAGATTACTCATTCATAATGAGTACCAATCTTGAATCTGCTTACAACTTTTGCCAGCTTTCACATCCTCTTCTCAAAGCTGCAGGAGCTGCTAGCATTGTTTTTTTGTCCTCTACTGCTGGTGTGGTCTCAATAGATGGTGAATCTATATATTCTGCCACTAAAGGTGCAATGAATCAGTTAGCAAAAAACTTAGCATGTGAGTGGGCGAAGGATAACATAAGGACCAACAGTGTGGCACCTTGGTTCATCACGACTCCCCTCGCTGAACCTTTTCTCCGAAATGAAAAGAAATTGGAGATGATAAACTCTCGGTGCCCTTTAGGACGTCCTGGAGAGCCAGAGGAGGTGTCTTCCTTGGTAGCATTTCTATGTCTACCTGCAGCCTCTTACATTACTGGGCAGACTATTATCGTCGACGGCGGGGTGACCGTCAATGGCTTGCTCTTCCAAGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

294

Amino Acids

32.05

Weight (kDa)

5.37

Isoelectric Point (pI)

30.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 43 - 233 2.5e-45 short chain dehydrogenase
KR PF08659 43 - 204 1.5e-12 KR domain
adh_short_C2 PF13561 51 - 284 7e-56 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 326, 371
AatII GACGTC 1 cut(s) 751
Acc36I ACCTGC 1 cut(s) 808
AccB1I GGYRCC 2 cut(s) 658, 735
AccI GTMKAC 2 cut(s) 796, 837
AciI CCGC 1 cut(s) 843
AcuI CTGAAG 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 748
AfaI GTAC 2 cut(s) 413, 445
AfiI CCNNNNNNNGG 1 cut(s) 316
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 2 cut(s) 272, 455
AjnI CCWGG 1 cut(s) 751
AloI GAACNNNNNNTCC 2 cut(s) 681, 713
AluBI AGCT 7 cut(s) 131, 322, 390, 419, 478, 500, 509
AluI AGCT 7 cut(s) 131, 322, 390, 419, 478, 500, 509
Alw26I GTCTC 3 cut(s) 117, 340, 553
AlwNI CAGNNNCTG 1 cut(s) 509
ApeKI GCWGC 3 cut(s) 500, 509, 803
AseI ATTAAT 1 cut(s) 18
AsiGI ACCGGT 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 693
AspS9I GGNCC 1 cut(s) 645
AsuHPI GGTGA 3 cut(s) 130, 572, 859
AsuNHI GCTAGC 1 cut(s) 512
AvaII GGWCC 1 cut(s) 645
BaeGI GKGCMC 1 cut(s) 740
BanI GGYRCC 2 cut(s) 658, 735
BbsI GAAGAC 1 cut(s) 765
BbvI GCAGC 3 cut(s) 487, 496, 815
BccI CCATC 3 cut(s) 102, 344, 551
BceAI ACGGC 2 cut(s) 54, 856
BciT130I CCWGG 1 cut(s) 753
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 3 cut(s) 117, 340, 553
BfaI CTAG 3 cut(s) 387, 407, 513
BfmI CTRYAG 2 cut(s) 501, 801
BfuAI ACCTGC 1 cut(s) 808
BisI GCNGC 3 cut(s) 501, 510, 804
BlsI GCNGC 3 cut(s) 502, 511, 805
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 645
BmiI GGNNCC 3 cut(s) 148, 660, 737
BmrFI CCNGG 1 cut(s) 753
BmrI ACTGGG 1 cut(s) 828
BmtI GCTAGC 1 cut(s) 516
BmuI ACTGGG 1 cut(s) 828
BpiI GAAGAC 1 cut(s) 765
BplI GAGNNNNNCTC 2 cut(s) 97, 129
BpmI CTGGAG 1 cut(s) 774
BsaHI GRCGYC 1 cut(s) 748
BsaI GGTCTC 3 cut(s) 117, 340, 553
BsaJI CCNNGG 3 cut(s) 662, 777, 871
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 38, 823
Bse3DI GCAATG 1 cut(s) 597
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 3 cut(s) 662, 777, 871
BseGI GGATG 2 cut(s) 363, 484
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 2 cut(s) 38, 823
BseRI GAGGAG 3 cut(s) 118, 332, 779
BseSI GKGCMC 1 cut(s) 740
BseXI GCAGC 3 cut(s) 487, 496, 815
BseYI CCCAGC 1 cut(s) 190
BshNI GGYRCC 2 cut(s) 658, 735
BshTI ACCGGT 1 cut(s) 140
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 3 cut(s) 117, 340, 553
BsmFI GGGAC 1 cut(s) 397
Bso31I GGTCTC 3 cut(s) 117, 340, 553
Bsp1286I GDGCHC 1 cut(s) 740
