FvH4_3g36955

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000208
Physical Location & Seq
Forward (+)
31663975 .. 31665457
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36955.t1

Sequence Viewer

Length: 687 bp
ATGTCATCGTTATTTAAATGTGCTATTGTGGAGGACTTGGCGAGGCTAGGTGCAAAGGTCCATACTTGTGCTCGGAATGAAGTCCAACTCAATGAGCGATTGAGTCAATGGAAGACCAAGGGTTTTAAAGTCACTGGTTCGGTCTGTGATTTGGTCTCAAAGCCCCAACAAGAGGAGCTCATGTACAAGCCCACAACTGACTACACAGCTGAAGATTACTCATTTCTTATGGGAACCAATCTTGAATCTTCTTATAGTATGTGCCAACTCGCACATCCTCTCCTCAAAGCTTCAGGAGCTGGTAAAATTGTTCTTATATCATCTATTGCTGGTGTGGTATCAGTTGGGGGATGTGATAGTATCTACTCTGCCAGTAAAGGAGCAATTAACCAATTGGCAAAAGTCTTGGCTTGCGAGTGGCGAAAAGACAAGATTAGGATCAACAGTGTTTCACCTGGGTTCATACGAACTCCCTTGACTGAAGATACTACTTTATCACTCAATAACCAAACAATGCTTAAGGCTATTAACACTCGAACACCTTTAGGACGCCCTGGTGAGCCGGAAGAGATTTCTTCCTTTGTGACATTTTTGTGCATCCCTGCAGCTTCATACATAACTGGGCAGACTATTTGCATTGACGGAGGGATGACTGGTAATGGCGTAAGCTTATGTCGTCAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

229

Amino Acids

24.59

Weight (kDa)

8.34

Isoelectric Point (pI)

