Rh4AG150800

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000208
Physical Location & Seq
Forward (+)
38170258 .. 38171857
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG150800.1

Sequence Viewer

Length: 477 bp
ATGGCTCAATATGGCGGAGAAAGAAGATGGTCTCTTGAAGGAATGACTGCTCTCGTCACTGGTGGAACCAAAGGGATCGGGTATGCGATTGTTGAGGAATTGGCTGGATTAGGTGCAAGTGTACACACTTGTTCAAGGAATGAAGCCCAGCTCAATGAATGCTTGAATCAATGGAAGAAGAAGGGTTTTCATCAAGTCACTGGTTCAGTGTGTGATGTGGTCTCAAAAATCCAAAGAGAGGAGCTAATACAGAAGGTCTCATCACTGTTTCATGGGAAACTTAATATTCTTATTTTGAATAACGAAAAGTTTATGGAAGCTATCATCTCCCGAACCCCATTAGGACGTATTGGAGAGCCTGAAGAGGTGTCTGCCCTGGTGGCATTTTTATGCCTTCCTGCAGCCTCATACATAACAGGGCAGACTATTTGCATCGATGGAGGGCTAACTGTCAATGGCTTCCAGTTCCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

158

Amino Acids

17.12

Weight (kDa)

6.29

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 16 - 100 7.6e-15 short chain dehydrogenase
adh_short_C2 PF13561 24 - 100 1.5e-07 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 100 - 150 3.1e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 15
AclWI GGATC 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 4 cut(s) 38, 135, 166, 298
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 3 cut(s) 151, 244, 320
AluI AGCT 3 cut(s) 151, 244, 320
Alw26I GTCTC 3 cut(s) 36, 226, 262
AlwI GGATC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 413
BccI CCATC 2 cut(s) 21, 431
BciT130I CCWGG 1 cut(s) 377
BcoDI GTCTC 3 cut(s) 36, 226, 262
BfmI CTRYAG 1 cut(s) 399
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 441
Bsa29I ATCGAT 1 cut(s) 435
BsaI GGTCTC 3 cut(s) 36, 226, 262
BsaJI CCNNGG 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 3 cut(s) 64, 205, 463
BseBI CCWGG 1 cut(s) 377
BseCI ATCGAT 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 238
BseNI ACTGG 3 cut(s) 64, 205, 463
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 413
BseYI CCCAGC 1 cut(s) 147
BshVI ATCGAT 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 3 cut(s) 36, 226, 262
BsmI GAATGC 1 cut(s) 164
Bso31I GGTCTC 3 cut(s) 36, 226, 262
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 1 cut(s) 15
BspDI ATCGAT 1 cut(s) 435
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 3 cut(s) 36, 226, 262
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 3 cut(s) 64, 205, 463
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 267, 451
Bst6I CTCTTC 1 cut(s) 357
BstAUI TGTACA 1 cut(s) 121
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 3 cut(s) 36, 226, 262
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 413
Bsu15I ATCGAT 1 cut(s) 435
BsuTUI ATCGAT 1 cut(s) 435
BtsIMutI CAGTG 4 cut(s) 57, 198, 213, 263
ClaI ATCGAT 1 cut(s) 435
Csp6I GTAC 1 cut(s) 122
CviAII CATG 1 cut(s) 272
CviQI GTAC 1 cut(s) 122
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
EciI GGCGGA 1 cut(s) 30
Eco31I GGTCTC 3 cut(s) 36, 226, 262
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 375
FaeI CATG 1 cut(s) 275
FaiI YATR 8 cut(s) 12, 84, 273, 314, 391, 409, 413, 475
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 402
Fsp4HI GCNGC 1 cut(s) 402
GluI GCNGC 1 cut(s) 402
GsaI CCCAGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 275
HinfI GANTC 1 cut(s) 166
Hpy166II GTNNAC 2 cut(s) 122, 124
Hpy188III TCNNGA 2 cut(s) 35, 330
Hpy8I GTNNAC 2 cut(s) 122, 124
HpyAV CCTTC 4 cut(s) 32, 175, 247, 404
HpyCH4III ACNGT 2 cut(s) 267, 451
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 3 cut(s) 116, 401, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 1 cut(s) 275
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 9 cut(s) 45, 90, 161, 186, 362, 372, 389, 402, 411
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 1 cut(s) 441
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 2 cut(s) 55, 196
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 4 cut(s) 36, 187, 190, 374
MluCI AATT 1 cut(s) 98
MnlI CCTC 5 cut(s) 88, 232, 358, 415, 434
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 388
MspR9I CCNGG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 380
NdeII GATC 1 cut(s) 75
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 55, 196
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 403
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 388
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 377
SetI ASST 7 cut(s) 115, 153, 246, 258, 322, 349, 369
SfaNI GCATC 1 cut(s) 441
SfcI CTRYAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 388
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 15
SspI AATATT 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 2 cut(s) 267, 451
TaiI ACGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 435
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 121
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 4 cut(s) 64, 205, 213, 270
TseFI GTSAC 2 cut(s) 55, 196
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 2 cut(s) 55, 196
TspDTI ATGAA 4 cut(s) 156, 171, 179, 260
TspRI CASTG 4 cut(s) 64, 205, 213, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.