Rh4AG150600

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000208
Physical Location & Seq
Reverse (-)
37920269 .. 38128279
208011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG150600.1

Sequence Viewer

Length: 504 bp
ATGATCGAAGTTGAGAGAAAGATGGCGACAACAGATGTCAATAGCAGAAACAGGAGATGGTCTCTTGAGGGGATGACTGCACTTGTCACCGGTGGAACCAAAGGGATTGGGTATGCTATTGTGGAGGAATTGGCTGGACTAGGGGCAAGCGTACATACTTGTGCTAGAAATGAAGTCCTACTCAATGACTGCTTGAGTCAGTGGAAGTTGAAGGGTTTTCATCAAGTTACTGGTTCGATCTGTGATATGGTCTTAAAAACCCAACGAGAGGAGCTAATACACAAGGTCTCATTACTGTTTAATGGGAAACTTAACATCCTTTATCTGAATGATGTAAAAACTTTGGAGGCCGTGAACTCTCGAACCCCTTTAGGACGGCCTGGAGAGCCAGAAGAGGTGTCTGCATTGGTAGCATTTTTGTGCCTCCCCGCAGCCTCTTACATAACTGGACAGACTATTTGCATCGACGGAGGGATGACTATCAATGGCTTTTCATTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

167

Amino Acids

18.22

Weight (kDa)

6.3

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 26 - 110 1.3e-10 short chain dehydrogenase
adh_short_C2 PF13561 113 - 160 9.7e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 429
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 268
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 66, 292
AoxI GGCC 2 cut(s) 348, 377
ApeKI GCWGC 1 cut(s) 431
ArsI GACNNNNNNTTYG 2 cut(s) 441, 473
AsiGI ACCGGT 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 79
BbvI GCAGC 1 cut(s) 443
BccI CCATC 2 cut(s) 16, 51
BceAI ACGGC 2 cut(s) 335, 392
BciT130I CCWGG 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 66, 292
BfaI CTAG 2 cut(s) 140, 165
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme1390I CCNGG 1 cut(s) 381
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 471
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 1 cut(s) 402
BpuEI CTTGAG 2 cut(s) 86, 214
BsaBI GATNNNNATC 1 cut(s) 479
BsaI GGTCTC 2 cut(s) 66, 292
BsaWI WCCGGW 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 235, 451
Bse8I GATNNNNATC 1 cut(s) 479
BseBI CCWGG 1 cut(s) 381
BseGI GGATG 3 cut(s) 78, 315, 480
BseJI GATNNNNATC 1 cut(s) 479
BseLI CCNNNNNNNGG 1 cut(s) 268
BseNI ACTGG 2 cut(s) 235, 451
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 443
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 2 cut(s) 350, 379
BshTI ACCGGT 1 cut(s) 89
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 66, 292
BsnI GGCC 2 cut(s) 350, 379
Bso31I GGTCTC 2 cut(s) 66, 292
Bsp143I GATC 2 cut(s) 3, 237
BspACI CCGC 1 cut(s) 429
BspANI GGCC 2 cut(s) 350, 379
BspLI GGNNCC 1 cut(s) 97
BspTNI GGTCTC 2 cut(s) 66, 292
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 2 cut(s) 235, 451
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 2 cut(s) 3, 237
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 148
BstF5I GGATG 3 cut(s) 78, 315, 480
BstKTI GATC 2 cut(s) 6, 240
BstMAI GTCTC 2 cut(s) 66, 292
BstMBI GATC 2 cut(s) 3, 237
BstMWI GCNNNNNNNGC 2 cut(s) 385, 410
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 379
BstV1I GCAGC 1 cut(s) 443
BsuRI GGCC 2 cut(s) 350, 379
BtsCI GGATG 3 cut(s) 78, 315, 480
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 89
Csp6I GTAC 1 cut(s) 152
CspAI ACCGGT 1 cut(s) 89
CviJI RGCY 7 cut(s) 134, 274, 350, 379, 388, 434, 489
CviKI_1 RGCY 7 cut(s) 134, 274, 350, 379, 388, 434, 489
CviQI GTAC 1 cut(s) 152
DpnI GATC 2 cut(s) 5, 239
DpnII GATC 2 cut(s) 3, 237
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco31I GGTCTC 2 cut(s) 66, 292
EcoRII CCWGG 1 cut(s) 379
FaiI YATR 4 cut(s) 114, 156, 248, 443
FauI CCCGC 1 cut(s) 436
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 3 cut(s) 85, 302, 487
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 2 cut(s) 140, 165
GluI GCNGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 2 cut(s) 350, 379
HapII CCGG 1 cut(s) 90
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 1 cut(s) 327
Hpy188III TCNNGA 2 cut(s) 65, 360
Hpy8I GTNNAC 1 cut(s) 355
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 80, 404, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 410
Kzo9I GATC 2 cut(s) 3, 237
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 8 cut(s) 37, 103, 120, 216, 366, 393, 402, 432
Lsp1109I GCAGC 1 cut(s) 443
LweI GCATC 1 cut(s) 471
MaeI CTAG 2 cut(s) 140, 165
MaeIII GTNAC 2 cut(s) 85, 226
MalI GATC 2 cut(s) 5, 239
MboI GATC 2 cut(s) 3, 237
MboII GAAGA 1 cut(s) 404
MluCI AATT 1 cut(s) 128
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 8 cut(s) 61, 118, 262, 340, 388, 434, 445, 464
MseI TTAA 3 cut(s) 254, 300, 312
MslI CAYNNNNRTG 3 cut(s) 159, 418, 499
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 385, 410
NdeII GATC 2 cut(s) 3, 237
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 85
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 1 cut(s) 433
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 97
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
RseI CAYNNNNRTG 3 cut(s) 159, 418, 499
SaqAI TTAA 3 cut(s) 254, 300, 312
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 2 cut(s) 3, 237
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 381
SetI ASST 3 cut(s) 276, 288, 399
SfaNI GCATC 1 cut(s) 471
SgrAI CRCCGGYG 1 cut(s) 89
SmiMI CAYNNNNRTG 3 cut(s) 159, 418, 499
SmlI CTYRAG 2 cut(s) 65, 193
SmoI CTYRAG 2 cut(s) 65, 193
Sse9I AATT 1 cut(s) 128
SsiI CCGC 1 cut(s) 429
SspMI CTAG 2 cut(s) 140, 165
StyD4I CCNGG 1 cut(s) 379
TaaI ACNGT 1 cut(s) 297
TaqI TCGA 4 cut(s) 6, 236, 361, 465
TasI AATT 1 cut(s) 128
Tru1I TTAA 3 cut(s) 254, 300, 312
Tru9I TTAA 3 cut(s) 254, 300, 312
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 186, 209, 483
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 1 cut(s) 206
XspI CTAG 2 cut(s) 140, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.