Rh5AG307900

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000208
Physical Location & Seq
Forward (+)
44186744 .. 44187394
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG307900.1

Sequence Viewer

Length: 552 bp
ATGAGCACCAACCTTGAATCTACTTACAATATGTGCCAACTAGCACATCCTCTTCTGAAAGCTTCAGGAGCTGGTAACATTATTCTTCTGTCTTCTGTTTGTGGTGTGGTATCAATTGGGGAGGTTGGGAGTATATACGGTGCAACTAAAGGTACGCTTTTGATTCAATTATATGTACGTATATATATTCCACAAAATTTTGCACACCACAAATTGAAGGTTAATATATGGCGGCGGTCTCTTCTCTACTACATTTCAGGAGCAATGAATCAATTGGCCAAAAACTTTGCTTGTGAGTGGGCAAAAGACAAGATTAAAGTCAACAGTGTTGCTCCTTGGTTCATCAAAACTCCTCTTGTTGAACCTATTTTGAGTGACGAAAAGTTTATGGAGGCTGTCATCTCTCGAACCCCATTAGGACGTACCGGAGAGCCTGAGGAGGTGTCTGCATTGGTGGCATTTCTATGCCTTCCGGCAGCCTCTTACATAACAGGGCAAACTATTTGCGTCGATGGAGGGATGACTGTCAATGGCTTCATGTTCCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

183

Amino Acids

20.01

Weight (kDa)

8.59

Isoelectric Point (pI)

24.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 1 - 54 9.3e-06 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 1 - 52 5e-07 short chain dehydrogenase
adh_short_C2 PF13561 87 - 175 1.3e-26 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 232, 235
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 3 cut(s) 154, 177, 424
AgsI TTSAA 4 cut(s) 17, 167, 217, 362
AluBI AGCT 2 cut(s) 62, 71
AluI AGCT 2 cut(s) 62, 71
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 243
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 1 cut(s) 196
AxyI CCTNAGG 1 cut(s) 435
BalI TGGCCA 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 488
BccI CCATC 1 cut(s) 506
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 41
BisI GCNGC 2 cut(s) 233, 477
BlsI GCNGC 2 cut(s) 234, 478
BpiI GAAGAC 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 425
Bse21I CCTNAGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 2 cut(s) 46, 525
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 426
BseRI GAGGAG 2 cut(s) 342, 452
BseXI GCAGC 1 cut(s) 488
BshFI GGCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 426, 473
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 1 cut(s) 278
Bso31I GGTCTC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 2 cut(s) 232, 235
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 335
Bst4CI ACNGT 3 cut(s) 140, 326, 526
Bst6I CTCTTC 2 cut(s) 57, 246
BstBAI YACGTR 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 435
BstF5I GGATG 2 cut(s) 46, 525
BstMAI GTCTC 1 cut(s) 243
BstMWI GCNNNNNNNGC 2 cut(s) 68, 455
BstSNI TACGTA 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 488
BstV2I GAAGAC 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 1 cut(s) 278
BtsCI GGATG 2 cut(s) 46, 525
BtsIMutI CAGTG 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 71
CseI GACGC 1 cut(s) 496
Csp6I GTAC 3 cut(s) 153, 176, 423
CviAII CATG 1 cut(s) 538
CviJI RGCY 7 cut(s) 62, 71, 278, 395, 433, 479, 534
CviKI_1 RGCY 7 cut(s) 62, 71, 278, 395, 433, 479, 534
CviQI GTAC 3 cut(s) 153, 176, 423
DdeI CTNAG 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 57, 246
EarI CTCTTC 2 cut(s) 57, 246
Eco105I TACGTA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 335
Eco31I GGTCTC 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 1 cut(s) 541
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FatI CATG 1 cut(s) 537
Fnu4HI GCNGC 2 cut(s) 233, 477
FokI GGATG 2 cut(s) 33, 532
Fsp4HI GCNGC 2 cut(s) 233, 477
FspBI CTAG 1 cut(s) 41
GluI GCNGC 2 cut(s) 233, 477
HaeIII GGCC 1 cut(s) 278
HapII CCGG 2 cut(s) 426, 473
HgaI GACGC 1 cut(s) 496
Hin1II CATG 1 cut(s) 541
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 3 cut(s) 17, 163, 268
HpaII CCGG 2 cut(s) 426, 473
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 3 cut(s) 66, 258, 405
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 512
HpyAV CCTTC 2 cut(s) 211, 479
HpyCH4III ACNGT 3 cut(s) 140, 326, 526
HpyCH4IV ACGT 2 cut(s) 178, 421
HpyCH4V TGCA 3 cut(s) 143, 203, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 455
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 2 cut(s) 178, 421
Hsp92II CATG 1 cut(s) 541
LmnI GCTCC 3 cut(s) 68, 260, 337
LpnPI CCDG 7 cut(s) 51, 57, 243, 439, 447, 477, 486
Lsp1109I GCAGC 1 cut(s) 488
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 178, 421
MaeIII GTNAC 2 cut(s) 74, 374
MboII GAAGA 4 cut(s) 44, 77, 84, 233
MfeI CAATTG 2 cut(s) 114, 272
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 5 cut(s) 114, 167, 196, 212, 272
MluNI TGGCCA 1 cut(s) 278
MnlI CCTC 8 cut(s) 60, 115, 363, 385, 430, 433, 490, 509
Mox20I TGGCCA 1 cut(s) 278
MscI TGGCCA 1 cut(s) 278
MseI TTAA 2 cut(s) 222, 315
MslI CAYNNNNRTG 1 cut(s) 463
Msp20I TGGCCA 1 cut(s) 278
MspI CCGG 2 cut(s) 426, 473
MunI CAATTG 2 cut(s) 114, 272
MwoI GCNNNNNNNGC 2 cut(s) 68, 455
NlaIII CATG 1 cut(s) 541
NmuCI GTSAC 1 cut(s) 374
PfeI GAWTC 3 cut(s) 17, 163, 268
PkrI GCNGC 2 cut(s) 234, 478
Ppu21I YACGTR 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 3 cut(s) 154, 177, 424
RsaNI GTAC 3 cut(s) 153, 176, 423
RseI CAYNNNNRTG 1 cut(s) 463
SaqAI TTAA 2 cut(s) 222, 315
SatI GCNGC 2 cut(s) 233, 477
SduI GDGCHC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 463
SnaBI TACGTA 1 cut(s) 179
Sse9I AATT 5 cut(s) 114, 167, 196, 212, 272
SsiI CCGC 2 cut(s) 232, 235
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 3 cut(s) 140, 326, 526
TaiI ACGT 2 cut(s) 181, 424
TaqI TCGA 2 cut(s) 406, 510
TasI AATT 5 cut(s) 114, 167, 196, 212, 272
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 3 cut(s) 17, 163, 268
Tru1I TTAA 2 cut(s) 222, 315
Tru9I TTAA 2 cut(s) 222, 315
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 476
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 3 cut(s) 281, 331, 526
TspRI CASTG 1 cut(s) 331
XapI RAATTY 1 cut(s) 196
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.