RchiOBHm_Chr2g0131701

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000208
Physical Location & Seq
Reverse (-)
48070514 .. 48072292
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50303

Sequence Viewer

Length: 978 bp
ATGATTGACATGTCTGGCCGATATACCATGGACGTCCTTTTGCATATTTCATATATATCTACAACTTTTGGTTGCTCAATATTAATCCTAACCACATTAAAAACTTTGAAGTACTTGCAACAGCCTGGATCTAAAGTGATCAAAGTTGAGAAAGAGATGGCGAGAACAGATATCAATAGCAGAGACAGGAGATGGTCTCTTGAGGGGATGACTGCACTCGTCACCGGTGGAACCAAAGGGATTGGGTATGCTATTGTGGAGGAACTGGCTGGACTAGGTGCAAGTGTACATACTTGTTCTCGGAATGAAGCCCAACTCAACGACTGCTTGAGTCAGTGGAAGAAGAAGGGTTTTCATCAAGTCACTGGTTCAGTCTGTGATGTCGTCTCAAAAGGCCAAAGAGAGGAGCTAATAAATAAGGTCTCATCAATGTTTAATGGCAAACTTAACATCCTTATAAACAATGTGGGAACAAATATACCAAAACCAACAACTGAGTACACAGCTGAAGATTACTCATTTATCATGAGTACCAATCTTGAATCCACATTCCACTTGTGCCAACTTGCACATCCTCTTCTCAAAGATTCAGGAGCTGGTAACATAATTCTTTTGTCATCTGTTGCTGGTGTGGTATCACTTGGGATGGTTGGGAGTATAAATGCTGCCACTAAAGGAGCAATAAATCAATTGGCAAAAAACTTGGCGTGTGAATGGGCGAAAGATAAGATAAGGACTAACAGTGTTGCACCTTGGGTCATCAGAACTCCCCTCGCTGAACCTTTTCTAAATGATGCAAAAACCTTGGAGGTCATGAACTCTAGAACCCCTTTAGGACGGCCTGGAGAGCCAGAAGAGGTGTCTGCATTGGTAGCATTTTTGTGCCTCCCCGCAGCCTCTTACATAACTGGACAGACTATTTGCGTCGATGGAGGGATGACTATCAATGGTTTTACCATTCCAATGAGCATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

325

Amino Acids

35.14

Weight (kDa)

