RchiOBHm_Chr4g0408501

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000208
Physical Location & Seq
Reverse (-)
31303296 .. 31305143
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37961

Sequence Viewer

Length: 750 bp
ATGCATCACCATTTTGATAGCCACAACTTTAGTGAATTAGCTAGACCGTGTATCAATTGTGCAAGTGTACATACTTGCTCACGGAATGAAGCGGAGCTCAATGAATGCTTGAATCAATGGAAGAAGAAGGGTTTTCATCAAGTCACTGGTTCAGTGTGTGATGTGGTCTCAAAAATCCAGAGAGAGGAACTAATACAGAAGGTCTCATCACTGTTTCATGGGAAACTTAATATCCTTATAAACAACGTGGGAGCTCAAATAGGAAAGCCAGCAACTGAGTACACAGCTGAAGACTACTCATTTATCATGAGTACCAATCTTGAATCTACTTACACTATGTGCCAACTAGCACATCCTCTTCTCAAAACTTCAGGAGCTGGTAACATTATTTTTCTGTCTTCAGTTGGTGGTGTGGTCTCAATGGGCGAGGGTACGAGTGTATACGGTGCAACTAAAGGAGCAATGAATCAATTGGCCAAAACTTTGGCTTGTGAGTGGGCAAAAGACAAGATAAGGATTAATAGTGTTGCACCTGCGCTCACCAGAACTCCTCTTGTTGAACCTATTTTGGGTGACGAAAAGTTTATGGAGGCTATCATCTCTCGAACCCCATTAGGACGTATAGGAGAGCCTGAAGAGGTGTCTGCCTTGGTGGCATTTCTATGCCTTCCTGCAGCCTCATACATAACAGGGCAGACTATTTGCATCGATGGAGGGCTAACTGTCAATGGCTTCCAGTTCCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

249

Amino Acids

26.98

Weight (kDa)

6.24

Isoelectric Point (pI)