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 1 cut(s) 843
BspCNI CTCAG 1 cut(s) 296
BspLI GGNNCC 3 cut(s) 148, 660, 737
BspMAI CTGCAG 2 cut(s) 505, 805
BspMI ACCTGC 1 cut(s) 808
BspOI GCTAGC 1 cut(s) 516
BspQI GCTCTTC 1 cut(s) 872
BspT107I GGYRCC 2 cut(s) 658, 735
BspTNI GGTCTC 3 cut(s) 117, 340, 553
BsrDI GCAATG 1 cut(s) 597
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 2 cut(s) 38, 823
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 3 cut(s) 662, 777, 871
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 748
BssT1I CCWWGG 3 cut(s) 662, 777, 871
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 2 cut(s) 653, 853
Bst6I CTCTTC 3 cut(s) 120, 495, 872
BstACI GRCGYC 1 cut(s) 748
BstAPI GCANNNNNTGC 1 cut(s) 509
BstC8I GCNNGC 3 cut(s) 476, 514, 863
BstDEI CTNAG 2 cut(s) 283, 613
BstEII GGTNACC 1 cut(s) 847
BstF5I GGATG 2 cut(s) 363, 484
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 3 cut(s) 117, 340, 553
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 2 cut(s) 506, 509
BstNI CCWGG 1 cut(s) 753
BstNSI RCATGY 1 cut(s) 621
BstPI GGTNACC 1 cut(s) 847
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 2 cut(s) 501, 801
BstSLI GKGCMC 1 cut(s) 740
BstV1I GCAGC 3 cut(s) 487, 496, 815
BstV2I GAAGAC 1 cut(s) 765
BstXI CCANNNNNNTGG 1 cut(s) 655
BtsCI GGATG 2 cut(s) 363, 484
BtsIMutI CAGTG 2 cut(s) 257, 658
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 3 cut(s) 476, 514, 863
CaiI CAGNNNCTG 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 645
Csp6I GTAC 2 cut(s) 412, 444
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 2 cut(s) 618, 879
CviQI GTAC 2 cut(s) 412, 444
DdeI CTNAG 2 cut(s) 283, 613
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 3 cut(s) 120, 495, 872
EarI CTCTTC 3 cut(s) 120, 495, 872
Eco130I CCWWGG 3 cut(s) 662, 777, 871
Eco31I GGTCTC 3 cut(s) 117, 340, 553
Eco47I GGWCC 1 cut(s) 645
Eco57I CTGAAG 1 cut(s) 441
Eco91I GGTNACC 1 cut(s) 847
EcoO65I GGTNACC 1 cut(s) 847
EcoRII CCWGG 1 cut(s) 751
EcoT14I CCWWGG 3 cut(s) 662, 777, 871
ErhI CCWWGG 3 cut(s) 662, 777, 871
FaeI CATG 2 cut(s) 621, 882
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 397
FatI CATG 2 cut(s) 617, 878
FauI CCCGC 1 cut(s) 836
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 2 cut(s) 796, 837
Fnu4HI GCNGC 3 cut(s) 501, 510, 804
FokI GGATG 2 cut(s) 350, 471
Fsp4HI GCNGC 3 cut(s) 501, 510, 804
FspBI CTAG 3 cut(s) 387, 407, 513
GluI GCNGC 3 cut(s) 501, 510, 804
GsaI CCCAGC 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 774
HapII CCGG 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 748
Hin1II CATG 2 cut(s) 621, 882
HincII GTYRAC 2 cut(s) 229, 838
HindII GTYRAC 2 cut(s) 229, 838
HinfI GANTC 5 cut(s) 247, 455, 563, 595, 676
HpaII CCGG 1 cut(s) 141
HphI GGTGA 3 cut(s) 130, 572, 859
Hpy166II GTNNAC 4 cut(s) 229, 414, 797, 838
Hpy188I TCNGA 1 cut(s) 701
Hpy188III TCNNGA 4 cut(s) 26, 216, 452, 673
Hpy8I GTNNAC 4 cut(s) 229, 414, 797, 838
Hpy99I CGWCG 2 cut(s) 839, 842
HpyAV CCTTC 2 cut(s) 256, 625
HpyCH4III ACNGT 2 cut(s) 653, 853
HpyCH4IV ACGT 1 cut(s) 748
HpyCH4V TGCA 5 cut(s) 197, 205, 503, 590, 803
