AT2G29300

tropinone reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000208
Physical Location & Seq
Forward (+)
12588191 .. 12589759
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29300.2

Sequence Viewer

Length: 792 bp
ATGGATAAAAGATGGAGTCTACAAGGAATGACTGCTCTTGTAACCGGTGCAGCCAGCGGTATCGGTTATGCCATAGTAGAGGAGTTAGCTGGTTTTGGAGCTAGAATCCATGTATGCGACATATCCGAAACTCTGCTTAATCAAAGCTTAAGAGAATGGGAAAAGAAAGGGTTTCAAGTGAGTGGTTCAGTCTGTGATGTAACCTCTCGTCCCGAGAGAGAAAAACTGATGCAAACCGTCTCTTCGCTTTTCGATGGCAAACTAAACATTCTTGTAAACAATGTGGGCGTACTTCGCGCAAAGCCAACAACAGAATATGTGGCAGACGATTTCACTTTTCATATCTCAACAAACTTGGAAGCTGCTTACCATTTTTGCCAACTTTCACATCCTCTCTTAAAGACTTCAGGCTATGGAAGCATCGTGTTCCTTTCCTCTGTTTCTGGGGTTGTGTCAATAACTGACTGTGGATCACTTTATGGTCTAACAAAAGGAGCTCTAAATCAGCTAGCTAGAAATTTGGCATGTGAATGGGCAAAAGACGGCATAAGAGCCAATGCGGTTGCACCTAATGTTGTCAAGACTGCTCAGTCTCAATTCTTTCTTCAAGACGTCAGTAAAAAGGAGGGATTGTTTAGTAGAACTCCACTTGGTCGGTCTGGAGAGCCGAATGAAGTAGCATCACTAGTGGTCTTCTTGTGTCTTCCTGCAGCTTCTTATATCACAGGTCAAACCATTTGTATTGATGGAGGCCTCACGGTTTACGGTTTCTCCTCTCAACCACAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

263

Amino Acids

28.26

Weight (kDa)

