MD11G1093400.v1.1

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000208
Physical Location & Seq
Reverse (-)
7775711 .. 7782121
6411 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1093400.v1.1.491

Sequence Viewer

Length: 816 bp
ATGGCGAATGCAGAGATCAATGGCAGAGGTCGCAGATGGTCTCTTGAGGGAAAGACTGCTCTTGTCACTGGTGGAACCAAAGGGATGGGGTGTGCTATTGTGGAGGAACTGGCGGGGCTAGGTGCAGCTGTTCATACTTGCTCTCGGAGTCAAGGGCAGCTGGATGACTGCTTGAGTCAATGGAAGGCCAAGGGTTTTCATCAAGTCACTGGTTCAATCTGTGATGTGTCTTCAAGAGCACAAAGGGAGGAGTTAATAAACAAGATCTCATCACAATTTAACGGAAAACTTAACATCCTTATAAACAATGTGGGAACTTCCGAATCAAAACCAACAGTTGATTGCACAGCTGAAGATTACGCATTTGTTACAACTACAAATCTTGAATCTGCTTACAATCTGTCCCAATTTGCGCATCCTCTTCTGAAAGCTTCAGGAGCTGGTAACATTGTTTTTGTATCATCTATTGCTGGGGTGGTATCAGTTGCAGGGATTGGAAGTGTATATGCTGCGACTAAAGGAGCAATAATTTCGTTGGCAAGATCCTTGGCTTGTGAGTGGGGAAAAGAAAACATAAGGGTCAACAGTGTAGCACCTTGGTTCATTCGAACACCCCTCTCTGCACCTTTTCTCAGTGTGGAGAAATTTTCGAATGCGATCAACGCCCGAACCCCTTTAGGACGTCCTGGAGAGCCAGAAGAGGTTGCAGCTGTGGTGTCCTTTCTATGCCTCCCAGCAGCTTCTTACGTAACTGGGCAGACTATTGGCATTGATGGGGGAATGAGCGTCAATGGCTTCCCTTTCCCAGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

272

Amino Acids

28.41

Weight (kDa)

