Rroxscaffold_3G00236380

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000208
Physical Location & Seq
Reverse (-)
23566205 .. 23567852
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236380.1

Sequence Viewer

Length: 831 bp
ATGGCTCAACCAAACAATCCTACTAGCAATGACAGCAGAGATAGAAGATGGTCTCTTGAGGGAATGACTGCTCTTGTCACTGGGGGAACCAAAGGCATTGGATATGCTATTGTGGAGGAATTGGCAAGGCTAGGTGCAAAGGTCCATACTTGTTCCCGGAATGAAGTCCAACTCAATGAGCGGTTGAGTCAGTGGAAGACCAAGGGTTTTAATCAAGTCACTGGTTCTGTCTGTGATTTGGTCTCAAAGCCCCAACGAGAGGAGCTCATGAAGAAGGTCTCATCACTGTTCAATGGGAAACTAAACATCCTTGTAAACAATGTGGGAACCAATATAGCAAAGCCAACAACTGATATTACAGCTGAAGATTACTCATTTCTTATGGGAACCAATCTTGACTCTTATTACAATATGTGCCAACTTGCACATCCTCTCCTCAAAACATCGGGAGCTGGTAACATTGTTCTTATATCTTCTGTTGCTGGTGTCGTAACAGTTGGGGGGATTGGAAGTGTCTATGCTGCCACTAAAGGAGCAATTAACCAATTGGCAAGATACTTGGCGTGCGAGTGGGGAAAAGACAATATTAGAATCAACAGCGTTGCACCTTGGTTCATACGAACTCCCTTCACCGAAGATGTTCTCAGTAACCAAACGATGCTTGAGGCTATTAACTCTCGAACACCTTTACAACGCCCTGGCGAGCCGGAAGAGGTTTCTTCCTTGGTGGCGTTTCTGTGCTTGCCTGCTGCCTCATACATAACTGGGCAGACTATTTGCATTGACGGAGGGATGACTGTTAATGGCATAAGCTTATGCTTTCAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

276

Amino Acids

29.86

Weight (kDa)

