FvH4_3g01040

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000208
Physical Location & Seq
Reverse (-)
512391 .. 514711
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01040.t1

Sequence Viewer

Length: 807 bp
ATGGCTCAAAATGGCGGAGGCAGAAGATGGTCTCTTGAAGGAATGACTGCTCTTGTCACTGGTGGAACCAAAGGGATTGGGTATGCAATTGTGGAGGAATTGGCTGGACTAGGTGCAAGTGTATACACTTGTTCTCGAAATGAAGCCCAGCTCCATGAATGCTTGAATCAATGGAAGAAGAAGGGTTATCATCAAGTCACTGGTTCAGTCTGTGATGTGGCCTCAAAAATCCAGAGAGAGGAGCTAATACACAAGGTCTCATCACTGTTTCATGGGAAACTTAACATCCTTGTAAACAATGTTGGAACTGCTCACGGACCAACGCCAACAACTGAGTGCACCGCTGAAGAGTACTCATCCATAATGAGTACCAATCTTGAATCTACTTACAATTTGTGCCAACTAGCACATCCTCTTCTCAAAACTTCAGGAGCTGGTAACATTGTTTTTATGTCTTCTGTTGCTGGTGTGCTGTCAACTTGGGGGGGTGGGAGTGTATATGGCGCAACTAAAGGAGCAATGAATCAATTGGCCAAAAACTTGGCTTGTGAGTGGGCAAAAGACAACATTAGGATCAACAGTGTTGCACCTTGGTTCATCAGAACCCCTTTTGTTGAACCTATGTTCAATGACGACGGAAAGTCGTTAATAGAGGCTGTCATATCTCGAACCCCATTGGGACGTATAGGAGAGCCCGAAGAGGTGTCTGCCTTGGTGGCGTTTCTATGCCTTCCTGCAGCCTCATACATAACTGGCCAGACTTTTTGCGTCGATGGAGGGATGACTATCAATGGCTTCCAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

269

Amino Acids

28.66

Weight (kDa)