6.82

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDR PF23441 17 - 261 4.7e-06 SDR-like rossmann domain
adh_short PF00106 18 - 208 2.9e-46 short chain dehydrogenase
KR PF08659 19 - 182 3e-13 KR domain
adh_short_C2 PF13561 27 - 262 3.6e-58 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AatII GACGTC 1 cut(s) 685
Acc16I TGCGCA 1 cut(s) 414
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 537
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 2 cut(s) 372, 417
AcyI GRCGYC 1 cut(s) 682
AgsI TTSAA 3 cut(s) 216, 234, 386
AjnI CCWGG 1 cut(s) 685
AluBI AGCT 7 cut(s) 128, 160, 350, 431, 440, 710, 740
AluI AGCT 7 cut(s) 128, 160, 350, 431, 440, 710, 740
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 537
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 5 cut(s) 125, 157, 509, 707, 737
ApoI RAATTY 1 cut(s) 644
AspLEI GCGC 1 cut(s) 415
AsuII TTCGAA 2 cut(s) 607, 650
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 5 cut(s) 137, 169, 496, 719, 749
BccI CCATC 3 cut(s) 30, 79, 767
BcgI CGANNNNNNTGC 2 cut(s) 513, 547
BciT130I CCWGG 1 cut(s) 687
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 119
BglII AGATCT 1 cut(s) 264
BisI GCNGC 5 cut(s) 126, 158, 510, 708, 738
BlsI GCNGC 5 cut(s) 127, 159, 511, 709, 739
Bme1390I CCNGG 1 cut(s) 687
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 687
BmrI ACTGGG 1 cut(s) 762
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 762
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 708
Bpu14I TTCGAA 2 cut(s) 607, 650
BpuEI CTTGAG 2 cut(s) 65, 193
BsaAI YACGTR 1 cut(s) 748
BsaHI GRCGYC 1 cut(s) 682
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 189, 546, 596
Bse1I ACTGG 4 cut(s) 73, 114, 214, 757
BseBI CCWGG 1 cut(s) 687
BseDI CCNNGG 3 cut(s) 189, 546, 596
BseGI GGATG 4 cut(s) 90, 169, 294, 415
BseMII CTCAG 1 cut(s) 646
BseNI ACTGG 4 cut(s) 73, 114, 214, 757
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 5 cut(s) 137, 169, 496, 719, 749
BseYI CCCAGC 2 cut(s) 470, 733
BsgI GTGCAG 2 cut(s) 144, 606
BshFI GGCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 241
BslFI GGGAC 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 388
BsmI GAATGC 2 cut(s) 13, 658
BsnI GGCC 1 cut(s) 188
Bso31I GGTCTC 1 cut(s) 45
Bsp119I TTCGAA 2 cut(s) 607, 650
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 4 cut(s) 15, 264, 542, 657
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 645
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 537
BspT104I TTCGAA 2 cut(s) 607, 650
BspTNI GGTCTC 1 cut(s) 45
BsrI ACTGG 4 cut(s) 73, 114, 214, 757
BssECI CCNNGG 3 cut(s) 189, 546, 596
BssMI GATC 4 cut(s) 15, 264, 542, 657
BssNI GRCGYC 1 cut(s) 682
BssT1I CCWWGG 3 cut(s) 189, 546, 596
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 2 cut(s) 337, 587
Bst6I CTCTTC 2 cut(s) 426, 693
BstACI GRCGYC 1 cut(s) 682
BstBAI YACGTR 1 cut(s) 748
BstBI TTCGAA 2 cut(s) 607, 650
BstDEI CTNAG 1 cut(s) 632
BstF5I GGATG 4 cut(s) 90, 169, 294, 415
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 4 cut(s) 18, 267, 545, 660
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 4 cut(s) 15, 264, 542, 657
BstMWI GCNNNNNNNGC 4 cut(s) 30, 437, 662, 792
BstNI CCWGG 1 cut(s) 687
BstSCI CCNGG 1 cut(s) 685
BstSNI TACGTA 1 cut(s) 748
BstV1I GCAGC 5 cut(s) 137, 169, 496, 719, 749
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 264, 542
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 2 cut(s) 264, 542
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 4 cut(s) 90, 169, 294, 415
BtsIMutI CAGTG 4 cut(s) 66, 207, 592, 640
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 1 cut(s) 415
CseI GACGC 1 cut(s) 775
CviAII CATG 1 cut(s) 813
DdeI CTNAG 1 cut(s) 632
DpnI GATC 4 cut(s) 17, 266, 544, 659
DpnII GATC 4 cut(s) 15, 264, 542, 657
Eam1104I CTCTTC 2 cut(s) 426, 693
EarI CTCTTC 2 cut(s) 426, 693
Eco105I TACGTA 1 cut(s) 748