28.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 21 - 241 6.1e-53 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 21 - 189 4.2e-37 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
AarI CACCTGC 1 cut(s) 541
Acc36I ACCTGC 1 cut(s) 541
AccI GTMKAC 1 cut(s) 441
AciI CCGC 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 474
AcuI CTGAAG 4 cut(s) 309, 354, 384, 654
AdeI CACNNNGTG 1 cut(s) 339
AfaI GTAC 4 cut(s) 69, 281, 313, 433
AfiI CCNNNNNNNGG 2 cut(s) 184, 569
AgsI TTSAA 3 cut(s) 112, 323, 560
AluBI AGCT 5 cut(s) 41, 97, 254, 287, 377
AluI AGCT 5 cut(s) 41, 97, 254, 287, 377
Alw21I GWGCWC 2 cut(s) 99, 256
Alw26I GTCTC 3 cut(s) 172, 208, 421
AlwNI CAGNNNCTG 2 cut(s) 275, 377
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 1 cut(s) 674
AseI ATTAAT 1 cut(s) 519
AspLEI GCGC 1 cut(s) 538
AsuHPI GGTGA 2 cut(s) 532, 584
BaeI ACNNNNGTAYC 2 cut(s) 423, 456
BalI TGGCCA 1 cut(s) 476
BanII GRGCYC 2 cut(s) 99, 256
BbsI GAAGAC 2 cut(s) 297, 390
Bbv12I GWGCWC 2 cut(s) 99, 256
BbvI GCAGC 1 cut(s) 686
BccI CCATC 1 cut(s) 704
BcoDI GTCTC 3 cut(s) 172, 208, 421
BfaI CTAG 2 cut(s) 42, 347
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 541
BglI GCCNNNNNGGC 1 cut(s) 653
BisI GCNGC 1 cut(s) 675
BlsI GCNGC 1 cut(s) 676
BmsI GCATC 2 cut(s) 13, 714
BpiI GAAGAC 2 cut(s) 297, 390
Bsa29I ATCGAT 1 cut(s) 708
BsaI GGTCTC 3 cut(s) 172, 208, 421
BsaJI CCNNGG 1 cut(s) 648
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 569
Bse1I ACTGG 2 cut(s) 151, 736
Bse3DI GCAATG 1 cut(s) 468
BseCI ATCGAT 1 cut(s) 708
BseDI CCNNGG 1 cut(s) 648
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 184, 569
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 151, 736
BseRI GAGGAG 1 cut(s) 540
BseXI GCAGC 1 cut(s) 686
BshFI GGCC 1 cut(s) 476
BshVI ATCGAT 1 cut(s) 708
BsiHKAI GWGCWC 2 cut(s) 99, 256
BslI CCNNNNNNNGG 2 cut(s) 184, 569
BsmAI GTCTC 3 cut(s) 172, 208, 421
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 1 cut(s) 476
Bso31I GGTCTC 3 cut(s) 172, 208, 421
Bsp1286I GDGCHC 2 cut(s) 99, 256
Bsp1407I TGTACA 1 cut(s) 67
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 476
BspCNI CTCAG 1 cut(s) 268
BspDI ATCGAT 1 cut(s) 708
BspHI TCATGA 1 cut(s) 306
BspMAI CTGCAG 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 541
BspTNI GGTCTC 3 cut(s) 172, 208, 421
BsrDI GCAATG 1 cut(s) 468
BsrGI TGTACA 1 cut(s) 67
BsrI ACTGG 2 cut(s) 151, 736
BssECI CCNNGG 1 cut(s) 648
BssNAI GTATAC 1 cut(s) 442
BssT1I CCWWGG 1 cut(s) 648
Bst1107I GTATAC 1 cut(s) 442
Bst4CI ACNGT 4 cut(s) 48, 213, 446, 724
Bst6I CTCTTC 2 cut(s) 363, 630
BstAUI TGTACA 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 538
BstMAI GTCTC 3 cut(s) 172, 208, 421
BstMWI GCNNNNNNNGC 1 cut(s) 653
BstSFI CTRYAG 1 cut(s) 672
BstV1I GCAGC 1 cut(s) 686
BstV2I GAAGAC 2 cut(s) 297, 390
BstXI CCANNNNNNTGG 1 cut(s) 484
BstZ17I GTATAC 1 cut(s) 442
Bsu15I ATCGAT 1 cut(s) 708
BsuRI GGCC 1 cut(s) 476
BsuTUI ATCGAT 1 cut(s) 708
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 3 cut(s) 144, 159, 209
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 270
CaiI CAGNNNCTG 2 cut(s) 275, 377
CciI TCATGA 1 cut(s) 306
CfoI GCGC 1 cut(s) 538
ClaI ATCGAT 1 cut(s) 708
Csp6I GTAC 4 cut(s) 68, 280, 312, 432
CviAII CATG 2 cut(s) 218, 307
CviQI GTAC 4 cut(s) 68, 280, 312, 432
DdeI CTNAG 1 cut(s) 276
DraIII CACNNNGTG 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 2 cut(s) 363, 630
EarI CTCTTC 2 cut(s) 363, 630
Ecl136II GAGCTC 2 cut(s) 97, 254
Eco130I CCWWGG 1 cut(s) 648