6.31

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 16 - 210 4.7e-49 short chain dehydrogenase
KR PF08659 16 - 180 7.7e-12 KR domain
adh_short_C2 PF13561 24 - 262 8.6e-59 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 123
AciI CCGC 2 cut(s) 15, 342
AclWI GGATC 1 cut(s) 581
AcoI YGGCCR 2 cut(s) 531, 754
AcuI CTGAAG 2 cut(s) 366, 411
AfaI GTAC 2 cut(s) 353, 370
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 5 cut(s) 38, 166, 380, 617, 628
AhdI GACNNNNNGTC 1 cut(s) 640
AluBI AGCT 3 cut(s) 151, 244, 434
AluI AGCT 3 cut(s) 151, 244, 434
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 2 cut(s) 36, 262
Alw44I GTGCAC 1 cut(s) 337
AlwI GGATC 1 cut(s) 581
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 3 cut(s) 219, 531, 754
ApaLI GTGCAC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 737
AspLEI GCGC 1 cut(s) 506
AspS9I GGNCC 1 cut(s) 317
AvaII GGWCC 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 341
BalI TGGCCA 2 cut(s) 533, 756
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 749
BccI CCATC 2 cut(s) 21, 767
BcoDI GTCTC 2 cut(s) 36, 262
BfaI CTAG 2 cut(s) 110, 404
BfmI CTRYAG 1 cut(s) 735
BglI GCCNNNNNGGC 1 cut(s) 716
BisI GCNGC 1 cut(s) 738
BlsI GCNGC 1 cut(s) 739
BmcAI AGTACT 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 317
BmeRI GACNNNNNGTC 1 cut(s) 640
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 785
BsaI GGTCTC 2 cut(s) 36, 262
BsaJI CCNNGG 2 cut(s) 590, 711
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 4 cut(s) 64, 205, 757, 799
Bse3DI GCAATG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 785
BseDI CCNNGG 2 cut(s) 590, 711
BseGI GGATG 4 cut(s) 285, 356, 409, 786
BseJI GATNNNNATC 1 cut(s) 785
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 4 cut(s) 64, 205, 757, 799
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 341
BseXI GCAGC 1 cut(s) 749
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 3 cut(s) 221, 533, 756
BsiHKAI GWGCWC 1 cut(s) 341
BslFI GGGAC 1 cut(s) 693
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 36, 262
BsmFI GGGAC 1 cut(s) 693
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 3 cut(s) 221, 533, 756
Bso31I GGTCTC 2 cut(s) 36, 262
Bsp1286I GDGCHC 2 cut(s) 341, 696
Bsp143I GATC 1 cut(s) 573
BspACI CCGC 2 cut(s) 15, 342
BspANI GGCC 3 cut(s) 221, 533, 756
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 739
BspPI GGATC 1 cut(s) 581
BspTNI GGTCTC 2 cut(s) 36, 262
BsrDI GCAATG 1 cut(s) 525
BsrI ACTGG 4 cut(s) 64, 205, 757, 799
BssECI CCNNGG 2 cut(s) 590, 711
BssMI GATC 1 cut(s) 573
BssNAI GTATAC 1 cut(s) 124
BssT1I CCWWGG 2 cut(s) 590, 711
Bst1107I GTATAC 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 267, 581
Bst6I CTCTTC 3 cut(s) 342, 420, 693
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 4 cut(s) 285, 356, 409, 786
BstHHI GCGC 1 cut(s) 506
BstKTI GATC 1 cut(s) 576
BstMAI GTCTC 2 cut(s) 36, 262
BstMBI GATC 1 cut(s) 573
BstMWI GCNNNNNNNGC 1 cut(s) 716
BstSFI CTRYAG 1 cut(s) 735
BstSLI GKGCMC 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 749
BstV2I GAAGAC 1 cut(s) 447
BstXI CCANNNNNNTGG 1 cut(s) 541
BstZ17I GTATAC 1 cut(s) 124
BsuRI GGCC 3 cut(s) 221, 533, 756
BtsCI GGATG 4 cut(s) 285, 356, 409, 786
BtsIMutI CAGTG 4 cut(s) 57, 198, 263, 586
CaiI CAGNNNCTG 1 cut(s) 434
CfoI GCGC 1 cut(s) 506
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 1 cut(s) 757
Csp6I GTAC 2 cut(s) 352, 369
CviAII CATG 2 cut(s) 155, 272
CviQI GTAC 2 cut(s) 352, 369
DdeI CTNAG 1 cut(s) 333
DpnI GATC 1 cut(s) 575
DpnII GATC 1 cut(s) 573
DriI GACNNNNNGTC 1 cut(s) 640
EaeI YGGCCR 2 cut(s) 531, 754
Eam1104I CTCTTC 3 cut(s) 342, 420, 693
Eam1105I GACNNNNNGTC 1 cut(s) 640