23.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 63 - 218 1e-40 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 63 - 163 6.7e-23 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 446
AcuI CTGAAG 3 cut(s) 231, 276, 501
AcyI GRCGYC 1 cut(s) 550
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 172
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 1 cut(s) 245
AjnI CCWGG 2 cut(s) 454, 553
AluBI AGCT 6 cut(s) 178, 209, 290, 299, 608, 669
AluI AGCT 6 cut(s) 178, 209, 290, 299, 608, 669
Alw21I GWGCWC 2 cut(s) 73, 180
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 1 cut(s) 446
AlwNI CAGNNNCTG 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 605
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 444, 569
AvaII GGWCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 2 cut(s) 73, 180
BbvI GCAGC 1 cut(s) 617
BciT130I CCWGG 2 cut(s) 456, 555
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 518
BisI GCNGC 1 cut(s) 606
BlsI GCNGC 1 cut(s) 607
Bme1390I CCNGG 2 cut(s) 456, 555
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 2 cut(s) 456, 555
BmrI ACTGGG 1 cut(s) 630
BmsI GCATC 1 cut(s) 606
BmuI ACTGGG 1 cut(s) 630
BpiI GAAGAC 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 437
BsaHI GRCGYC 1 cut(s) 550
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 3 cut(s) 117, 455, 553
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 4 cut(s) 139, 372, 625, 658
Bse8I GATNNNNATC 1 cut(s) 437
BseBI CCWGG 2 cut(s) 456, 555
BseDI CCNNGG 3 cut(s) 117, 455, 553
BseGI GGATG 4 cut(s) 274, 356, 597, 654
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 1 cut(s) 172
BseNI ACTGG 4 cut(s) 139, 372, 625, 658
BseRI GAGGAG 2 cut(s) 188, 272
BseXI GCAGC 1 cut(s) 617
BsiHKAI GWGCWC 2 cut(s) 73, 180
BsiSI CCGG 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 160
Bso31I GGTCTC 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 73, 180
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 235
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 1 cut(s) 446
BspTI CTTAAG 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 4 cut(s) 139, 372, 625, 658
BssECI CCNNGG 3 cut(s) 117, 455, 553
BssMI GATC 1 cut(s) 438
BssNI GRCGYC 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 2 cut(s) 456, 555
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 1 cut(s) 550
BstAFI CTTAAG 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 412
BstF5I GGATG 4 cut(s) 274, 356, 597, 654
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 2 cut(s) 456, 555
BstSCI CCNGG 2 cut(s) 454, 553
BstSFI CTRYAG 1 cut(s) 603
BstV1I GCAGC 1 cut(s) 617
BstV2I GAAGAC 1 cut(s) 119
BtsCI GGATG 4 cut(s) 274, 356, 597, 654
BtsIMutI CAGTG 2 cut(s) 132, 451
Cac8I GCNNGC 1 cut(s) 412
CaiI CAGNNNCTG 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 58
CseI GACGC 1 cut(s) 558
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 181
CviQI GTAC 1 cut(s) 184
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
DraI TTTAAA 2 cut(s) 16, 127
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 3 cut(s) 231, 276, 501
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 454, 553
EcoT14I CCWWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 184
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 606
FokI GGATG 4 cut(s) 261, 363, 584, 661
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 606
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 606
HapII CCGG 1 cut(s) 563
HgaI GACGC 1 cut(s) 558
Hin1I GRCGYC 1 cut(s) 550
Hin1II CATG 1 cut(s) 184
HindIII AAGCTT 2 cut(s) 288, 667
HinfI GANTC 2 cut(s) 103, 245
HpaII CCGG 1 cut(s) 563
HphI GGTGA 2 cut(s) 444, 569
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 242, 294
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4V TGCA 4 cut(s) 53, 597, 605, 636
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 550
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 1 cut(s) 438
LmnI GCTCC 3 cut(s) 175, 296, 380
Lsp1109I GCAGC 1 cut(s) 617
LweI GCATC 1 cut(s) 606
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 130, 583
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 6 cut(s) 124, 224, 240, 494, 567, 578
MfeI CAATTG 1 cut(s) 392
MhlI GDGCHC 2 cut(s) 73, 180
MluCI AATT 3 cut(s) 306, 384, 392
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 6 cut(s) 25, 36, 166, 288, 293, 638
MseI TTAA 5 cut(s) 15, 126, 387, 519, 528
MslI CAYNNNNRTG 2 cut(s) 66, 592
MspA1I CMGCKG 1 cut(s) 209
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 2 cut(s) 456, 555
MunI CAATTG 1 cut(s) 392
MvaI CCWGG 2 cut(s) 456, 555
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 1 cut(s) 438
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 130, 583
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 1 cut(s) 607
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 454, 553
PspGI CCWGG 2 cut(s) 454, 553
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 2 cut(s) 66, 592
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 5 cut(s) 15, 126, 387, 519, 528
SatI GCNGC 1 cut(s) 606
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 2 cut(s) 456, 555
SduI GDGCHC 2 cut(s) 73, 180
SfaNI GCATC 1 cut(s) 606
SfcI CTRYAG 1 cut(s) 603
SinI GGWCC 1 cut(s) 58
SmiI ATTTAAAT 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 66, 592
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 3 cut(s) 306, 384, 392
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 454, 553
StyI CCWWGG 1 cut(s) 117
SwaI ATTTAAAT 1 cut(s) 16
TaaI ACNGT 1 cut(s) 446
TaqI TCGA 1 cut(s) 535
TaqII GACCGA 1 cut(s) 130
TasI AATT 3 cut(s) 306, 384, 392
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 5 cut(s) 15, 126, 387, 519, 528
Tru9I TTAA 5 cut(s) 15, 126, 387, 519, 528
TscAI CASTG 2 cut(s) 139, 451
TseFI GTSAC 2 cut(s) 130, 583
TseI GCWGC 1 cut(s) 605
Tsp45I GTSAC 2 cut(s) 130, 583
TspDTI ATGAA 3 cut(s) 93, 451, 600
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 2 cut(s) 139, 451
Vha464I CTTAAG 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 58
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.