Rh5BG316300

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000208
Physical Location & Seq
Forward (+)
42075940 .. 42076774
835 bp
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UTR
Exon/CDS
Intron
Rh5BG316300.1

Sequence Viewer

Length: 330 bp
ATGGCGAGAGCAGATTCTAGCATCAACAGCAGAGATAGGAGGTGGTCTCTTGAAGGAATGACTGCCGTCGTCACCGGTGGAACCAAAGGGATTGGGTATGCAATTGTGGAGGAACTGGCGGGGCTAGGTGCTAGTGTACATGCTTGTTCTCGGAATGAAGCCCAACTCAATGAATGCTTGAGTCAATGGAAGAAGAAAGGTTTTCGTCAGGTCACTGGTTCAGTATGTGATGTGGTTTCAAAAATCCAGAGAGAGGAGCTAATACACGAGGTCTCATCACTGTTTCATGGAAAACTTAACATCTTTGTTTTATCTGATAGGCTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

109

Amino Acids

11.91

Weight (kDa)

8.55

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 21 - 103 4.8e-14 short chain dehydrogenase
adh_short_C2 PF13561 29 - 103 9.4e-08 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 119
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 253
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 2 cut(s) 53, 240
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 51, 277
AsiGI ACCGGT 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 64
BauI CACGAG 1 cut(s) 266
BceAI ACGGC 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 51, 277
BfaI CTAG 3 cut(s) 18, 125, 132
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 1 cut(s) 30
BoxI GACNNNNGTC 1 cut(s) 65
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpuEI CTTGAG 1 cut(s) 199
BsaI GGTCTC 2 cut(s) 51, 277
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 120, 220
BseLI CCNNNNNNNGG 1 cut(s) 253
BseNI ACTGG 2 cut(s) 120, 220
BseRI GAGGAG 1 cut(s) 269
BseYI CCCAGC 1 cut(s) 322
BshTI ACCGGT 1 cut(s) 74
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 51, 277
BsmI GAATGC 1 cut(s) 179
Bso31I GGTCTC 2 cut(s) 51, 277
Bsp1407I TGTACA 1 cut(s) 136
BspACI CCGC 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 82
BspTNI GGTCTC 2 cut(s) 51, 277
BsrFI RCCGGY 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 2 cut(s) 120, 220
BssAI RCCGGY 1 cut(s) 74
BssSI CACGAG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 282
BstAUI TGTACA 1 cut(s) 136
BstMAI GTCTC 2 cut(s) 51, 277
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 143
BstPAI GACNNNNGTC 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 213, 278
Cfr10I RCCGGY 1 cut(s) 74
Csp6I GTAC 1 cut(s) 137
CspAI ACCGGT 1 cut(s) 74
CviAII CATG 2 cut(s) 140, 287
CviJI RGCY 4 cut(s) 124, 161, 259, 322
CviKI_1 RGCY 4 cut(s) 124, 161, 259, 322
CviQI GTAC 1 cut(s) 137
Eco31I GGTCTC 2 cut(s) 51, 277
FaeI CATG 2 cut(s) 143, 290
FaiI YATR 4 cut(s) 99, 141, 226, 288
FatI CATG 2 cut(s) 139, 286
FauI CCCGC 1 cut(s) 112
FspBI CTAG 3 cut(s) 18, 125, 132
GsaI CCCAGC 1 cut(s) 326
HapII CCGG 1 cut(s) 75
Hin1II CATG 2 cut(s) 143, 290
HinfI GANTC 2 cut(s) 14, 181
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 153, 316
Hpy188III TCNNGA 2 cut(s) 50, 247
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
Hsp92II CATG 2 cut(s) 143, 290
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 6 cut(s) 88, 101, 194, 201, 260, 308
LweI GCATC 1 cut(s) 30
MaeI CTAG 3 cut(s) 18, 125, 132
MaeIII GTNAC 2 cut(s) 70, 211
MboII GAAGA 2 cut(s) 202, 205
MfeI CAATTG 1 cut(s) 102
MluCI AATT 1 cut(s) 102
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 4 cut(s) 33, 103, 247, 262
MseI TTAA 1 cut(s) 297
MspI CCGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 27
NlaIII CATG 2 cut(s) 143, 290
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 70, 211
NspI RCATGY 1 cut(s) 143
PctI GAATGC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 14
PinAI ACCGGT 1 cut(s) 74
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PshAI GACNNNNGTC 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 82
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 297
SchI GAGTC 1 cut(s) 190
SetI ASST 6 cut(s) 44, 130, 202, 213, 261, 273
SfaNI GCATC 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 119
SspMI CTAG 3 cut(s) 18, 125, 132
TaaI ACNGT 1 cut(s) 282
TasI AATT 1 cut(s) 102
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 2 cut(s) 220, 285
TseFI GTSAC 2 cut(s) 70, 211
Tsp45I GTSAC 2 cut(s) 70, 211
TspDTI ATGAA 3 cut(s) 171, 186, 275
TspRI CASTG 2 cut(s) 220, 285
XceI RCATGY 1 cut(s) 143
XspI CTAG 3 cut(s) 18, 125, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.