EarI CTCTTC 3 cut(s) 342, 420, 693
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 590, 711
Eco24I GRGCYC 1 cut(s) 696
Eco31I GGTCTC 2 cut(s) 36, 262
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 366, 411
EcoT14I CCWWGG 2 cut(s) 590, 711
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 2 cut(s) 590, 711
FaeI CATG 2 cut(s) 158, 275
FaqI GGGAC 1 cut(s) 693
FatI CATG 2 cut(s) 154, 271
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 738
FokI GGATG 4 cut(s) 272, 343, 396, 793
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 1 cut(s) 738
FspBI CTAG 2 cut(s) 110, 404
GlaI GCGC 1 cut(s) 505
GluI GCNGC 1 cut(s) 738
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 3 cut(s) 221, 533, 756
HgaI GACGC 1 cut(s) 757
HhaI GCGC 1 cut(s) 506
Hin1II CATG 2 cut(s) 158, 275
Hin6I GCGC 1 cut(s) 504
HinP1I GCGC 1 cut(s) 504
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HinfI GANTC 3 cut(s) 166, 380, 523
Hpy166II GTNNAC 4 cut(s) 124, 295, 339, 477
Hpy188I TCNGA 1 cut(s) 602
Hpy188III TCNNGA 6 cut(s) 35, 135, 232, 377, 429, 666
Hpy8I GTNNAC 4 cut(s) 124, 295, 339, 477
Hpy99I CGWCG 2 cut(s) 638, 773
HpyAV CCTTC 3 cut(s) 32, 175, 740
HpyCH4III ACNGT 2 cut(s) 267, 581
HpyCH4IV ACGT 1 cut(s) 682
HpyCH4V TGCA 5 cut(s) 86, 116, 339, 587, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 716
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 682
Hsp92II CATG 2 cut(s) 158, 275
HspAI GCGC 1 cut(s) 504
Kzo9I GATC 1 cut(s) 573
LmnI GCTCC 4 cut(s) 156, 241, 431, 515
Lsp1109I GCAGC 1 cut(s) 749
MaeI CTAG 2 cut(s) 110, 404
MaeII ACGT 1 cut(s) 682
MaeIII GTNAC 3 cut(s) 55, 196, 437
MalI GATC 1 cut(s) 575
MboI GATC 1 cut(s) 573
MboII GAAGA 7 cut(s) 36, 187, 190, 359, 407, 447, 710
MfeI CAATTG 2 cut(s) 87, 527
MhlI GDGCHC 2 cut(s) 341, 696
MlsI TGGCCA 2 cut(s) 533, 756
MluCI AATT 4 cut(s) 87, 98, 391, 527
MluNI TGGCCA 2 cut(s) 533, 756
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 9 cut(s) 11, 88, 232, 232, 423, 646, 694, 751, 770
Mox20I TGGCCA 2 cut(s) 533, 756
MscI TGGCCA 2 cut(s) 533, 756
MseI TTAA 3 cut(s) 282, 647, 805
Msp20I TGGCCA 2 cut(s) 533, 756
MspA1I CMGCKG 1 cut(s) 344
MunI CAATTG 2 cut(s) 87, 527
Mva1269I GAATGC 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 716
NdeII GATC 1 cut(s) 573
NlaIII CATG 2 cut(s) 158, 275
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 55, 196
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 3 cut(s) 166, 380, 523
PkrI GCNGC 1 cut(s) 739
PspFI CCCAGC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 739
PstNI CAGNNNCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 353, 370
RsaNI GTAC 2 cut(s) 352, 369
SaqAI TTAA 3 cut(s) 282, 647, 805
SatI GCNGC 1 cut(s) 738
Sau3AI GATC 1 cut(s) 573
Sau96I GGNCC 1 cut(s) 317
ScaI AGTACT 1 cut(s) 353
SduI GDGCHC 2 cut(s) 341, 696
SetI ASST 9 cut(s) 115, 153, 246, 258, 436, 592, 622, 685, 705
SfcI CTRYAG 1 cut(s) 735
SinI GGWCC 1 cut(s) 317
Sse9I AATT 4 cut(s) 87, 98, 391, 527
SsiI CCGC 2 cut(s) 15, 342
SspMI CTAG 2 cut(s) 110, 404
StyI CCWWGG 2 cut(s) 590, 711
TaaI ACNGT 2 cut(s) 267, 581
TaiI ACGT 1 cut(s) 685
TaqI TCGA 3 cut(s) 136, 667, 771
TasI AATT 4 cut(s) 87, 98, 391, 527
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 3 cut(s) 166, 380, 523
Tru1I TTAA 3 cut(s) 282, 647, 805
Tru9I TTAA 3 cut(s) 282, 647, 805
TscAI CASTG 4 cut(s) 64, 205, 270, 586
TseFI GTSAC 2 cut(s) 55, 196
TseI GCWGC 1 cut(s) 737
Tsp45I GTSAC 2 cut(s) 55, 196
TspDTI ATGAA 5 cut(s) 156, 171, 260, 536, 586
TspGWI ACGGA 2 cut(s) 330, 651
TspRI CASTG 4 cut(s) 64, 205, 270, 586
VneI GTGCAC 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 2 cut(s) 110, 404
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.