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 509
HpyF3I CTNAG 2 cut(s) 283, 613
HpySE526I ACGT 1 cut(s) 748
Hsp92I GRCGYC 1 cut(s) 748
Hsp92II CATG 2 cut(s) 621, 882
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 872
LmnI GCTCC 3 cut(s) 319, 506, 875
Lsp1109I GCAGC 3 cut(s) 487, 496, 815
MaeI CTAG 3 cut(s) 387, 407, 513
MaeII ACGT 1 cut(s) 748
MaeIII GTNAC 3 cut(s) 136, 274, 847
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 6 cut(s) 107, 271, 434, 482, 765, 859
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 740
MluCI AATT 7 cut(s) 15, 19, 69, 156, 179, 198, 713
MlyI GAGTC 2 cut(s) 256, 670
MnlI CCTC 9 cut(s) 96, 169, 310, 498, 541, 692, 757, 760, 817
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 2 cut(s) 18, 234
MslI CAYNNNNRTG 2 cut(s) 622, 790
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 753
MunI CAATTG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 753
MwoI GCNNNNNNNGC 2 cut(s) 506, 509
NdeII GATC 1 cut(s) 7
NheI GCTAGC 1 cut(s) 512
NlaIII CATG 2 cut(s) 621, 882
NlaIV GGNNCC 3 cut(s) 148, 660, 737
NmuCI GTSAC 3 cut(s) 136, 274, 847
NspI RCATGY 1 cut(s) 621
PciSI GCTCTTC 1 cut(s) 872
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 3 cut(s) 455, 563, 595
PfoI TCCNGGA 1 cut(s) 751
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 3 cut(s) 502, 511, 805
PleI GAGTC 2 cut(s) 255, 670
PpsI GAGTC 2 cut(s) 255, 670
PshBI ATTAAT 1 cut(s) 18
PsiI TTATAA 2 cut(s) 326, 371
Psp6I CCWGG 1 cut(s) 751
PspEI GGTNACC 1 cut(s) 847
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 3 cut(s) 148, 660, 737
PspPI GGNCC 1 cut(s) 645
PstI CTGCAG 2 cut(s) 505, 805
PstNI CAGNNNCTG 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 2 cut(s) 413, 445
RsaNI GTAC 2 cut(s) 412, 444
RseI CAYNNNNRTG 2 cut(s) 622, 790
SalI GTCGAC 1 cut(s) 836
SapI GCTCTTC 1 cut(s) 872
SaqAI TTAA 2 cut(s) 18, 234
SatI GCNGC 3 cut(s) 501, 510, 804
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 645
SchI GAGTC 2 cut(s) 256, 670
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 1 cut(s) 740
SfcI CTRYAG 2 cut(s) 501, 801
SgrAI CRCCGGYG 1 cut(s) 140
SgrDI CGTCGACG 1 cut(s) 836
SinI GGWCC 1 cut(s) 645
SmiMI CAYNNNNRTG 2 cut(s) 622, 790
Sse9I AATT 7 cut(s) 15, 19, 69, 156, 179, 198, 713
SsiI CCGC 1 cut(s) 843
SspMI CTAG 3 cut(s) 387, 407, 513
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 3 cut(s) 662, 777, 871
TaaI ACNGT 2 cut(s) 653, 853
TaiI ACGT 1 cut(s) 751
TaqI TCGA 1 cut(s) 837
TasI AATT 7 cut(s) 15, 19, 69, 156, 179, 198, 713
TatI WGTACW 1 cut(s) 411
TfiI GAWTC 3 cut(s) 455, 563, 595
Tru1I TTAA 2 cut(s) 18, 234
Tru9I TTAA 2 cut(s) 18, 234
TscAI CASTG 2 cut(s) 257, 658
TseFI GTSAC 3 cut(s) 136, 274, 847
TseI GCWGC 3 cut(s) 500, 509, 803
Tsp45I GTSAC 3 cut(s) 136, 274, 847
TspDTI ATGAA 6 cut(s) 104, 237, 424, 608, 658, 720
TspRI CASTG 2 cut(s) 257, 658
VpaK11BI GGWCC 1 cut(s) 645
VspI ATTAAT 1 cut(s) 18
XceI RCATGY 1 cut(s) 621
XmiI GTMKAC 2 cut(s) 796, 837
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 3 cut(s) 387, 407, 513
ZraI GACGTC 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.