6.73

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDR PF23441 21 - 265 1.7e-06 SDR-like rossmann domain
adh_short PF00106 23 - 216 1e-46 short chain dehydrogenase
KR PF08659 23 - 187 1.7e-09 KR domain
adh_short_C2 PF13561 31 - 266 8.3e-60 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AciI CCGC 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 384
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 2 cut(s) 292, 824
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 4 cut(s) 265, 362, 452, 813
AluI AGCT 4 cut(s) 265, 362, 452, 813
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 3 cut(s) 57, 247, 283
ApeKI GCWGC 2 cut(s) 521, 749
Asp700I GAANNNNTTC 1 cut(s) 639
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 622
AvaII GGWCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 508, 736
BccI CCATC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 699
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 3 cut(s) 57, 247, 283
BfaI CTAG 3 cut(s) 24, 131, 829
BisI GCNGC 2 cut(s) 522, 750
BlsI GCNGC 2 cut(s) 523, 751
Bme1390I CCNGG 2 cut(s) 157, 699
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 3 cut(s) 88, 328, 388
BmrFI CCNGG 2 cut(s) 157, 699
BmrI ACTGGG 2 cut(s) 90, 774
BmsI GCATC 1 cut(s) 648
BmuI ACTGGG 2 cut(s) 90, 774
BpiI GAAGAC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BpuEI CTTGAG 2 cut(s) 77, 683
BpuMI CCSGG 1 cut(s) 157
BsaI GGTCTC 3 cut(s) 57, 247, 283
BsaJI CCNNGG 4 cut(s) 201, 608, 697, 723
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 3 cut(s) 85, 226, 769
Bse3DI GCAATG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 4 cut(s) 201, 608, 697, 723
BseGI GGATG 3 cut(s) 306, 427, 798
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 658
BseNI ACTGG 3 cut(s) 85, 226, 769
BseRI GAGGAG 2 cut(s) 275, 425
BseXI GCAGC 2 cut(s) 508, 736
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 2 cut(s) 157, 707
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 3 cut(s) 57, 247, 283
Bso31I GGTCTC 3 cut(s) 57, 247, 283
Bsp1286I GDGCHC 1 cut(s) 267
BspACI CCGC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 657
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 88, 328, 388
BspTNI GGTCTC 3 cut(s) 57, 247, 283
BsrBI CCGCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 3 cut(s) 85, 226, 769
BssECI CCNNGG 4 cut(s) 201, 608, 697, 723
BssT1I CCWWGG 3 cut(s) 201, 608, 723
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 3 cut(s) 288, 496, 799
Bst6I CTCTTC 1 cut(s) 705
BstC8I GCNNGC 4 cut(s) 565, 704, 743, 747
BstDEI CTNAG 1 cut(s) 644
BstF5I GGATG 3 cut(s) 306, 427, 798
BstMAI GTCTC 3 cut(s) 57, 247, 283
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 699
BstSCI CCNGG 2 cut(s) 155, 697
BstV1I GCAGC 2 cut(s) 508, 736
BstV2I GAAGAC 1 cut(s) 203
BtsCI GGATG 3 cut(s) 306, 427, 798
BtsIMutI CAGTG 4 cut(s) 78, 197, 219, 284
Cac8I GCNNGC 4 cut(s) 565, 704, 743, 747
CciI TCATGA 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 142
CviAII CATG 1 cut(s) 268
DdeI CTNAG 1 cut(s) 644
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 3 cut(s) 201, 608, 723
Eco24I GRGCYC 1 cut(s) 267
Eco31I GGTCTC 3 cut(s) 57, 247, 283
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 697
EcoT14I CCWWGG 3 cut(s) 201, 608, 723
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 3 cut(s) 201, 608, 723
FaeI CATG 1 cut(s) 271
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 522, 750
FokI GGATG 3 cut(s) 293, 414, 805
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 2 cut(s) 522, 750
FspBI CTAG 3 cut(s) 24, 131, 829
GluI GCNGC 2 cut(s) 522, 750
HapII CCGG 2 cut(s) 157, 707
Hin1II CATG 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 811
HinfI GANTC 3 cut(s) 187, 398, 591
HpaII CCGG 2 cut(s) 157, 707
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 1 cut(s) 316
Hpy188III TCNNGA 6 cut(s) 56, 268, 395, 447, 678, 824
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 2 cut(s) 268, 637
HpyCH4III ACNGT 3 cut(s) 288, 496, 799
HpyCH4V TGCA 4 cut(s) 137, 425, 605, 780
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 644
Hsp92II CATG 1 cut(s) 271
LmnI GCTCC 3 cut(s) 262, 449, 533
Lsp1109I GCAGC 2 cut(s) 508, 736
LweI GCATC 1 cut(s) 648
MaeI CTAG 3 cut(s) 24, 131, 829
MaeIII GTNAC 5 cut(s) 76, 217, 455, 490, 647
MbiI CCGCTC 1 cut(s) 181
MboII GAAGA 8 cut(s) 57, 208, 283, 377, 465, 647, 711, 722
MfeI CAATTG 1 cut(s) 545
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 3 cut(s) 119, 537, 545
MlyI GAGTC 2 cut(s) 196, 392
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 9 cut(s) 52, 109, 253, 441, 446, 658, 706, 763, 782
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 4 cut(s) 210, 540, 672, 801
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 2 cut(s) 157, 707
MspR9I CCNGG 2 cut(s) 157, 699
MunI CAATTG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 699
MwoI GCNNNNNNNGC 1 cut(s) 33
NciI CCSGG 1 cut(s) 157
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 3 cut(s) 88, 328, 388
NmuCI GTSAC 2 cut(s) 76, 217
PagI TCATGA 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 1 cut(s) 591
PfoI TCCNGGA 1 cut(s) 155
PkrI GCNGC 2 cut(s) 523, 751
PleI GAGTC 2 cut(s) 195, 392
PpsI GAGTC 2 cut(s) 195, 392
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 697
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 3 cut(s) 88, 328, 388
PspPI GGNCC 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 362
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 4 cut(s) 210, 540, 672, 801
SatI GCNGC 2 cut(s) 522, 750
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 2 cut(s) 196, 392
ScrFI CCNGG 2 cut(s) 157, 699
SduI GDGCHC 1 cut(s) 267
SfaNI GCATC 1 cut(s) 648
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 56, 662
SmoI CTYRAG 2 cut(s) 56, 662
Sse9I AATT 3 cut(s) 119, 537, 545
SsiI CCGC 1 cut(s) 181
SspI AATATT 1 cut(s) 586
SspMI CTAG 3 cut(s) 24, 131, 829
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 2 cut(s) 155, 697
StyI CCWWGG 3 cut(s) 201, 608, 723
TaaI ACNGT 3 cut(s) 288, 496, 799
TaqI TCGA 1 cut(s) 679
TasI AATT 3 cut(s) 119, 537, 545
TfiI GAWTC 1 cut(s) 591
Tru1I TTAA 4 cut(s) 210, 540, 672, 801
Tru9I TTAA 4 cut(s) 210, 540, 672, 801
TscAI CASTG 4 cut(s) 85, 197, 226, 291
TseFI GTSAC 2 cut(s) 76, 217
TseI GCWGC 2 cut(s) 521, 749
Tsp45I GTSAC 2 cut(s) 76, 217
TspDTI ATGAA 3 cut(s) 177, 284, 604
TspGWI ACGGA 1 cut(s) 801
TspRI CASTG 4 cut(s) 85, 197, 226, 291
VpaK11BI GGWCC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 3 cut(s) 24, 131, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.