Eco24I GRGCYC 2 cut(s) 99, 256
Eco31I GGTCTC 3 cut(s) 172, 208, 421
Eco53kI GAGCTC 2 cut(s) 97, 254
Eco57I CTGAAG 4 cut(s) 309, 354, 384, 654
EcoICRI GAGCTC 2 cut(s) 97, 254
EcoT14I CCWWGG 1 cut(s) 648
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 99, 256
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 2 cut(s) 221, 310
FatI CATG 2 cut(s) 217, 306
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 1 cut(s) 675
FokI GGATG 1 cut(s) 339
FriOI GRGCYC 2 cut(s) 99, 256
Fsp4HI GCNGC 1 cut(s) 675
FspBI CTAG 2 cut(s) 42, 347
GlaI GCGC 1 cut(s) 537
GluI GCNGC 1 cut(s) 675
HaeIII GGCC 1 cut(s) 476
HhaI GCGC 1 cut(s) 538
Hin1II CATG 2 cut(s) 221, 310
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HinfI GANTC 3 cut(s) 112, 323, 466
HphI GGTGA 2 cut(s) 532, 584
Hpy166II GTNNAC 3 cut(s) 68, 282, 442
Hpy188III TCNNGA 5 cut(s) 178, 307, 320, 372, 603
Hpy8I GTNNAC 3 cut(s) 68, 282, 442
HpyAV CCTTC 3 cut(s) 121, 193, 677
HpyCH4III ACNGT 4 cut(s) 48, 213, 446, 724
HpyCH4IV ACGT 2 cut(s) 246, 619
HpyCH4V TGCA 6 cut(s) 4, 62, 449, 530, 674, 705
HpyF10VI GCNNNNNNNGC 1 cut(s) 653
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 2 cut(s) 246, 619
Hsp92II CATG 2 cut(s) 221, 310
HspAI GCGC 1 cut(s) 536
LmnI GCTCC 4 cut(s) 94, 251, 374, 458
Lsp1109I GCAGC 1 cut(s) 686
LweI GCATC 2 cut(s) 13, 714
MaeI CTAG 2 cut(s) 42, 347
MaeII ACGT 2 cut(s) 246, 619
MaeIII GTNAC 3 cut(s) 142, 380, 572
MboII GAAGA 6 cut(s) 133, 136, 302, 350, 390, 647
MfeI CAATTG 2 cut(s) 55, 470
MhlI GDGCHC 2 cut(s) 99, 256
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 3 cut(s) 35, 55, 470
MluNI TGGCCA 1 cut(s) 476
MnlI CCTC 8 cut(s) 178, 366, 421, 561, 583, 631, 688, 707
Mox20I TGGCCA 1 cut(s) 476
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 476
MseI TTAA 2 cut(s) 228, 519
MslI CAYNNNNRTG 1 cut(s) 661
Msp20I TGGCCA 1 cut(s) 476
MspA1I CMGCKG 1 cut(s) 287
MunI CAATTG 2 cut(s) 55, 470
Mva1269I GAATGC 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 653
NlaIII CATG 2 cut(s) 221, 310
NmuCI GTSAC 2 cut(s) 142, 572
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 306
PaqCI CACCTGC 1 cut(s) 541
PctI GAATGC 1 cut(s) 110
PfeI GAWTC 3 cut(s) 112, 323, 466
PkrI GCNGC 1 cut(s) 676
PshBI ATTAAT 1 cut(s) 519
PsiI TTATAA 1 cut(s) 239
Psp124BI GAGCTC 2 cut(s) 99, 256
PstI CTGCAG 1 cut(s) 676
PstNI CAGNNNCTG 2 cut(s) 275, 377
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 4 cut(s) 69, 281, 313, 433
RsaNI GTAC 4 cut(s) 68, 280, 312, 432
RseI CAYNNNNRTG 1 cut(s) 661
SacI GAGCTC 2 cut(s) 99, 256
SaqAI TTAA 2 cut(s) 228, 519
SatI GCNGC 1 cut(s) 675
SduI GDGCHC 2 cut(s) 99, 256
SfaNI GCATC 2 cut(s) 13, 714
SfcI CTRYAG 1 cut(s) 672
SmiMI CAYNNNNRTG 1 cut(s) 661
Sse9I AATT 3 cut(s) 35, 55, 470
SsiI CCGC 1 cut(s) 92
SspMI CTAG 2 cut(s) 42, 347
SstI GAGCTC 2 cut(s) 99, 256
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 4 cut(s) 48, 213, 446, 724
TaiI ACGT 2 cut(s) 249, 622
TaqI TCGA 2 cut(s) 604, 708
TasI AATT 3 cut(s) 35, 55, 470
TatI WGTACW 2 cut(s) 67, 279
TfiI GAWTC 3 cut(s) 112, 323, 466
Tru1I TTAA 2 cut(s) 228, 519
Tru9I TTAA 2 cut(s) 228, 519
TscAI CASTG 3 cut(s) 151, 159, 216
TseFI GTSAC 2 cut(s) 142, 572
TseI GCWGC 1 cut(s) 674
Tsp45I GTSAC 2 cut(s) 142, 572
TspDTI ATGAA 5 cut(s) 102, 117, 125, 206, 479
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 3 cut(s) 151, 159, 216
VspI ATTAAT 1 cut(s) 519
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 2 cut(s) 42, 347
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.