6.43

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 11 - 199 6.4e-44 short chain dehydrogenase
KR PF08659 11 - 172 1.3e-09 KR domain
adh_short_C2 PF13561 16 - 253 1.6e-58 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 589
AatII GACGTC 1 cut(s) 615
AccI GTMKAC 1 cut(s) 19
AccII CGCG 1 cut(s) 297
AciI CCGC 2 cut(s) 57, 560
AclWI GGATC 1 cut(s) 478
AcsI RAATTY 1 cut(s) 517
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 1 cut(s) 612
AfaI GTAC 1 cut(s) 291
AflII CTTAAG 1 cut(s) 148
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 2 cut(s) 176, 608
AhlI ACTAGT 1 cut(s) 685
AluBI AGCT 8 cut(s) 89, 101, 147, 362, 497, 508, 512, 713
AluI AGCT 8 cut(s) 89, 101, 147, 362, 497, 508, 512, 713
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 2 cut(s) 244, 597
AlwI GGATC 1 cut(s) 478
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 1 cut(s) 751
ApeKI GCWGC 3 cut(s) 50, 362, 710
ApoI RAATTY 1 cut(s) 517
AsiGI ACCGGT 1 cut(s) 44
AspLEI GCGC 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 508
AvaI CYCGRG 1 cut(s) 212
BanII GRGCYC 1 cut(s) 499
BbsI GAAGAC 2 cut(s) 685, 695
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 3 cut(s) 62, 349, 722
BccI CCATC 3 cut(s) 6, 248, 740
BceAI ACGGC 1 cut(s) 559
BcoDI GTCTC 2 cut(s) 244, 597
BcuI ACTAGT 1 cut(s) 685
BfaI CTAG 4 cut(s) 102, 509, 513, 686
BfmI CTRYAG 1 cut(s) 708
BfrI CTTAAG 1 cut(s) 148
BisI GCNGC 3 cut(s) 51, 363, 711
BlsI GCNGC 3 cut(s) 52, 364, 712
BmeT110I CYCGRG 1 cut(s) 212
BmsI GCATC 3 cut(s) 219, 429, 689
BmtI GCTAGC 1 cut(s) 512
BpiI GAAGAC 2 cut(s) 685, 695
BpmI CTGGAG 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 612
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 4 cut(s) 617, 647, 755, 785
Bse118I RCCGGY 1 cut(s) 44
BseGI GGATG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 602
BseRI GAGGAG 2 cut(s) 95, 763
BseXI GCAGC 3 cut(s) 62, 349, 722
BsgI GTGCAG 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 1 cut(s) 753
BshTI ACCGGT 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 195
BsmAI GTCTC 2 cut(s) 244, 597
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 1 cut(s) 753
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 1 cut(s) 470
BspACI CCGC 2 cut(s) 57, 560
BspANI GGCC 1 cut(s) 753
BspCNI CTCAG 1 cut(s) 601
BspFNI CGCG 1 cut(s) 297
BspMAI CTGCAG 1 cut(s) 712
BspOI GCTAGC 1 cut(s) 512
BspPI GGATC 1 cut(s) 478
BspTI CTTAAG 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 1 cut(s) 470
BssNI GRCGYC 1 cut(s) 612
Bst4CI ACNGT 4 cut(s) 238, 467, 760, 767
Bst6I CTCTTC 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 612
BstAFI CTTAAG 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 55, 510
BstDEI CTNAG 1 cut(s) 588
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 1 cut(s) 473
BstMAI GTCTC 2 cut(s) 244, 597
BstMBI GATC 1 cut(s) 470
BstMWI GCNNNNNNNGC 2 cut(s) 294, 417
BstNSI RCATGY 1 cut(s) 528
BstSFI CTRYAG 1 cut(s) 708
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 62, 349, 722
BstV2I GAAGAC 2 cut(s) 685, 695
BsuRI GGCC 1 cut(s) 753
BtsCI GGATG 1 cut(s) 388
Cac8I GCNNGC 2 cut(s) 55, 510
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 44
Csp6I GTAC 1 cut(s) 290
CspAI ACCGGT 1 cut(s) 44
CviAII CATG 2 cut(s) 110, 525
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 1 cut(s) 588
DpnI GATC 1 cut(s) 472
DpnII GATC 1 cut(s) 470
DrdI GACNNNNNNGTC 1 cut(s) 589
DseDI GACNNNNNNGTC 1 cut(s) 589
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Ecl136II GAGCTC 1 cut(s) 497
Eco147I AGGCCT 1 cut(s) 753
Eco24I GRGCYC 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 499
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 2 cut(s) 113, 528
FaqI GGGAC 1 cut(s) 195
FatI CATG 2 cut(s) 109, 524
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 51, 363, 711
FokI GGATG 1 cut(s) 375
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 3 cut(s) 51, 363, 711
FspBI CTAG 4 cut(s) 102, 509, 513, 686
GlaI GCGC 1 cut(s) 298
GluI GCNGC 3 cut(s) 51, 363, 711
GsuI CTGGAG 1 cut(s) 681
HaeIII GGCC 1 cut(s) 753
HapII CCGG 1 cut(s) 45
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 612
Hin1II CATG 2 cut(s) 113, 528
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 2 cut(s) 16, 105
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 3 cut(s) 20, 277, 763
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 4 cut(s) 212, 580, 608, 660
Hpy8I GTNNAC 3 cut(s) 20, 277, 763
HpyCH4III ACNGT 4 cut(s) 238, 467, 760, 767
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 4 cut(s) 50, 232, 566, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 417
HpyF3I CTNAG 1 cut(s) 588
HpySE526I ACGT 1 cut(s) 612
Hsp92I GRCGYC 1 cut(s) 612
Hsp92II CATG 2 cut(s) 113, 528
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 1 cut(s) 470
LmnI GCTCC 2 cut(s) 98, 494
LpnPI CCDG 9 cut(s) 58, 67, 75, 393, 429, 645, 711, 720, 770
Lsp1109I GCAGC 3 cut(s) 62, 349, 722
LweI GCATC 3 cut(s) 219, 429, 689
MaeI CTAG 4 cut(s) 102, 509, 513, 686
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 40, 199
MalI GATC 1 cut(s) 472
MboI GATC 1 cut(s) 470
MboII GAAGA 4 cut(s) 234, 596, 685, 695
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 2 cut(s) 517, 596
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 8 cut(s) 73, 214, 402, 445, 619, 743, 764, 784
MseI TTAA 3 cut(s) 138, 149, 398
MslI CAYNNNNRTG 1 cut(s) 529
MspA1I CMGCKG 1 cut(s) 57
MspCI CTTAAG 1 cut(s) 148
MspI CCGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 2 cut(s) 294, 417
NdeII GATC 1 cut(s) 470
NheI GCTAGC 1 cut(s) 508
NlaIII CATG 2 cut(s) 113, 528
NspI RCATGY 1 cut(s) 528
PceI AGGCCT 1 cut(s) 753
PfeI GAWTC 1 cut(s) 105
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 3 cut(s) 52, 364, 712
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 499
PstI CTGCAG 1 cut(s) 712
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 529
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 3 cut(s) 138, 149, 398
SatI GCNGC 3 cut(s) 51, 363, 711
Sau3AI GATC 1 cut(s) 470
SchI GAGTC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 499
SfaNI GCATC 3 cut(s) 219, 429, 689
SfcI CTRYAG 1 cut(s) 708
SmiMI CAYNNNNRTG 1 cut(s) 529
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SpeI ACTAGT 1 cut(s) 685
Sse9I AATT 2 cut(s) 517, 596
SseBI AGGCCT 1 cut(s) 753
SsiI CCGC 2 cut(s) 57, 560
SspMI CTAG 4 cut(s) 102, 509, 513, 686
SstI GAGCTC 1 cut(s) 499
StuI AGGCCT 1 cut(s) 753
TaaI ACNGT 4 cut(s) 238, 467, 760, 767
TaiI ACGT 1 cut(s) 615
TaqI TCGA 1 cut(s) 252
TaqII GACCGA 1 cut(s) 645
TasI AATT 2 cut(s) 517, 596
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 3 cut(s) 138, 149, 398
Tru9I TTAA 3 cut(s) 138, 149, 398
TseI GCWGC 3 cut(s) 50, 362, 710
TspDTI ATGAA 2 cut(s) 329, 687
Vha464I CTTAAG 1 cut(s) 148
XapI RAATTY 1 cut(s) 517
XceI RCATGY 1 cut(s) 528
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 4 cut(s) 102, 509, 513, 686
ZraI GACGTC 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.