8.06

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 71 - 262 2.6e-44 short chain dehydrogenase
KR PF08659 71 - 249 4.8e-10 KR domain
adh_short_C2 PF13561 79 - 314 1.3e-56 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 458
AatII GACGTC 1 cut(s) 36
AciI CCGC 1 cut(s) 891
AclWI GGATC 1 cut(s) 136
AcoI YGGCCR 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 528
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 4 cut(s) 113, 288, 500, 532
AfiI CCNNNNNNNGG 1 cut(s) 403
AflIII ACRYGT 1 cut(s) 9
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 2 cut(s) 109, 542
AjnI CCWGG 2 cut(s) 124, 841
AluBI AGCT 3 cut(s) 409, 506, 596
AluI AGCT 3 cut(s) 409, 506, 596
Alw26I GTCTC 4 cut(s) 177, 201, 391, 427
AlwI GGATC 1 cut(s) 136
AlwNI CAGNNNCTG 1 cut(s) 596
AoxI GGCC 3 cut(s) 16, 394, 839
ApeKI GCWGC 2 cut(s) 665, 893
ArsI GACNNNNNNTTYG 2 cut(s) 903, 935
AseI ATTAAT 2 cut(s) 83, 972
AsiGI ACCGGT 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 783
AsuHPI GGTGA 1 cut(s) 214
BbvI GCAGC 2 cut(s) 652, 905
BccI CCATC 4 cut(s) 151, 186, 640, 923
BceAI ACGGC 1 cut(s) 854
BciT130I CCWGG 2 cut(s) 126, 843
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 4 cut(s) 177, 201, 391, 427
BfaI CTAG 2 cut(s) 275, 822
BisI GCNGC 2 cut(s) 666, 894
BlsI GCNGC 2 cut(s) 667, 895
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 2 cut(s) 126, 843
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 126, 843
BmsI GCATC 1 cut(s) 784
BplI GAGNNNNNCTC 2 cut(s) 181, 213
BpmI CTGGAG 1 cut(s) 864
BpuEI CTTGAG 2 cut(s) 221, 349
BsaBI GATNNNNATC 1 cut(s) 941
BsaHI GRCGYC 1 cut(s) 33
BsaI GGTCTC 2 cut(s) 201, 427
BsaJI CCNNGG 3 cut(s) 27, 752, 804
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 3 cut(s) 270, 370, 913
Bse8I GATNNNNATC 1 cut(s) 941
BseBI CCWGG 2 cut(s) 126, 843
BseDI CCNNGG 3 cut(s) 27, 752, 804
BseGI GGATG 5 cut(s) 213, 450, 571, 651, 942
BseJI GATNNNNATC 1 cut(s) 941
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 3 cut(s) 270, 370, 913
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 2 cut(s) 652, 905
BsgI GTGCAG 1 cut(s) 198
BshFI GGCC 3 cut(s) 18, 396, 841
BshTI ACCGGT 1 cut(s) 224
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 4 cut(s) 177, 201, 391, 427
BsmBI CGTCTC 1 cut(s) 391
BsnI GGCC 3 cut(s) 18, 396, 841
Bso31I GGTCTC 2 cut(s) 201, 427
Bsp1407I TGTACA 1 cut(s) 286
Bsp143I GATC 2 cut(s) 128, 138
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 1 cut(s) 891
BspANI GGCC 3 cut(s) 18, 396, 841
BspCNI CTCAG 1 cut(s) 487
BspHI TCATGA 2 cut(s) 525, 813
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 136
BspTNI GGTCTC 2 cut(s) 201, 427
BsrFI RCCGGY 1 cut(s) 224
BsrGI TGTACA 1 cut(s) 286
BsrI ACTGG 3 cut(s) 270, 370, 913
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 27, 752, 804
BssMI GATC 2 cut(s) 128, 138
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 3 cut(s) 27, 752, 804
Bst2UI CCWGG 2 cut(s) 126, 843
Bst4CI ACNGT 1 cut(s) 743
Bst6I CTCTTC 2 cut(s) 582, 849
BstACI GRCGYC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 495
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 5 cut(s) 213, 450, 571, 651, 942
BstKTI GATC 2 cut(s) 131, 141
BstMAI GTCTC 4 cut(s) 177, 201, 391, 427
BstMBI GATC 2 cut(s) 128, 138
BstMWI GCNNNNNNNGC 2 cut(s) 847, 872
BstNI CCWGG 2 cut(s) 126, 843
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 2 cut(s) 124, 841
BstV1I GCAGC 2 cut(s) 652, 905
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 3 cut(s) 18, 396, 841
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 5 cut(s) 213, 450, 571, 651, 942
BtsIMutI CAGTG 3 cut(s) 341, 363, 748
CaiI CAGNNNCTG 1 cut(s) 596
CciI TCATGA 2 cut(s) 525, 813
Cfr10I RCCGGY 1 cut(s) 224
CseI GACGC 1 cut(s) 913
Csp6I GTAC 4 cut(s) 112, 287, 499, 531
CspAI ACCGGT 1 cut(s) 224
CviAII CATG 4 cut(s) 10, 28, 526, 814
CviQI GTAC 4 cut(s) 112, 287, 499, 531
DdeI CTNAG 1 cut(s) 495
DpnI GATC 2 cut(s) 130, 140
DpnII GATC 2 cut(s) 128, 138
EaeI YGGCCR 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 582, 849
EarI CTCTTC 2 cut(s) 582, 849
Eco130I CCWWGG 3 cut(s) 27, 752, 804
Eco31I GGTCTC 2 cut(s) 201, 427
