Rh2DG376100

Tropinone reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000208
Physical Location & Seq
Reverse (-)
53780545 .. 53788093
7549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG376100.1

Sequence Viewer

Length: 393 bp
ATGGCGAGAACAGATATCAATAGCAGAGACAGGAGATGGTCTCTTGAGGGGATGACTGCACTCGTCACCGGTGGAACCAAAGGGATTGGGTATGCTATTGTGGAGGAACTGGCTGGACTAGGTGCAAGTGTACATACTTGTTCTCGGAATGAAGCCCAACTCAACGACTGCTTGAGTCAGTGGAAGAAGAAGGGTTTTCATCAAGTCACTGGTTCAGTCTGTGATGTCGTCTCAAAAGGCCAAAGAGAGGAGCTAATAAATAAGGTCTCATCAATGTTTAATGGCAAACTTAACATCCTTGTAAGTATTCCATATATTCCTACCATCTATTACAATAACAACCCCGTTATTTATGATTGCTGGGGCAATATGCAAAATATCATTTGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

130

Amino Acids

14.43

Weight (kDa)

8.3

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 19 - 101 1.2e-14 short chain dehydrogenase
adh_short_C2 PF13561 27 - 102 2.2e-08 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 247
AgeI ACCGGT 1 cut(s) 68
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw26I GTCTC 4 cut(s) 21, 45, 235, 271
AoxI GGCC 1 cut(s) 238
AsiGI ACCGGT 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 58
BccI CCATC 2 cut(s) 30, 332
BcoDI GTCTC 4 cut(s) 21, 45, 235, 271
BfaI CTAG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpuEI CTTGAG 2 cut(s) 65, 193
BsaI GGTCTC 2 cut(s) 45, 271
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 114, 214
BseGI GGATG 2 cut(s) 57, 294
BseLI CCNNNNNNNGG 1 cut(s) 247
BseNI ACTGG 2 cut(s) 114, 214
BseRI GAGGAG 1 cut(s) 263
BseYI CCCAGC 1 cut(s) 360
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 240
BshTI ACCGGT 1 cut(s) 68
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 4 cut(s) 21, 45, 235, 271
BsmBI CGTCTC 1 cut(s) 235
BsnI GGCC 1 cut(s) 240
Bso31I GGTCTC 2 cut(s) 45, 271
Bsp1407I TGTACA 1 cut(s) 130
BspANI GGCC 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 76
BspTNI GGTCTC 2 cut(s) 45, 271
BsrFI RCCGGY 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 130
BsrI ACTGG 2 cut(s) 114, 214
BssAI RCCGGY 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 130
BstF5I GGATG 2 cut(s) 57, 294
BstMAI GTCTC 4 cut(s) 21, 45, 235, 271
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 2 cut(s) 57, 294
BtsIMutI CAGTG 2 cut(s) 185, 207
Cfr10I RCCGGY 1 cut(s) 68
Csp6I GTAC 1 cut(s) 131
CspAI ACCGGT 1 cut(s) 68
CviJI RGCY 4 cut(s) 113, 155, 240, 253
CviKI_1 RGCY 4 cut(s) 113, 155, 240, 253
CviQI GTAC 1 cut(s) 131
Eco31I GGTCTC 2 cut(s) 45, 271
Eco32I GATATC 1 cut(s) 16
EcoRV GATATC 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 235
FaiI YATR 8 cut(s) 93, 135, 313, 315, 354, 371, 389, 391
FokI GGATG 2 cut(s) 64, 281
FspBI CTAG 1 cut(s) 119
GsaI CCCAGC 1 cut(s) 364
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 69
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 4 cut(s) 59, 125, 373, 387
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 6 cut(s) 16, 82, 95, 99, 195, 346
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 64, 205
MboII GAAGA 2 cut(s) 196, 199
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 3 cut(s) 40, 97, 241
MseI TTAA 2 cut(s) 279, 291
MspI CCGG 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 64, 205
PinAI ACCGGT 1 cut(s) 68
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 76
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 279, 291
SchI GAGTC 1 cut(s) 184
SetI ASST 3 cut(s) 124, 255, 267
SgrAI CRCCGGYG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 44, 172
SmoI CTYRAG 2 cut(s) 44, 172
SspMI CTAG 1 cut(s) 119
TatI WGTACW 1 cut(s) 130
Tru1I TTAA 2 cut(s) 279, 291
Tru9I TTAA 2 cut(s) 279, 291
TscAI CASTG 2 cut(s) 185, 214
TseFI GTSAC 2 cut(s) 64, 205
Tsp45I GTSAC 2 cut(s) 64, 205
TspDTI ATGAA 2 cut(s) 165, 188
TspRI CASTG 2 cut(s) 185, 214
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.