Eco130I CCWWGG 3 cut(s) 189, 546, 596
Eco31I GGTCTC 1 cut(s) 45
Eco57I CTGAAG 2 cut(s) 372, 417
EcoRII CCWGG 1 cut(s) 685
EcoT14I CCWWGG 3 cut(s) 189, 546, 596
ErhI CCWWGG 3 cut(s) 189, 546, 596
FaeI CATG 1 cut(s) 816
FaiI YATR 7 cut(s) 135, 302, 505, 507, 575, 727, 814
FaqI GGGAC 1 cut(s) 388
FatI CATG 1 cut(s) 812
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 5 cut(s) 126, 158, 510, 708, 738
FokI GGATG 4 cut(s) 97, 176, 281, 402
Fsp4HI GCNGC 5 cut(s) 126, 158, 510, 708, 738
FspBI CTAG 1 cut(s) 119
FspI TGCGCA 1 cut(s) 414
GlaI GCGC 1 cut(s) 414
GluI GCNGC 5 cut(s) 126, 158, 510, 708, 738
GsaI CCCAGC 2 cut(s) 474, 737
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 1 cut(s) 188
HgaI GACGC 1 cut(s) 775
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 682
Hin1II CATG 1 cut(s) 816
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 4 cut(s) 148, 175, 323, 386
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 3 cut(s) 147, 322, 426
Hpy188III TCNNGA 4 cut(s) 44, 234, 383, 435
Hpy8I GTNNAC 1 cut(s) 583
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 337, 587
HpyCH4IV ACGT 2 cut(s) 682, 747
HpyCH4V TGCA 6 cut(s) 11, 125, 345, 488, 623, 707
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 437, 662, 792
HpyF3I CTNAG 1 cut(s) 632
HpySE526I ACGT 2 cut(s) 682, 747
Hsp92I GRCGYC 1 cut(s) 682
Hsp92II CATG 1 cut(s) 816
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 4 cut(s) 15, 264, 542, 657
LmnI GCTCC 2 cut(s) 437, 521
Lsp1109I GCAGC 5 cut(s) 137, 169, 496, 719, 749
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 119
MaeII ACGT 2 cut(s) 682, 747
MaeIII GTNAC 5 cut(s) 64, 205, 367, 443, 748
MalI GATC 4 cut(s) 17, 266, 544, 659
MboI GATC 4 cut(s) 15, 264, 542, 657
MboII GAAGA 4 cut(s) 222, 365, 413, 710
MflI RGATCY 2 cut(s) 264, 542
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 4 cut(s) 275, 407, 528, 644
MlyI GAGTC 2 cut(s) 157, 184
MnlI CCTC 8 cut(s) 20, 40, 97, 241, 429, 626, 694, 740
MseI TTAA 3 cut(s) 254, 279, 291
MspA1I CMGCKG 4 cut(s) 128, 160, 350, 710
MspR9I CCNGG 1 cut(s) 687
Mva1269I GAATGC 2 cut(s) 13, 658
MvaI CCWGG 1 cut(s) 687
MwoI GCNNNNNNNGC 4 cut(s) 30, 437, 662, 792
NdeII GATC 4 cut(s) 15, 264, 542, 657
NlaIII CATG 1 cut(s) 816
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 64, 205
NsbI TGCGCA 1 cut(s) 414
NspV TTCGAA 2 cut(s) 607, 650
PctI GAATGC 2 cut(s) 13, 658
PfeI GAWTC 2 cut(s) 323, 386
PfoI TCCNGGA 1 cut(s) 685
PkrI GCNGC 5 cut(s) 127, 159, 511, 709, 739
PleI GAGTC 2 cut(s) 156, 183
PpsI GAGTC 2 cut(s) 156, 183
Ppu21I YACGTR 1 cut(s) 748
PsiI TTATAA 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 685
PspFI CCCAGC 2 cut(s) 470, 733
PspGI CCWGG 1 cut(s) 685
PspN4I GGNNCC 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 2 cut(s) 264, 542
PvuII CAGCTG 4 cut(s) 128, 160, 350, 710
SaqAI TTAA 3 cut(s) 254, 279, 291
SatI GCNGC 5 cut(s) 126, 158, 510, 708, 738
Sau3AI GATC 4 cut(s) 15, 264, 542, 657
SchI GAGTC 2 cut(s) 157, 184
ScrFI CCNGG 1 cut(s) 687
SduI GDGCHC 1 cut(s) 241
SfaNI GCATC 1 cut(s) 424
SfuI TTCGAA 2 cut(s) 607, 650
SmlI CTYRAG 2 cut(s) 44, 172
SmoI CTYRAG 2 cut(s) 44, 172
SnaBI TACGTA 1 cut(s) 748
Sse9I AATT 4 cut(s) 275, 407, 528, 644
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 685
StyI CCWWGG 3 cut(s) 189, 546, 596
TaaI ACNGT 2 cut(s) 337, 587
TaiI ACGT 2 cut(s) 685, 750
TaqI TCGA 2 cut(s) 607, 650
TasI AATT 4 cut(s) 275, 407, 528, 644
TfiI GAWTC 2 cut(s) 323, 386
Tru1I TTAA 3 cut(s) 254, 279, 291
Tru9I TTAA 3 cut(s) 254, 279, 291
TscAI CASTG 4 cut(s) 73, 214, 592, 640
TseFI GTSAC 2 cut(s) 64, 205
TseI GCWGC 5 cut(s) 125, 157, 509, 707, 737
Tsp45I GTSAC 2 cut(s) 64, 205
TspDTI ATGAA 3 cut(s) 122, 188, 592
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 4 cut(s) 73, 214, 592, 640
XapI RAATTY 1 cut(s) 644
XspI CTAG 1 cut(s) 119
ZraI GACGTC 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.