Eco32I GATATC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 528
EcoRII CCWGG 2 cut(s) 124, 841
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 3 cut(s) 27, 752, 804
ErhI CCWWGG 3 cut(s) 27, 752, 804
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 4 cut(s) 13, 31, 529, 817
FatI CATG 4 cut(s) 9, 27, 525, 813
FauI CCCGC 1 cut(s) 898
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 666, 894
FokI GGATG 5 cut(s) 220, 437, 558, 658, 949
Fsp4HI GCNGC 2 cut(s) 666, 894
FspBI CTAG 2 cut(s) 275, 822
GluI GCNGC 2 cut(s) 666, 894
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 3 cut(s) 18, 396, 841
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 913
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 4 cut(s) 13, 31, 529, 817
HinfI GANTC 3 cut(s) 331, 542, 587
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 287, 501
Hpy188I TCNGA 2 cut(s) 303, 764
Hpy188III TCNNGA 6 cut(s) 200, 526, 539, 591, 814, 822
Hpy8I GTNNAC 2 cut(s) 287, 501
Hpy99I CGWCG 1 cut(s) 929
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 743
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 8 cut(s) 43, 118, 215, 281, 569, 749, 797, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 847, 872
HpyF3I CTNAG 1 cut(s) 495
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 4 cut(s) 13, 31, 529, 817
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 128, 138
LmnI GCTCC 3 cut(s) 406, 593, 677
Lsp1109I GCAGC 2 cut(s) 652, 905
LweI GCATC 1 cut(s) 784
MaeI CTAG 2 cut(s) 275, 822
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 3 cut(s) 220, 361, 599
MalI GATC 2 cut(s) 130, 140
MboI GATC 2 cut(s) 128, 138
MboII GAAGA 5 cut(s) 352, 355, 521, 569, 866
MfeI CAATTG 1 cut(s) 689
MflI RGATCY 1 cut(s) 128
MluCI AATT 3 cut(s) 606, 689, 973
MlyI GAGTC 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 783
MseI TTAA 6 cut(s) 83, 98, 435, 447, 972, 976
MslI CAYNNNNRTG 2 cut(s) 880, 962
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 126, 843
MunI CAATTG 1 cut(s) 689
MvaI CCWGG 2 cut(s) 126, 843
MwoI GCNNNNNNNGC 2 cut(s) 847, 872
NcoI CCATGG 1 cut(s) 27
NdeII GATC 2 cut(s) 128, 138
NlaIII CATG 4 cut(s) 13, 31, 529, 817
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 220, 361
NspI RCATGY 1 cut(s) 13
PacI TTAATTAA 1 cut(s) 976
PagI TCATGA 2 cut(s) 525, 813
PciI ACATGT 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 783
PfeI GAWTC 2 cut(s) 542, 587
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 2 cut(s) 667, 895
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PscI ACATGT 1 cut(s) 9
PshBI ATTAAT 2 cut(s) 83, 972
PsiI TTATAA 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 124, 841
PspGI CCWGG 2 cut(s) 124, 841
PspN4I GGNNCC 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 4 cut(s) 113, 288, 500, 532
RsaNI GTAC 4 cut(s) 112, 287, 499, 531
RseI CAYNNNNRTG 2 cut(s) 880, 962
SaqAI TTAA 6 cut(s) 83, 98, 435, 447, 972, 976
SatI GCNGC 2 cut(s) 666, 894
Sau3AI GATC 2 cut(s) 128, 138
ScaI AGTACT 1 cut(s) 113
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 2 cut(s) 126, 843
SfaNI GCATC 1 cut(s) 784
SgrAI CRCCGGYG 1 cut(s) 224
SmiMI CAYNNNNRTG 2 cut(s) 880, 962
SmlI CTYRAG 2 cut(s) 200, 328
SmoI CTYRAG 2 cut(s) 200, 328
Sse9I AATT 3 cut(s) 606, 689, 973
SsiI CCGC 1 cut(s) 891
SspI AATATT 1 cut(s) 81
SspMI CTAG 2 cut(s) 275, 822
StyD4I CCNGG 2 cut(s) 124, 841
StyI CCWWGG 3 cut(s) 27, 752, 804
TaaI ACNGT 1 cut(s) 743
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 927
TasI AATT 3 cut(s) 606, 689, 973
TatI WGTACW 3 cut(s) 111, 286, 498
TfiI GAWTC 2 cut(s) 542, 587
Tru1I TTAA 6 cut(s) 83, 98, 435, 447, 972, 976
Tru9I TTAA 6 cut(s) 83, 98, 435, 447, 972, 976
TscAI CASTG 3 cut(s) 341, 370, 748
TseFI GTSAC 2 cut(s) 220, 361
TseI GCWGC 2 cut(s) 665, 893
Tsp45I GTSAC 2 cut(s) 220, 361
TspDTI ATGAA 4 cut(s) 39, 321, 344, 830
TspRI CASTG 3 cut(s) 341, 370, 748
VspI ATTAAT 2 cut(s) 83, 972
XbaI TCTAGA 1 cut(s) 821
XceI RCATGY 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 783
XspI CTAG 2 cut(s) 275, 822
ZraI GACGTC 1 cut(s) 34
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.